Wall clock time and date at job start Mon Mar 30 2020 05:35:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00114 * 2 1 4 4 H 1.48493 * 109.47104 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47023 * 300.00544 * 3 2 1 6 6 H 1.48498 * 109.46834 * 60.00212 * 3 2 1 7 7 C 1.37878 * 119.99998 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99980 * 185.25404 * 7 2 1 9 9 C 1.50704 * 119.99588 * 5.25393 * 7 2 1 10 10 H 1.08995 * 109.01714 * 334.06657 * 9 7 2 11 11 C 1.53422 * 109.07927 * 93.08221 * 9 7 2 12 12 C 1.52577 * 106.90226 * 160.65999 * 11 9 7 13 13 H 1.08992 * 111.22612 * 52.23849 * 12 11 9 14 14 C 1.53940 * 113.32749 * 179.42531 * 12 11 9 15 15 C 1.55385 * 102.08596 * 153.68735 * 14 12 11 16 16 C 1.54924 * 104.96453 * 337.75795 * 15 14 12 17 17 N 1.45932 * 105.79229 * 356.46370 * 16 15 14 18 18 C 1.37470 * 119.52880 * 155.98819 * 17 16 15 19 19 C 1.39189 * 120.05055 * 24.55412 * 18 17 16 20 20 C 1.37889 * 120.41921 * 178.69102 * 19 18 17 21 21 C 1.38316 * 119.79665 * 359.70225 * 20 19 18 22 22 C 1.37988 * 120.06170 * 0.95546 * 21 20 19 23 23 C 1.38617 * 120.72297 * 359.45927 * 22 21 20 24 24 H 0.97002 * 120.00102 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.96181 * 41.31363 * 11 9 7 26 26 H 1.08991 * 110.04156 * 280.05223 * 11 9 7 27 27 H 1.08998 * 110.91151 * 271.88314 * 14 12 11 28 28 H 1.09003 * 110.91044 * 35.48865 * 14 12 11 29 29 H 1.09004 * 110.34591 * 96.63159 * 15 14 12 30 30 H 1.09000 * 110.34180 * 218.78280 * 15 14 12 31 31 H 1.09002 * 110.18410 * 237.38186 * 16 15 14 32 32 H 1.09000 * 110.17945 * 115.54334 * 16 15 14 33 33 H 1.08002 * 119.78968 * 358.66224 * 19 18 17 34 34 H 1.08002 * 120.10170 * 180.02562 * 20 19 18 35 35 H 1.07995 * 119.96912 * 180.69980 * 21 20 19 36 36 H 1.08004 * 119.63819 * 179.73237 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0810 -1.1961 0.0851 9 6 1.2557 -2.4963 -0.1206 10 1 0.2426 -2.3597 0.2576 11 6 1.1886 -2.9018 -1.5988 12 6 0.8809 -4.3958 -1.6354 13 1 0.0050 -4.6332 -1.0318 14 6 0.7662 -4.9597 -3.0632 15 6 1.1463 -6.4519 -2.8552 16 6 1.9667 -6.4764 -1.5413 17 7 2.0934 -5.0831 -1.1262 18 6 2.3149 -4.7881 0.1981 19 6 2.9119 -5.7295 1.0315 20 6 3.1622 -5.4319 2.3544 21 6 2.8234 -4.1878 2.8550 22 6 2.2188 -3.2550 2.0375 23 6 1.9538 -3.5443 0.7080 24 1 -0.4850 0.8401 0.0004 25 1 2.1462 -2.7071 -2.0819 26 1 0.3979 -2.3465 -2.1030 27 1 -0.2532 -4.8665 -3.4376 28 1 1.4716 -4.4684 -3.7334 29 1 0.2481 -7.0610 -2.7525 30 1 1.7517 -6.8085 -3.6885 31 1 2.9521 -6.9064 -1.7211 32 1 1.4389 -7.0494 -0.7790 33 1 3.1805 -6.6994 0.6396 34 1 3.6260 -6.1661 2.9964 35 1 3.0284 -3.9478 3.8878 36 1 1.9533 -2.2872 2.4367 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259694851.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:10 Heat of formation + Delta-G solvation = 8.888362 kcal Electronic energy + Delta-G solvation = -17731.312766 eV Core-core repulsion = 15178.755715 eV Total energy + Delta-G solvation = -2552.557051 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.71500 -38.62997 -36.29150 -33.78980 -33.47098 -31.09227 -29.57510 -28.76801 -26.37076 -24.08983 -23.57600 -22.37686 -21.11747 -20.25095 -18.54878 -17.99491 -17.12332 -16.52000 -15.98738 -15.87588 -15.07949 -15.01767 -14.72609 -14.31524 -14.05065 -13.63223 -13.25826 -13.11813 -12.90776 -12.85328 -12.79731 -12.39939 -12.21185 -12.08555 -11.93035 -11.70242 -11.43165 -11.04739 -10.87848 -10.60419 -10.55769 -9.43040 -8.39034 -8.10067 -6.22796 0.68711 0.71742 1.36464 1.38771 1.50818 2.40646 2.84152 3.12737 3.18016 3.67115 3.77371 4.10631 4.20561 4.23695 4.26300 4.38180 4.48558 4.61390 4.69600 4.72402 4.74992 4.84904 4.91701 5.00995 5.11386 5.15730 5.25955 5.29065 5.40938 5.50282 5.52654 5.61713 5.74473 5.78679 6.03876 6.14140 6.26365 6.40418 6.72209 6.89385 7.41606 8.93279 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.021412 B = 0.009268 C = 0.006923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.382522 B = 3020.310130 C = 4043.486934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.016 3.984 3 Si 0.951 3.049 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.279 1.279 7 C -0.508 4.508 8 H 0.040 0.960 9 C 0.067 3.933 10 H 0.028 0.972 11 C -0.082 4.082 12 C 0.076 3.924 13 H 0.045 0.955 14 C -0.112 4.112 15 C -0.116 4.116 16 C 0.055 3.945 17 N -0.511 5.511 18 C 0.114 3.886 19 C -0.180 4.180 20 C -0.104 4.104 21 C -0.166 4.166 22 C -0.101 4.101 23 C -0.114 4.114 24 H 0.263 0.737 25 H 0.046 0.954 26 H 0.044 0.956 27 H 0.087 0.913 28 H 0.073 0.927 29 H 0.086 0.914 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.050 0.950 33 H 0.138 0.862 34 H 0.151 0.849 35 H 0.134 0.866 36 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.686 -13.559 -2.261 14.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.182 4.182 3 Si 0.776 3.224 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.204 1.204 7 C -0.547 4.547 8 H 0.058 0.942 9 C 0.049 3.951 10 H 0.046 0.954 11 C -0.120 4.120 12 C -0.030 4.030 13 H 0.063 0.937 14 C -0.151 4.151 15 C -0.154 4.154 16 C -0.071 4.071 17 N -0.223 5.223 18 C 0.014 3.986 19 C -0.201 4.201 20 C -0.122 4.122 21 C -0.185 4.185 22 C -0.120 4.120 23 C -0.118 4.118 24 H 0.072 0.928 25 H 0.065 0.935 26 H 0.062 0.938 27 H 0.105 0.895 28 H 0.092 0.908 29 H 0.105 0.895 30 H 0.112 0.888 31 H 0.109 0.891 32 H 0.069 0.931 33 H 0.155 0.845 34 H 0.168 0.832 35 H 0.152 0.848 36 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 2.927 -13.321 -2.558 13.877 hybrid contribution -0.262 1.347 0.578 1.489 sum 2.665 -11.975 -1.980 12.427 Atomic orbital electron populations 1.70034 1.07137 1.27322 1.51929 1.25680 0.95618 1.02210 0.94684 0.85612 0.78975 0.79914 0.77852 1.19591 1.20217 1.20425 1.21212 0.92559 0.91276 1.49607 0.94168 1.17851 0.95146 0.91034 0.91113 0.95430 1.21494 0.99411 0.92768 0.98364 1.22653 0.89066 0.94644 0.96587 0.93687 1.22407 1.02563 0.96093 0.93988 1.22674 1.00359 0.95746 0.96579 1.22625 1.01502 0.85563 0.97368 1.57679 1.37082 1.13346 1.14242 1.18460 0.98783 0.93783 0.87596 1.21030 1.05654 0.99084 0.94321 1.21116 0.99415 0.96661 0.95011 1.21152 1.02560 0.94555 1.00257 1.21025 0.98482 0.98825 0.93653 1.20441 1.01545 0.94225 0.95546 0.92825 0.93514 0.93754 0.89488 0.90828 0.89509 0.88762 0.89078 0.93136 0.84453 0.83151 0.84784 0.88454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.79 12.76 21.45 0.27 -54.52 16 2 C 0.02 0.93 5.45 84.66 0.46 1.39 16 3 Si 0.95 44.94 29.54 68.60 2.03 46.97 16 4 H -0.27 -12.66 7.11 99.48 0.71 -11.96 16 5 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 6 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 7 C -0.51 -29.15 7.28 25.60 0.19 -28.96 16 8 H 0.04 2.37 7.82 -2.92 -0.02 2.35 16 9 C 0.07 3.55 2.35 -12.13 -0.03 3.52 16 10 H 0.03 1.65 7.23 -2.39 -0.02 1.64 16 11 C -0.08 -3.83 5.11 30.60 0.16 -3.67 16 12 C 0.08 2.85 2.64 44.81 0.12 2.96 16 13 H 0.05 1.78 8.13 -2.39 -0.02 1.77 16 14 C -0.11 -3.10 6.62 31.73 0.21 -2.88 16 15 C -0.12 -2.45 6.99 32.07 0.22 -2.22 16 16 C 0.05 1.41 5.66 87.14 0.49 1.90 16 17 N -0.51 -18.41 4.35 -667.14 -2.90 -21.31 16 18 C 0.11 4.60 5.94 38.72 0.23 4.83 16 19 C -0.18 -6.01 9.15 22.42 0.21 -5.80 16 20 C -0.10 -3.24 10.05 22.21 0.22 -3.02 16 21 C -0.17 -5.96 10.04 22.23 0.22 -5.74 16 22 C -0.10 -4.55 9.10 22.30 0.20 -4.35 16 23 C -0.11 -5.43 5.30 -19.53 -0.10 -5.53 16 24 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 25 H 0.05 2.27 8.01 -2.39 -0.02 2.25 16 26 H 0.04 2.15 8.14 -2.39 -0.02 2.13 16 27 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 28 H 0.07 2.07 8.09 -2.39 -0.02 2.05 16 29 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.05 1.25 7.76 -2.39 -0.02 1.23 16 33 H 0.14 3.71 7.11 -2.91 -0.02 3.69 16 34 H 0.15 3.44 8.06 -2.91 -0.02 3.41 16 35 H 0.13 4.00 8.06 -2.91 -0.02 3.97 16 36 H 0.10 4.76 7.66 -2.91 -0.02 4.74 16 Total: -1.00 -65.36 286.61 3.25 -62.11 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: 1.05 Total: 14.31 kcal Atomic # 6 Polarization: -50.37 SS G_CDS: 2.80 Total: -47.57 kcal Atomic # 7 Polarization: -73.20 SS G_CDS: -2.63 Total: -75.82 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -65.36 3.25 -62.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259694851.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.999 kcal (2) G-P(sol) polarization free energy of solvation -65.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds