Wall clock time and date at job start Mon Mar 30 2020 06:03:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.39626 * 120.11551 * 2 1 4 4 C 1.46486 * 134.03203 * 0.02562 * 3 2 1 5 5 C 1.34239 * 106.99611 * 179.73074 * 4 3 2 6 6 N 1.36828 * 109.92873 * 0.22960 * 5 4 3 7 7 C 1.46508 * 125.06429 * 179.97438 * 6 5 4 8 8 C 1.37680 * 109.87874 * 359.97438 * 6 5 4 9 9 C 1.39125 * 133.51283 * 180.02562 * 8 6 5 10 10 C 1.37755 * 119.77920 * 179.30507 * 9 8 6 11 11 C 1.36624 * 120.11582 * 179.97438 * 2 1 3 12 12 C 1.50696 * 119.74103 * 0.02562 * 11 2 1 13 13 C 1.52997 * 109.47132 * 84.99893 * 12 11 2 14 14 C 1.50697 * 109.47545 * 180.02562 * 13 12 11 15 15 H 1.08006 * 120.00003 * 0.02562 * 14 13 12 16 16 C 1.37880 * 120.00538 * 180.02562 * 14 13 12 17 17 N 1.31509 * 119.99467 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00230 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47184 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47386 * 119.99628 * 18 16 14 21 21 H 1.48496 * 109.46848 * 239.99699 * 18 16 14 22 22 H 1.09001 * 109.47035 * 90.00503 * 1 2 3 23 23 H 1.09006 * 109.46862 * 209.99777 * 1 2 3 24 24 H 1.09002 * 109.47198 * 329.99718 * 1 2 3 25 25 H 1.08002 * 126.50546 * 0.02562 * 4 3 2 26 26 H 1.07997 * 125.03860 * 180.18573 * 5 4 3 27 27 H 1.08997 * 109.47138 * 90.02422 * 7 6 5 28 28 H 1.08997 * 109.47001 * 210.02617 * 7 6 5 29 29 H 1.09001 * 109.46458 * 330.02476 * 7 6 5 30 30 H 1.07996 * 120.11112 * 359.97438 * 9 8 6 31 31 H 1.08003 * 119.66677 * 180.19458 * 10 9 8 32 32 H 1.08992 * 109.47632 * 205.00217 * 12 11 2 33 33 H 1.09010 * 109.46931 * 325.00221 * 12 11 2 34 34 H 1.09004 * 109.47512 * 300.00479 * 13 12 11 35 35 H 1.09002 * 109.47177 * 60.00130 * 13 12 11 36 36 H 0.97001 * 119.99688 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2076 1.2078 0.0000 4 6 1.8075 2.6169 0.0005 5 6 2.9352 3.3451 0.0062 6 7 4.0248 2.5174 0.0043 7 6 5.4204 2.9631 0.0087 8 6 3.6144 1.2032 -0.0023 9 6 4.2919 -0.0119 -0.0062 10 6 3.5809 -1.1917 0.0016 11 6 2.1926 -1.1818 0.0005 12 6 1.4358 -2.4850 0.0005 13 6 1.0715 -2.8632 -1.4365 14 6 0.3142 -4.1661 -1.4366 15 1 0.1125 -4.6735 -0.5047 16 6 -0.1212 -4.7105 -2.6262 17 7 0.1241 -4.0924 -3.7608 18 14 -1.0605 -6.3251 -2.6261 19 1 -1.2049 -6.8137 -1.2312 20 1 -2.4056 -6.1153 -3.2192 21 1 -0.3172 -7.3301 -3.4277 22 1 -0.3633 -0.0001 -1.0277 23 1 -0.3633 -0.8901 0.5138 24 1 -0.3634 0.8900 0.5139 25 1 0.7969 2.9979 0.0013 26 1 2.9765 4.4242 0.0109 27 1 5.7649 3.0686 1.0374 28 1 6.0380 2.2285 -0.5078 29 1 5.4964 3.9240 -0.5003 30 1 5.3717 -0.0301 -0.0044 31 1 4.1087 -2.1340 0.0018 32 1 2.0585 -3.2668 0.4352 33 1 0.5251 -2.3763 0.5896 34 1 0.4488 -2.0814 -1.8713 35 1 1.9822 -2.9719 -2.0256 36 1 -0.1826 -4.4752 -4.5976 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259669734.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:54 Heat of formation + Delta-G solvation = 24.962783 kcal Electronic energy + Delta-G solvation = -16754.323540 eV Core-core repulsion = 14202.463528 eV Total energy + Delta-G solvation = -2551.860012 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.16679 -38.92176 -35.57014 -34.18808 -33.57939 -31.83135 -29.79379 -27.70712 -27.24321 -26.11911 -23.37568 -22.87356 -21.17643 -20.39039 -18.50886 -17.88421 -17.02261 -16.51509 -16.21492 -16.08954 -15.22147 -14.69131 -14.47210 -14.26809 -14.19884 -13.86252 -13.51303 -13.40476 -13.26132 -13.11378 -13.01255 -12.81716 -12.58641 -12.14021 -11.92040 -11.84718 -11.44233 -11.35408 -11.04839 -10.53052 -10.26666 -8.92839 -8.35624 -8.15734 -6.28653 0.27229 0.75161 1.41155 1.41641 1.55383 1.88627 2.02936 2.43042 2.98394 3.15852 3.80902 3.97714 4.04944 4.13751 4.25801 4.41712 4.50232 4.52836 4.57721 4.74040 4.74474 4.82014 4.91513 4.98195 5.01467 5.07095 5.12651 5.27469 5.37490 5.54322 5.59156 5.66955 5.86427 5.90361 5.95288 6.06807 6.27086 6.39277 6.54864 6.88873 7.40521 8.95208 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.042526 B = 0.004876 C = 0.004688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.266426 B = 5740.912012 C = 5970.693567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.059 4.059 3 C -0.130 4.130 4 C -0.231 4.231 5 C 0.061 3.939 6 N -0.492 5.492 7 C 0.074 3.926 8 C 0.069 3.931 9 C -0.134 4.134 10 C -0.108 4.108 11 C -0.117 4.117 12 C -0.060 4.060 13 C 0.041 3.959 14 C -0.540 4.540 15 H 0.062 0.938 16 C -0.001 4.001 17 N -0.935 5.935 18 Si 0.966 3.034 19 H -0.260 1.260 20 H -0.278 1.278 21 H -0.278 1.278 22 H 0.054 0.946 23 H 0.065 0.935 24 H 0.079 0.921 25 H 0.155 0.845 26 H 0.210 0.790 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.107 0.893 30 H 0.141 0.859 31 H 0.129 0.871 32 H 0.058 0.942 33 H 0.064 0.936 34 H -0.009 1.009 35 H -0.017 1.017 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.913 16.045 9.114 20.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.060 4.060 3 C -0.135 4.135 4 C -0.256 4.256 5 C -0.065 4.065 6 N -0.176 5.176 7 C -0.067 4.067 8 C -0.037 4.037 9 C -0.154 4.154 10 C -0.127 4.127 11 C -0.118 4.118 12 C -0.097 4.097 13 C 0.004 3.996 14 C -0.578 4.578 15 H 0.080 0.920 16 C -0.198 4.198 17 N -0.576 5.576 18 Si 0.790 3.210 19 H -0.184 1.184 20 H -0.204 1.204 21 H -0.204 1.204 22 H 0.072 0.928 23 H 0.084 0.916 24 H 0.098 0.902 25 H 0.173 0.827 26 H 0.227 0.773 27 H 0.098 0.902 28 H 0.099 0.901 29 H 0.126 0.874 30 H 0.159 0.841 31 H 0.147 0.853 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.009 0.991 35 H 0.001 0.999 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 9.239 16.183 8.949 20.671 hybrid contribution -0.497 -1.059 -0.544 1.290 sum 8.742 15.124 8.405 19.386 Atomic orbital electron populations 1.20716 0.91126 1.02764 1.01613 1.19101 0.96236 0.91076 0.99547 1.19407 0.92793 0.94099 1.07207 1.21901 0.99482 0.89874 1.14335 1.22379 0.84385 0.97614 1.02079 1.44088 1.07814 1.02898 1.62792 1.22194 0.77835 1.02596 1.04041 1.18395 0.93562 0.86116 1.05654 1.20111 0.99832 0.88959 1.06514 1.20892 0.93211 0.98029 1.00613 1.19608 0.94389 0.94972 1.02864 1.20505 0.98445 0.92677 0.98096 1.18858 0.94241 0.94782 0.91710 1.21752 1.35430 1.07461 0.93197 0.91975 1.25996 0.97198 1.01481 0.95131 1.70134 1.47959 1.41059 0.98411 0.85384 0.78090 0.78822 0.78659 1.18401 1.20352 1.20406 0.92766 0.91630 0.90178 0.82694 0.77316 0.90154 0.90121 0.87409 0.84115 0.85343 0.92370 0.91760 0.99063 0.99893 0.92864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.85 9.23 71.24 0.66 -3.20 16 2 C -0.06 -2.32 5.87 -19.91 -0.12 -2.44 16 3 C -0.13 -4.58 6.14 -20.20 -0.12 -4.71 16 4 C -0.23 -6.31 10.78 23.51 0.25 -6.06 16 5 C 0.06 1.27 11.29 83.00 0.94 2.20 16 6 N -0.49 -11.42 3.18 -539.27 -1.71 -13.13 16 7 C 0.07 0.96 11.03 127.77 1.41 2.37 16 8 C 0.07 2.18 6.81 39.03 0.27 2.44 16 9 C -0.13 -4.23 9.97 22.37 0.22 -4.00 16 10 C -0.11 -3.99 9.64 22.30 0.21 -3.77 16 11 C -0.12 -4.87 5.10 -20.10 -0.10 -4.97 16 12 C -0.06 -2.73 4.75 29.85 0.14 -2.59 16 13 C 0.04 2.32 4.95 29.85 0.15 2.47 16 14 C -0.54 -31.92 9.11 25.60 0.23 -31.69 16 15 H 0.06 3.50 7.74 -2.91 -0.02 3.48 16 16 C 0.00 -0.04 5.46 84.66 0.46 0.42 16 17 N -0.94 -58.98 13.29 21.45 0.28 -58.70 16 18 Si 0.97 45.40 29.54 68.60 2.03 47.43 16 19 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 20 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 21 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 22 H 0.05 2.13 8.10 -2.39 -0.02 2.11 16 23 H 0.06 2.43 5.98 -2.38 -0.01 2.42 16 24 H 0.08 2.41 7.90 -2.39 -0.02 2.39 16 25 H 0.16 3.62 8.06 -2.91 -0.02 3.60 16 26 H 0.21 2.24 8.06 -2.91 -0.02 2.21 16 27 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.08 1.04 8.10 -2.39 -0.02 1.02 16 29 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.14 3.44 8.06 -2.91 -0.02 3.41 16 31 H 0.13 4.38 8.06 -2.91 -0.02 4.35 16 32 H 0.06 2.53 8.05 -2.39 -0.02 2.51 16 33 H 0.06 2.82 6.11 -2.38 -0.01 2.80 16 34 H -0.01 -0.55 7.81 -2.38 -0.02 -0.57 16 35 H -0.02 -1.07 8.14 -2.39 -0.02 -1.09 16 36 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 Total: -1.00 -74.15 302.18 6.25 -67.89 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: 1.05 Total: 10.04 kcal Atomic # 6 Polarization: -58.13 SS G_CDS: 4.60 Total: -53.53 kcal Atomic # 7 Polarization: -70.40 SS G_CDS: -1.43 Total: -71.83 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Total: -74.15 6.25 -67.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259669734.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.857 kcal (2) G-P(sol) polarization free energy of solvation -74.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds