Wall clock time and date at job start Mon Mar 30 2020 05:35:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 120.00328 * 2 1 4 4 H 1.48492 * 109.47009 * 264.93362 * 3 2 1 5 5 H 1.48496 * 109.46850 * 24.93646 * 3 2 1 6 6 H 1.48498 * 109.46901 * 144.93348 * 3 2 1 7 7 C 1.37875 * 119.99480 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99996 * 7.79308 * 7 2 1 9 9 C 1.50697 * 119.99943 * 187.78829 * 7 2 1 10 10 H 1.09000 * 109.01391 * 34.13459 * 9 7 2 11 11 C 1.53421 * 109.08157 * 275.11932 * 9 7 2 12 12 C 1.52587 * 106.97212 * 199.25094 * 11 9 7 13 13 H 1.08999 * 111.22021 * 307.80279 * 12 11 9 14 14 C 1.53751 * 113.43272 * 180.52363 * 12 11 9 15 15 C 1.55401 * 102.11862 * 206.33883 * 14 12 11 16 16 C 1.54925 * 104.95929 * 22.27303 * 15 14 12 17 17 N 1.45924 * 105.78866 * 3.54539 * 16 15 14 18 18 C 1.37462 * 119.55513 * 203.89256 * 17 16 15 19 19 C 1.39187 * 120.02676 * 334.38612 * 18 17 16 20 20 C 1.37898 * 120.41474 * 182.32125 * 19 18 17 21 21 C 1.38303 * 119.79462 * 359.94453 * 20 19 18 22 22 C 1.37977 * 120.07466 * 359.58171 * 21 20 19 23 23 C 1.38625 * 120.71691 * 0.09784 * 22 21 20 24 24 H 0.97005 * 119.99168 * 0.02562 * 1 2 3 25 25 H 1.08991 * 109.96806 * 318.64365 * 11 9 7 26 26 H 1.08998 * 109.96590 * 79.86647 * 11 9 7 27 27 H 1.08998 * 110.86982 * 88.14090 * 14 12 11 28 28 H 1.09000 * 110.94347 * 324.57142 * 14 12 11 29 29 H 1.08997 * 110.34016 * 263.40102 * 15 14 12 30 30 H 1.09003 * 110.34195 * 141.14272 * 15 14 12 31 31 H 1.09000 * 110.18529 * 244.46030 * 16 15 14 32 32 H 1.09008 * 110.18365 * 122.62426 * 16 15 14 33 33 H 1.07997 * 119.79422 * 2.30499 * 19 18 17 34 34 H 1.08000 * 120.09825 * 179.97438 * 20 19 18 35 35 H 1.08009 * 119.96539 * 179.55841 * 21 20 19 36 36 H 1.08002 * 119.64122 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.6039 1.9845 -1.3945 5 1 1.3974 2.6811 0.5903 6 1 3.4892 1.4733 0.8044 7 6 2.0045 -1.1941 0.0005 8 1 1.4719 -2.1251 -0.1259 9 6 3.5010 -1.2002 0.1774 10 1 3.7825 -0.3895 0.8494 11 6 4.1681 -0.9759 -1.1859 12 6 5.6092 -1.4616 -1.0619 13 1 6.1057 -1.0087 -0.2037 14 6 6.4250 -1.2918 -2.3540 15 6 7.4967 -2.4082 -2.2123 16 6 6.8815 -3.4300 -1.2235 17 7 5.5389 -2.9394 -0.9299 18 6 4.9231 -3.3094 0.2420 19 6 5.2802 -4.4984 0.8713 20 6 4.6346 -4.9009 2.0214 21 6 3.6265 -4.1177 2.5535 22 6 3.2743 -2.9331 1.9400 23 6 3.9199 -2.5135 0.7872 24 1 -0.4849 0.8402 -0.0004 25 1 3.6473 -1.5479 -1.9537 26 1 4.1531 0.0845 -1.4376 27 1 6.8915 -0.3074 -2.3922 28 1 5.8024 -1.4596 -3.2328 29 1 8.4208 -1.9970 -1.8061 30 1 7.6827 -2.8796 -3.1774 31 1 7.4744 -3.4731 -0.3099 32 1 6.8291 -4.4159 -1.6856 33 1 6.0678 -5.1097 0.4562 34 1 4.9156 -5.8247 2.5053 35 1 3.1141 -4.4339 3.4502 36 1 2.4864 -2.3268 2.3618 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259694847.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:07 Heat of formation + Delta-G solvation = 28.905172 kcal Electronic energy + Delta-G solvation = -17812.210565 eV Core-core repulsion = 15260.521508 eV Total energy + Delta-G solvation = -2551.689057 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.39124 -37.33135 -34.64309 -32.38349 -31.86846 -29.74852 -28.31797 -27.52849 -24.46723 -22.67602 -22.22797 -20.67659 -19.92093 -18.81442 -16.92975 -16.74887 -15.77758 -14.82482 -14.63436 -14.35621 -13.76361 -13.57114 -13.25498 -12.89652 -12.57191 -12.36049 -11.87987 -11.81966 -11.60499 -11.39089 -11.22776 -11.02810 -10.61006 -10.50763 -10.44196 -10.08629 -9.90106 -9.46101 -9.26596 -9.21841 -8.49409 -7.91019 -6.94548 -6.08515 -4.06096 2.12074 2.15360 3.26257 3.33859 3.35129 4.11612 4.39299 4.54494 4.72710 4.88320 5.08114 5.19155 5.44562 5.46904 5.57271 5.61991 5.72937 5.78664 5.82527 5.93101 6.02054 6.07437 6.11009 6.23050 6.25532 6.36222 6.57871 6.73313 6.78743 6.89827 6.94808 7.14749 7.25360 7.46409 7.53231 7.65244 7.83394 8.05957 8.53622 8.99188 9.53044 11.04424 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.019951 B = 0.010751 C = 0.007461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.092087 B = 2603.731481 C = 3751.992588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.073 3.927 3 Si 0.869 3.131 4 H -0.274 1.274 5 H -0.290 1.290 6 H -0.263 1.263 7 C -0.500 4.500 8 H 0.076 0.924 9 C 0.041 3.959 10 H 0.046 0.954 11 C -0.105 4.105 12 C 0.072 3.928 13 H 0.058 0.942 14 C -0.118 4.118 15 C -0.127 4.127 16 C 0.060 3.940 17 N -0.498 5.498 18 C 0.127 3.873 19 C -0.180 4.180 20 C -0.113 4.113 21 C -0.163 4.163 22 C -0.074 4.074 23 C -0.074 4.074 24 H 0.264 0.736 25 H 0.077 0.923 26 H 0.054 0.946 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.044 0.956 32 H 0.076 0.924 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.110 0.890 36 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.908 -4.229 -0.671 14.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.129 4.129 3 Si 0.697 3.303 4 H -0.200 1.200 5 H -0.217 1.217 6 H -0.188 1.188 7 C -0.537 4.537 8 H 0.094 0.906 9 C 0.023 3.977 10 H 0.064 0.936 11 C -0.143 4.143 12 C -0.034 4.034 13 H 0.076 0.924 14 C -0.156 4.156 15 C -0.165 4.165 16 C -0.066 4.066 17 N -0.211 5.211 18 C 0.027 3.973 19 C -0.202 4.202 20 C -0.131 4.131 21 C -0.183 4.183 22 C -0.093 4.093 23 C -0.077 4.077 24 H 0.074 0.926 25 H 0.095 0.905 26 H 0.073 0.927 27 H 0.089 0.911 28 H 0.097 0.903 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.062 0.938 32 H 0.094 0.906 33 H 0.126 0.874 34 H 0.127 0.873 35 H 0.128 0.872 36 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 13.496 -4.298 -1.073 14.204 hybrid contribution 0.691 0.940 0.441 1.247 sum 14.187 -3.359 -0.633 14.593 Atomic orbital electron populations 1.69915 1.06204 1.26893 1.50509 1.25007 0.94629 0.98707 0.94565 0.87027 0.80335 0.84060 0.78836 1.19996 1.21656 1.18822 1.20891 0.88481 0.94774 1.49598 0.90632 1.18377 0.97023 0.90452 0.91876 0.93597 1.22004 0.91294 0.99609 1.01392 1.22777 0.98529 0.85442 0.96640 0.92378 1.22396 0.96879 0.97946 0.98374 1.22674 0.98156 0.96334 0.99351 1.22406 0.87107 0.98902 0.98202 1.57684 1.21285 1.10337 1.31831 1.18238 0.96104 0.95051 0.87904 1.20645 1.03487 0.97847 0.98207 1.20670 0.97172 0.99118 0.96167 1.20897 0.99683 0.96466 1.01219 1.21106 0.97931 0.95569 0.94687 1.20126 0.94565 0.97653 0.95382 0.92638 0.90476 0.92695 0.91061 0.90274 0.91502 0.91010 0.93790 0.90591 0.87405 0.87277 0.87172 0.85426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.99 13.96 55.43 0.77 -26.22 16 2 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 3 Si 0.87 20.92 25.82 -169.99 -4.39 16.54 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.26 -6.04 6.12 56.52 0.35 -5.69 16 7 C -0.50 -13.77 7.82 -34.44 -0.27 -14.04 16 8 H 0.08 2.33 8.05 -52.49 -0.42 1.90 16 9 C 0.04 0.97 1.82 -92.69 -0.17 0.81 16 10 H 0.05 1.11 5.75 -51.93 -0.30 0.81 16 11 C -0.10 -2.20 4.76 -26.72 -0.13 -2.33 16 12 C 0.07 1.25 2.65 -66.63 -0.18 1.08 16 13 H 0.06 1.03 8.13 -51.93 -0.42 0.61 16 14 C -0.12 -1.63 6.62 -25.07 -0.17 -1.79 16 15 C -0.13 -1.49 6.99 -24.44 -0.17 -1.66 16 16 C 0.06 0.83 5.66 -3.34 -0.02 0.81 16 17 N -0.50 -8.91 4.34 -162.21 -0.70 -9.61 16 18 C 0.13 2.50 5.94 -84.64 -0.50 2.00 16 19 C -0.18 -3.17 9.18 -39.35 -0.36 -3.53 16 20 C -0.11 -1.89 10.05 -39.68 -0.40 -2.29 16 21 C -0.16 -2.95 10.03 -39.65 -0.40 -3.35 16 22 C -0.07 -1.56 9.08 -39.53 -0.36 -1.92 16 23 C -0.07 -1.63 5.31 -104.11 -0.55 -2.19 16 24 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 25 H 0.08 1.73 8.01 -51.93 -0.42 1.31 16 26 H 0.05 1.13 6.38 -51.93 -0.33 0.80 16 27 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.08 1.11 8.09 -51.93 -0.42 0.69 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.04 0.59 7.81 -51.93 -0.41 0.18 16 32 H 0.08 0.98 8.14 -51.92 -0.42 0.55 16 33 H 0.11 1.64 7.13 -52.49 -0.37 1.27 16 34 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 35 H 0.11 1.71 8.06 -52.48 -0.42 1.29 16 36 H 0.13 2.80 7.65 -52.49 -0.40 2.40 16 LS Contribution 279.81 15.07 4.22 4.22 Total: -1.00 -29.76 279.81 -9.09 -38.84 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -5.22 Total: 2.68 kcal Atomic # 6 Polarization: -22.68 SS G_CDS: -3.77 Total: -26.44 kcal Atomic # 7 Polarization: -35.90 SS G_CDS: 0.07 Total: -35.83 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.39 Total: 16.54 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -29.76 -9.09 -38.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259694847.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.750 kcal (2) G-P(sol) polarization free energy of solvation -29.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds