Wall clock time and date at job start Mon Mar 30 2020 05:35:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 120.00328 * 2 1 4 4 H 1.48492 * 109.47009 * 264.93362 * 3 2 1 5 5 H 1.48496 * 109.46850 * 24.93646 * 3 2 1 6 6 H 1.48498 * 109.46901 * 144.93348 * 3 2 1 7 7 C 1.37875 * 119.99480 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99996 * 7.79308 * 7 2 1 9 9 C 1.50697 * 119.99943 * 187.78829 * 7 2 1 10 10 H 1.09000 * 109.01391 * 34.13459 * 9 7 2 11 11 C 1.53421 * 109.08157 * 275.11932 * 9 7 2 12 12 C 1.52587 * 106.97212 * 199.25094 * 11 9 7 13 13 H 1.08999 * 111.22021 * 307.80279 * 12 11 9 14 14 C 1.53751 * 113.43272 * 180.52363 * 12 11 9 15 15 C 1.55401 * 102.11862 * 206.33883 * 14 12 11 16 16 C 1.54925 * 104.95929 * 22.27303 * 15 14 12 17 17 N 1.45924 * 105.78866 * 3.54539 * 16 15 14 18 18 C 1.37462 * 119.55513 * 203.89256 * 17 16 15 19 19 C 1.39187 * 120.02676 * 334.38612 * 18 17 16 20 20 C 1.37898 * 120.41474 * 182.32125 * 19 18 17 21 21 C 1.38303 * 119.79462 * 359.94453 * 20 19 18 22 22 C 1.37977 * 120.07466 * 359.58171 * 21 20 19 23 23 C 1.38625 * 120.71691 * 0.09784 * 22 21 20 24 24 H 0.97005 * 119.99168 * 0.02562 * 1 2 3 25 25 H 1.08991 * 109.96806 * 318.64365 * 11 9 7 26 26 H 1.08998 * 109.96590 * 79.86647 * 11 9 7 27 27 H 1.08998 * 110.86982 * 88.14090 * 14 12 11 28 28 H 1.09000 * 110.94347 * 324.57142 * 14 12 11 29 29 H 1.08997 * 110.34016 * 263.40102 * 15 14 12 30 30 H 1.09003 * 110.34195 * 141.14272 * 15 14 12 31 31 H 1.09000 * 110.18529 * 244.46030 * 16 15 14 32 32 H 1.09008 * 110.18365 * 122.62426 * 16 15 14 33 33 H 1.07997 * 119.79422 * 2.30499 * 19 18 17 34 34 H 1.08000 * 120.09825 * 179.97438 * 20 19 18 35 35 H 1.08009 * 119.96539 * 179.55841 * 21 20 19 36 36 H 1.08002 * 119.64122 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.6039 1.9845 -1.3945 5 1 1.3974 2.6811 0.5903 6 1 3.4892 1.4733 0.8044 7 6 2.0045 -1.1941 0.0005 8 1 1.4719 -2.1251 -0.1259 9 6 3.5010 -1.2002 0.1774 10 1 3.7825 -0.3895 0.8494 11 6 4.1681 -0.9759 -1.1859 12 6 5.6092 -1.4616 -1.0619 13 1 6.1057 -1.0087 -0.2037 14 6 6.4250 -1.2918 -2.3540 15 6 7.4967 -2.4082 -2.2123 16 6 6.8815 -3.4300 -1.2235 17 7 5.5389 -2.9394 -0.9299 18 6 4.9231 -3.3094 0.2420 19 6 5.2802 -4.4984 0.8713 20 6 4.6346 -4.9009 2.0214 21 6 3.6265 -4.1177 2.5535 22 6 3.2743 -2.9331 1.9400 23 6 3.9199 -2.5135 0.7872 24 1 -0.4849 0.8402 -0.0004 25 1 3.6473 -1.5479 -1.9537 26 1 4.1531 0.0845 -1.4376 27 1 6.8915 -0.3074 -2.3922 28 1 5.8024 -1.4596 -3.2328 29 1 8.4208 -1.9970 -1.8061 30 1 7.6827 -2.8796 -3.1774 31 1 7.4744 -3.4731 -0.3099 32 1 6.8291 -4.4159 -1.6856 33 1 6.0678 -5.1097 0.4562 34 1 4.9156 -5.8247 2.5053 35 1 3.1141 -4.4339 3.4502 36 1 2.4864 -2.3268 2.3618 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259694847.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:07 Heat of formation + Delta-G solvation = 11.080008 kcal Electronic energy + Delta-G solvation = -17812.983522 eV Core-core repulsion = 15260.521508 eV Total energy + Delta-G solvation = -2552.462014 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.78604 -38.67547 -36.38983 -33.98248 -33.56379 -31.17183 -29.84594 -28.94806 -26.21647 -24.12679 -23.65019 -22.21547 -21.14370 -20.32368 -19.02852 -18.13383 -17.18001 -16.34611 -16.05701 -15.98938 -15.21082 -14.97510 -14.74706 -14.64597 -14.22998 -13.75141 -13.30025 -13.16245 -13.06615 -12.91117 -12.80506 -12.44427 -12.14278 -12.00705 -11.83625 -11.70269 -11.44658 -11.31332 -11.03587 -10.66066 -10.60904 -9.46022 -8.37177 -8.29103 -6.30863 0.65335 0.65978 1.31966 1.33989 1.43507 2.33132 2.80197 3.03146 3.09560 3.62508 3.73823 4.06705 4.13580 4.18605 4.23639 4.32423 4.42686 4.48260 4.63258 4.66009 4.67708 4.80759 4.83780 4.97730 5.02405 5.05685 5.19108 5.22923 5.25919 5.36915 5.43602 5.49397 5.65849 5.72778 5.95041 6.05997 6.26525 6.34828 6.67087 6.73636 7.31146 8.87880 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.019951 B = 0.010751 C = 0.007461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.092087 B = 2603.731481 C = 3751.992588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.013 3.987 3 Si 0.936 3.064 4 H -0.258 1.258 5 H -0.289 1.289 6 H -0.245 1.245 7 C -0.497 4.497 8 H 0.022 0.978 9 C 0.045 3.955 10 H 0.036 0.964 11 C -0.100 4.100 12 C 0.073 3.927 13 H 0.059 0.941 14 C -0.115 4.115 15 C -0.116 4.116 16 C 0.054 3.946 17 N -0.513 5.513 18 C 0.122 3.878 19 C -0.180 4.180 20 C -0.099 4.099 21 C -0.168 4.168 22 C -0.099 4.099 23 C -0.117 4.117 24 H 0.265 0.735 25 H 0.052 0.948 26 H 0.057 0.943 27 H 0.093 0.907 28 H 0.072 0.928 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.054 0.946 32 H 0.088 0.912 33 H 0.140 0.860 34 H 0.152 0.848 35 H 0.133 0.867 36 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.823 -4.924 -1.066 18.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.184 4.184 3 Si 0.760 3.240 4 H -0.183 1.183 5 H -0.216 1.216 6 H -0.169 1.169 7 C -0.535 4.535 8 H 0.041 0.959 9 C 0.026 3.974 10 H 0.054 0.946 11 C -0.138 4.138 12 C -0.032 4.032 13 H 0.077 0.923 14 C -0.153 4.153 15 C -0.154 4.154 16 C -0.071 4.071 17 N -0.226 5.226 18 C 0.021 3.979 19 C -0.201 4.201 20 C -0.117 4.117 21 C -0.187 4.187 22 C -0.118 4.118 23 C -0.120 4.120 24 H 0.074 0.926 25 H 0.071 0.929 26 H 0.076 0.924 27 H 0.111 0.889 28 H 0.091 0.909 29 H 0.108 0.892 30 H 0.110 0.890 31 H 0.072 0.928 32 H 0.107 0.893 33 H 0.157 0.843 34 H 0.169 0.831 35 H 0.151 0.849 36 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 17.445 -5.009 -1.482 18.210 hybrid contribution -0.581 0.983 0.590 1.286 sum 16.864 -4.026 -0.892 17.361 Atomic orbital electron populations 1.70078 1.08211 1.27976 1.52684 1.25883 0.95406 1.02806 0.94279 0.85947 0.79426 0.78714 0.79896 1.18253 1.21552 1.16908 1.21017 0.91057 0.92725 1.48717 0.95936 1.18251 0.94153 0.91672 0.93311 0.94593 1.21773 0.93834 0.99531 0.98665 1.22713 0.96277 0.85396 0.98846 0.92341 1.22409 0.96970 1.00196 0.95686 1.22680 0.97900 0.94851 0.99949 1.22629 0.84982 1.00103 0.99346 1.57692 1.23644 1.10554 1.30713 1.18404 0.95593 0.95456 0.88407 1.21034 1.03905 0.97098 0.98101 1.21143 0.95349 0.99758 0.95462 1.21148 1.00344 0.95351 1.01897 1.21058 0.98076 0.97128 0.95519 1.20086 0.97079 0.98123 0.96702 0.92566 0.92925 0.92436 0.88877 0.90915 0.89208 0.89006 0.92783 0.89330 0.84275 0.83080 0.84869 0.88381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.35 13.96 21.45 0.30 -60.05 16 2 C 0.01 0.77 5.47 84.65 0.46 1.23 16 3 Si 0.94 44.29 25.82 68.60 1.77 46.06 16 4 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 5 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 6 H -0.25 -10.79 6.12 99.48 0.61 -10.18 16 7 C -0.50 -29.30 7.82 25.60 0.20 -29.10 16 8 H 0.02 1.51 8.05 -2.91 -0.02 1.49 16 9 C 0.04 2.19 1.82 -12.13 -0.02 2.17 16 10 H 0.04 1.79 5.75 -2.39 -0.01 1.78 16 11 C -0.10 -4.24 4.76 30.60 0.15 -4.09 16 12 C 0.07 2.45 2.65 44.71 0.12 2.56 16 13 H 0.06 1.96 8.13 -2.39 -0.02 1.94 16 14 C -0.11 -2.79 6.62 31.67 0.21 -2.58 16 15 C -0.12 -2.17 6.99 32.08 0.22 -1.95 16 16 C 0.05 1.29 5.66 87.15 0.49 1.78 16 17 N -0.51 -17.37 4.34 -667.11 -2.90 -20.27 16 18 C 0.12 4.69 5.94 38.71 0.23 4.92 16 19 C -0.18 -5.78 9.18 22.42 0.21 -5.57 16 20 C -0.10 -3.00 10.05 22.20 0.22 -2.78 16 21 C -0.17 -5.95 10.03 22.22 0.22 -5.73 16 22 C -0.10 -4.37 9.08 22.30 0.20 -4.16 16 23 C -0.12 -5.29 5.31 -19.53 -0.10 -5.40 16 24 H 0.27 15.76 8.31 -92.70 -0.77 14.99 16 25 H 0.05 2.44 8.01 -2.39 -0.02 2.42 16 26 H 0.06 2.34 6.38 -2.39 -0.02 2.33 16 27 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.07 1.86 8.09 -2.39 -0.02 1.85 16 29 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.05 1.20 7.81 -2.39 -0.02 1.18 16 32 H 0.09 1.88 8.14 -2.38 -0.02 1.86 16 33 H 0.14 3.57 7.13 -2.91 -0.02 3.55 16 34 H 0.15 3.35 8.06 -2.91 -0.02 3.32 16 35 H 0.13 3.97 8.06 -2.91 -0.02 3.95 16 36 H 0.10 4.73 7.65 -2.91 -0.02 4.71 16 Total: -1.00 -69.78 279.81 2.94 -66.83 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: 0.96 Total: 16.11 kcal Atomic # 6 Polarization: -51.51 SS G_CDS: 2.81 Total: -48.69 kcal Atomic # 7 Polarization: -77.72 SS G_CDS: -2.60 Total: -80.31 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 1.77 Total: 46.06 kcal Total: -69.78 2.94 -66.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259694847.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.913 kcal (2) G-P(sol) polarization free energy of solvation -69.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds