Wall clock time and date at job start Mon Mar 30 2020 06:03:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.39626 * 120.11551 * 2 1 4 4 C 1.46486 * 134.03203 * 0.02562 * 3 2 1 5 5 C 1.34239 * 106.99611 * 179.73074 * 4 3 2 6 6 N 1.36828 * 109.92873 * 0.22960 * 5 4 3 7 7 C 1.46508 * 125.06429 * 179.97438 * 6 5 4 8 8 C 1.37680 * 109.87874 * 359.97438 * 6 5 4 9 9 C 1.39125 * 133.51283 * 180.02562 * 8 6 5 10 10 C 1.37755 * 119.77920 * 179.30507 * 9 8 6 11 11 C 1.36624 * 120.11582 * 179.97438 * 2 1 3 12 12 C 1.50696 * 119.74103 * 0.02562 * 11 2 1 13 13 C 1.52997 * 109.47132 * 84.99893 * 12 11 2 14 14 C 1.50697 * 109.47545 * 180.02562 * 13 12 11 15 15 H 1.08006 * 120.00003 * 0.02562 * 14 13 12 16 16 C 1.37880 * 120.00538 * 180.02562 * 14 13 12 17 17 N 1.31509 * 119.99467 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00230 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47184 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47386 * 119.99628 * 18 16 14 21 21 H 1.48496 * 109.46848 * 239.99699 * 18 16 14 22 22 H 1.09001 * 109.47035 * 90.00503 * 1 2 3 23 23 H 1.09006 * 109.46862 * 209.99777 * 1 2 3 24 24 H 1.09002 * 109.47198 * 329.99718 * 1 2 3 25 25 H 1.08002 * 126.50546 * 0.02562 * 4 3 2 26 26 H 1.07997 * 125.03860 * 180.18573 * 5 4 3 27 27 H 1.08997 * 109.47138 * 90.02422 * 7 6 5 28 28 H 1.08997 * 109.47001 * 210.02617 * 7 6 5 29 29 H 1.09001 * 109.46458 * 330.02476 * 7 6 5 30 30 H 1.07996 * 120.11112 * 359.97438 * 9 8 6 31 31 H 1.08003 * 119.66677 * 180.19458 * 10 9 8 32 32 H 1.08992 * 109.47632 * 205.00217 * 12 11 2 33 33 H 1.09010 * 109.46931 * 325.00221 * 12 11 2 34 34 H 1.09004 * 109.47512 * 300.00479 * 13 12 11 35 35 H 1.09002 * 109.47177 * 60.00130 * 13 12 11 36 36 H 0.97001 * 119.99688 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2076 1.2078 0.0000 4 6 1.8075 2.6169 0.0005 5 6 2.9352 3.3451 0.0062 6 7 4.0248 2.5174 0.0043 7 6 5.4204 2.9631 0.0087 8 6 3.6144 1.2032 -0.0023 9 6 4.2919 -0.0119 -0.0062 10 6 3.5809 -1.1917 0.0016 11 6 2.1926 -1.1818 0.0005 12 6 1.4358 -2.4850 0.0005 13 6 1.0715 -2.8632 -1.4365 14 6 0.3142 -4.1661 -1.4366 15 1 0.1125 -4.6735 -0.5047 16 6 -0.1212 -4.7105 -2.6262 17 7 0.1241 -4.0924 -3.7608 18 14 -1.0605 -6.3251 -2.6261 19 1 -1.2049 -6.8137 -1.2312 20 1 -2.4056 -6.1153 -3.2192 21 1 -0.3172 -7.3301 -3.4277 22 1 -0.3633 -0.0001 -1.0277 23 1 -0.3633 -0.8901 0.5138 24 1 -0.3634 0.8900 0.5139 25 1 0.7969 2.9979 0.0013 26 1 2.9765 4.4242 0.0109 27 1 5.7649 3.0686 1.0374 28 1 6.0380 2.2285 -0.5078 29 1 5.4964 3.9240 -0.5003 30 1 5.3717 -0.0301 -0.0044 31 1 4.1087 -2.1340 0.0018 32 1 2.0585 -3.2668 0.4352 33 1 0.5251 -2.3763 0.5896 34 1 0.4488 -2.0814 -1.8713 35 1 1.9822 -2.9719 -2.0256 36 1 -0.1826 -4.4752 -4.5976 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259669734.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:54 Heat of formation + Delta-G solvation = 42.502676 kcal Electronic energy + Delta-G solvation = -16753.562953 eV Core-core repulsion = 14202.463528 eV Total energy + Delta-G solvation = -2551.099425 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.02254 -37.57872 -33.60012 -33.00303 -31.92748 -30.41026 -28.26179 -26.30789 -26.11719 -24.43024 -21.76264 -21.44523 -19.69652 -19.25650 -16.78493 -16.29045 -15.83370 -15.22018 -14.71333 -14.42101 -13.88234 -13.41871 -13.27911 -12.85950 -12.48205 -12.41154 -12.23498 -12.15344 -12.11870 -11.66980 -11.38381 -10.97853 -10.88024 -10.49083 -10.41946 -10.28951 -9.62661 -9.46095 -9.03690 -8.96040 -8.27669 -7.64842 -7.12292 -5.92785 -3.95275 1.52273 2.11148 2.96970 2.98808 3.35132 3.42539 3.46753 4.33332 4.52249 4.71504 4.91298 5.06511 5.08222 5.27406 5.40930 5.42646 5.57765 5.65262 5.82551 5.91640 5.99948 6.19449 6.26540 6.31425 6.39900 6.55283 6.69764 6.83782 6.93930 7.06450 7.10480 7.24016 7.39348 7.52473 7.66880 7.78851 7.95391 8.09657 8.49863 9.12649 9.68320 11.18216 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.042526 B = 0.004876 C = 0.004688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.266426 B = 5740.912012 C = 5970.693567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.038 4.038 3 C -0.106 4.106 4 C -0.199 4.199 5 C 0.035 3.965 6 N -0.494 5.494 7 C 0.083 3.917 8 C 0.086 3.914 9 C -0.143 4.143 10 C -0.086 4.086 11 C -0.089 4.089 12 C -0.076 4.076 13 C 0.030 3.970 14 C -0.519 4.519 15 H 0.055 0.945 16 C 0.057 3.943 17 N -0.895 5.895 18 Si 0.889 3.111 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.285 1.285 22 H 0.073 0.927 23 H 0.074 0.926 24 H 0.054 0.946 25 H 0.142 0.858 26 H 0.161 0.839 27 H 0.063 0.937 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.111 0.889 31 H 0.123 0.877 32 H 0.054 0.946 33 H 0.061 0.939 34 H 0.019 0.981 35 H 0.015 0.985 36 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.975 14.493 8.220 18.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.039 4.039 3 C -0.110 4.110 4 C -0.225 4.225 5 C -0.089 4.089 6 N -0.179 5.179 7 C -0.059 4.059 8 C -0.019 4.019 9 C -0.164 4.164 10 C -0.105 4.105 11 C -0.090 4.090 12 C -0.113 4.113 13 C -0.007 4.007 14 C -0.557 4.557 15 H 0.074 0.926 16 C -0.144 4.144 17 N -0.534 5.534 18 Si 0.717 3.283 19 H -0.197 1.197 20 H -0.211 1.211 21 H -0.211 1.211 22 H 0.091 0.909 23 H 0.092 0.908 24 H 0.073 0.927 25 H 0.160 0.840 26 H 0.179 0.821 27 H 0.081 0.919 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.129 0.871 31 H 0.141 0.859 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.037 0.963 35 H 0.033 0.967 36 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 8.277 14.616 8.036 18.620 hybrid contribution -0.301 -0.758 -0.258 0.855 sum 7.975 13.858 7.778 17.781 Atomic orbital electron populations 1.20788 0.91375 1.02000 1.02681 1.18909 0.95699 0.90433 0.98815 1.19007 0.91740 0.93116 1.07142 1.21620 0.97625 0.91188 1.12034 1.21631 0.85568 0.95740 1.05974 1.43694 1.05658 1.04148 1.64443 1.21824 0.80522 1.01159 1.02382 1.18175 0.93679 0.84432 1.05568 1.19858 0.98422 0.89619 1.08461 1.20773 0.93761 0.96742 0.99229 1.19688 0.93413 0.95717 1.00177 1.20792 0.97883 0.91094 1.01519 1.19057 0.96523 0.96019 0.89106 1.21330 1.35098 1.06605 0.92680 0.92628 1.25016 0.96302 0.97399 0.95699 1.69990 1.46809 1.39020 0.97604 0.86578 0.79690 0.83955 0.78033 1.19733 1.21073 1.21109 0.90857 0.90752 0.92672 0.84048 0.82129 0.91851 0.90406 0.90416 0.87135 0.85911 0.92702 0.92053 0.96270 0.96671 0.93154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.94 9.23 36.01 0.33 -1.61 16 2 C -0.04 -0.72 5.87 -104.68 -0.61 -1.33 16 3 C -0.11 -1.87 6.14 -105.14 -0.65 -2.52 16 4 C -0.20 -2.90 10.78 -37.67 -0.41 -3.30 16 5 C 0.04 0.43 11.29 -16.73 -0.19 0.24 16 6 N -0.49 -6.56 3.18 -121.80 -0.39 -6.94 16 7 C 0.08 0.72 11.03 59.85 0.66 1.38 16 8 C 0.09 1.42 6.81 -83.99 -0.57 0.85 16 9 C -0.14 -2.31 9.97 -39.43 -0.39 -2.71 16 10 C -0.09 -1.54 9.64 -39.54 -0.38 -1.92 16 11 C -0.09 -1.76 5.10 -104.99 -0.54 -2.30 16 12 C -0.08 -1.64 4.75 -27.89 -0.13 -1.77 16 13 C 0.03 0.80 4.95 -27.89 -0.14 0.66 16 14 C -0.52 -14.87 9.11 -34.44 -0.31 -15.18 16 15 H 0.06 1.54 7.74 -52.48 -0.41 1.14 16 16 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 17 N -0.89 -27.40 13.29 55.43 0.74 -26.66 16 18 Si 0.89 21.89 29.54 -169.99 -5.02 16.86 16 19 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 21 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 22 H 0.07 1.34 8.10 -51.93 -0.42 0.92 16 23 H 0.07 1.30 5.98 -51.93 -0.31 0.99 16 24 H 0.05 0.81 7.90 -51.93 -0.41 0.40 16 25 H 0.14 1.76 8.06 -52.49 -0.42 1.34 16 26 H 0.16 1.33 8.06 -52.49 -0.42 0.91 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.08 0.64 8.10 -51.93 -0.42 0.22 16 29 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 31 H 0.12 2.02 8.06 -52.48 -0.42 1.60 16 32 H 0.05 1.14 8.05 -51.93 -0.42 0.72 16 33 H 0.06 1.28 6.11 -51.92 -0.32 0.96 16 34 H 0.02 0.54 7.81 -51.93 -0.41 0.13 16 35 H 0.01 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 302.18 15.07 4.55 4.55 Total: -1.00 -32.99 302.18 -8.75 -41.73 By element: Atomic # 1 Polarization: 3.62 SS G_CDS: -5.20 Total: -1.59 kcal Atomic # 6 Polarization: -24.53 SS G_CDS: -3.43 Total: -27.96 kcal Atomic # 7 Polarization: -33.95 SS G_CDS: 0.35 Total: -33.60 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -32.99 -8.75 -41.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259669734.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.237 kcal (2) G-P(sol) polarization free energy of solvation -32.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds