Wall clock time and date at job start Mon Mar 30 2020 05:35:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00114 * 2 1 4 4 H 1.48493 * 109.47104 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47023 * 300.00544 * 3 2 1 6 6 H 1.48498 * 109.46834 * 60.00212 * 3 2 1 7 7 C 1.37878 * 119.99998 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99980 * 185.25404 * 7 2 1 9 9 C 1.50704 * 119.99588 * 5.25393 * 7 2 1 10 10 H 1.08995 * 109.01714 * 334.06657 * 9 7 2 11 11 C 1.53422 * 109.07927 * 93.08221 * 9 7 2 12 12 C 1.52577 * 106.90226 * 160.65999 * 11 9 7 13 13 H 1.08992 * 111.22612 * 52.23849 * 12 11 9 14 14 C 1.53940 * 113.32749 * 179.42531 * 12 11 9 15 15 C 1.55385 * 102.08596 * 153.68735 * 14 12 11 16 16 C 1.54924 * 104.96453 * 337.75795 * 15 14 12 17 17 N 1.45932 * 105.79229 * 356.46370 * 16 15 14 18 18 C 1.37470 * 119.52880 * 155.98819 * 17 16 15 19 19 C 1.39189 * 120.05055 * 24.55412 * 18 17 16 20 20 C 1.37889 * 120.41921 * 178.69102 * 19 18 17 21 21 C 1.38316 * 119.79665 * 359.70225 * 20 19 18 22 22 C 1.37988 * 120.06170 * 0.95546 * 21 20 19 23 23 C 1.38617 * 120.72297 * 359.45927 * 22 21 20 24 24 H 0.97002 * 120.00102 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.96181 * 41.31363 * 11 9 7 26 26 H 1.08991 * 110.04156 * 280.05223 * 11 9 7 27 27 H 1.08998 * 110.91151 * 271.88314 * 14 12 11 28 28 H 1.09003 * 110.91044 * 35.48865 * 14 12 11 29 29 H 1.09004 * 110.34591 * 96.63159 * 15 14 12 30 30 H 1.09000 * 110.34180 * 218.78280 * 15 14 12 31 31 H 1.09002 * 110.18410 * 237.38186 * 16 15 14 32 32 H 1.09000 * 110.17945 * 115.54334 * 16 15 14 33 33 H 1.08002 * 119.78968 * 358.66224 * 19 18 17 34 34 H 1.08002 * 120.10170 * 180.02562 * 20 19 18 35 35 H 1.07995 * 119.96912 * 180.69980 * 21 20 19 36 36 H 1.08004 * 119.63819 * 179.73237 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0810 -1.1961 0.0851 9 6 1.2557 -2.4963 -0.1206 10 1 0.2426 -2.3597 0.2576 11 6 1.1886 -2.9018 -1.5988 12 6 0.8809 -4.3958 -1.6354 13 1 0.0050 -4.6332 -1.0318 14 6 0.7662 -4.9597 -3.0632 15 6 1.1463 -6.4519 -2.8552 16 6 1.9667 -6.4764 -1.5413 17 7 2.0934 -5.0831 -1.1262 18 6 2.3149 -4.7881 0.1981 19 6 2.9119 -5.7295 1.0315 20 6 3.1622 -5.4319 2.3544 21 6 2.8234 -4.1878 2.8550 22 6 2.2188 -3.2550 2.0375 23 6 1.9538 -3.5443 0.7080 24 1 -0.4850 0.8401 0.0004 25 1 2.1462 -2.7071 -2.0819 26 1 0.3979 -2.3465 -2.1030 27 1 -0.2532 -4.8665 -3.4376 28 1 1.4716 -4.4684 -3.7334 29 1 0.2481 -7.0610 -2.7525 30 1 1.7517 -6.8085 -3.6885 31 1 2.9521 -6.9064 -1.7211 32 1 1.4389 -7.0494 -0.7790 33 1 3.1805 -6.6994 0.6396 34 1 3.6260 -6.1661 2.9964 35 1 3.0284 -3.9478 3.8878 36 1 1.9533 -2.2872 2.4367 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259694851.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:10 Heat of formation + Delta-G solvation = 24.033328 kcal Electronic energy + Delta-G solvation = -17730.656031 eV Core-core repulsion = 15178.755715 eV Total energy + Delta-G solvation = -2551.900316 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.24394 -37.21435 -34.47677 -32.28316 -31.70326 -29.59464 -28.04777 -27.22809 -24.53492 -22.58526 -22.06998 -20.79787 -19.82849 -18.66192 -16.77266 -16.22855 -15.66319 -14.77696 -14.57464 -14.35821 -13.61440 -13.48051 -13.24325 -12.54604 -12.40340 -12.17498 -11.79020 -11.68471 -11.41425 -11.18305 -11.02242 -10.94833 -10.58317 -10.45234 -10.33631 -10.21162 -9.92470 -9.24848 -9.10496 -8.96614 -8.50559 -7.81037 -6.84856 -6.03455 -4.05975 2.21128 2.26273 3.28880 3.37533 3.43222 4.23939 4.41657 4.68934 4.84216 5.00266 5.18177 5.26155 5.55784 5.58113 5.67126 5.72463 5.85416 5.89200 5.94159 6.06228 6.12878 6.23060 6.26477 6.39158 6.43931 6.50724 6.76862 6.92256 7.00507 7.08961 7.24387 7.33048 7.54147 7.62529 7.74096 7.91173 7.96464 8.18496 8.40046 9.02091 9.56408 11.04021 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.021412 B = 0.009268 C = 0.006923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.382522 B = 3020.310130 C = 4043.486934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.064 3.936 3 Si 0.890 3.110 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.499 4.499 8 H 0.056 0.944 9 C 0.065 3.935 10 H 0.070 0.930 11 C -0.091 4.091 12 C 0.073 3.927 13 H 0.058 0.942 14 C -0.117 4.117 15 C -0.127 4.127 16 C 0.060 3.940 17 N -0.500 5.500 18 C 0.122 3.878 19 C -0.181 4.181 20 C -0.118 4.118 21 C -0.165 4.165 22 C -0.079 4.079 23 C -0.074 4.074 24 H 0.261 0.739 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.043 0.957 33 H 0.106 0.894 34 H 0.107 0.893 35 H 0.108 0.892 36 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.396 -10.919 -1.969 11.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.138 4.138 3 Si 0.717 3.283 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.537 4.537 8 H 0.074 0.926 9 C 0.047 3.953 10 H 0.088 0.912 11 C -0.130 4.130 12 C -0.032 4.032 13 H 0.076 0.924 14 C -0.155 4.155 15 C -0.166 4.166 16 C -0.066 4.066 17 N -0.213 5.213 18 C 0.023 3.977 19 C -0.203 4.203 20 C -0.137 4.137 21 C -0.184 4.184 22 C -0.097 4.097 23 C -0.077 4.077 24 H 0.071 0.929 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.089 0.911 28 H 0.095 0.905 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.061 0.939 33 H 0.124 0.876 34 H 0.125 0.875 35 H 0.126 0.874 36 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 1.633 -10.666 -2.257 11.024 hybrid contribution 0.105 0.588 0.431 0.737 sum 1.738 -10.078 -1.825 10.388 Atomic orbital electron populations 1.69915 1.05893 1.26593 1.50829 1.24974 0.94839 0.99138 0.94814 0.86565 0.80350 0.83760 0.77575 1.19666 1.20979 1.21061 1.21040 0.93257 0.89550 1.49869 0.92551 1.18028 0.97405 0.90610 0.89272 0.91229 1.21765 1.01024 0.89612 1.00558 1.22812 0.89296 0.97279 0.93847 0.92444 1.22416 1.01460 0.94519 0.97084 1.22670 0.99390 0.97551 0.96943 1.22393 0.99909 0.88090 0.96226 1.57679 1.37547 1.10826 1.15234 1.18286 0.98790 0.94318 0.86354 1.20651 1.06868 0.98513 0.94218 1.20625 1.01433 0.96799 0.94830 1.20886 1.03507 0.94583 0.99410 1.21073 0.96674 0.98796 0.93193 1.20570 0.98939 0.93080 0.95079 0.92922 0.91977 0.91933 0.91091 0.90526 0.91585 0.91196 0.90822 0.93905 0.87600 0.87493 0.87435 0.85710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.18 12.76 55.43 0.71 -24.47 16 2 C 0.06 1.74 5.45 -17.82 -0.10 1.64 16 3 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 4 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.50 -13.48 7.28 -34.44 -0.25 -13.73 16 8 H 0.06 1.57 7.82 -52.49 -0.41 1.16 16 9 C 0.07 1.61 2.35 -92.68 -0.22 1.40 16 10 H 0.07 1.91 7.23 -51.93 -0.38 1.53 16 11 C -0.09 -2.02 5.11 -26.73 -0.14 -2.15 16 12 C 0.07 1.35 2.64 -66.62 -0.18 1.18 16 13 H 0.06 1.11 8.13 -51.93 -0.42 0.69 16 14 C -0.12 -1.71 6.62 -24.98 -0.17 -1.87 16 15 C -0.13 -1.60 6.99 -24.45 -0.17 -1.77 16 16 C 0.06 0.88 5.66 -3.33 -0.02 0.86 16 17 N -0.50 -9.31 4.35 -162.22 -0.71 -10.02 16 18 C 0.12 2.50 5.94 -84.63 -0.50 2.00 16 19 C -0.18 -3.31 9.15 -39.36 -0.36 -3.67 16 20 C -0.12 -2.06 10.05 -39.68 -0.40 -2.45 16 21 C -0.16 -3.06 10.04 -39.64 -0.40 -3.46 16 22 C -0.08 -1.71 9.10 -39.53 -0.36 -2.06 16 23 C -0.07 -1.68 5.30 -104.11 -0.55 -2.23 16 24 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 25 H 0.06 1.43 8.01 -51.93 -0.42 1.02 16 26 H 0.06 1.42 8.14 -51.93 -0.42 0.99 16 27 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.08 1.13 8.09 -51.93 -0.42 0.71 16 29 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.04 0.61 7.76 -51.93 -0.40 0.21 16 33 H 0.11 1.69 7.11 -52.49 -0.37 1.32 16 34 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 35 H 0.11 1.72 8.06 -52.49 -0.42 1.29 16 36 H 0.12 2.81 7.66 -52.48 -0.40 2.41 16 LS Contribution 286.61 15.07 4.32 4.32 Total: -1.00 -28.37 286.61 -9.82 -38.20 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -5.32 Total: 2.16 kcal Atomic # 6 Polarization: -22.52 SS G_CDS: -3.80 Total: -26.33 kcal Atomic # 7 Polarization: -34.49 SS G_CDS: 0.00 Total: -34.49 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -28.37 -9.82 -38.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259694851.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.228 kcal (2) G-P(sol) polarization free energy of solvation -28.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds