Wall clock time and date at job start Mon Mar 30 2020 05:35:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 120.00168 * 2 1 4 4 H 1.48501 * 109.47277 * 270.00344 * 3 2 1 5 5 H 1.48497 * 109.46991 * 30.00387 * 3 2 1 6 6 H 1.48499 * 109.47135 * 150.00216 * 3 2 1 7 7 C 1.37886 * 119.99906 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99857 * 184.95712 * 7 2 1 9 9 C 1.50697 * 119.99849 * 4.95978 * 7 2 1 10 10 H 1.09010 * 109.06717 * 336.00481 * 9 7 2 11 11 C 1.53408 * 109.08104 * 95.05125 * 9 7 2 12 12 C 1.52594 * 106.91592 * 80.24159 * 11 9 7 13 13 H 1.09002 * 111.90783 * 307.29495 * 12 11 9 14 14 C 1.53967 * 113.26161 * 180.46514 * 12 11 9 15 15 C 1.55391 * 102.09888 * 206.40183 * 14 12 11 16 16 C 1.54927 * 104.95808 * 22.21324 * 15 14 12 17 17 N 1.45898 * 105.78056 * 3.56171 * 16 15 14 18 18 C 1.37430 * 119.68330 * 203.57928 * 17 16 15 19 19 C 1.39190 * 120.05449 * 334.87918 * 18 17 16 20 20 C 1.37896 * 120.43661 * 181.60630 * 19 18 17 21 21 C 1.38296 * 119.77039 * 359.79643 * 20 19 18 22 22 C 1.37974 * 120.10952 * 0.07413 * 21 20 19 23 23 C 1.38633 * 120.68924 * 359.63142 * 22 21 20 24 24 H 0.96996 * 119.99314 * 0.02562 * 1 2 3 25 25 H 1.09005 * 109.96349 * 320.89005 * 11 9 7 26 26 H 1.09006 * 110.03952 * 199.63598 * 11 9 7 27 27 H 1.09003 * 110.90325 * 88.20353 * 14 12 11 28 28 H 1.08995 * 110.94052 * 324.62123 * 14 12 11 29 29 H 1.09006 * 110.34176 * 263.34918 * 15 14 12 30 30 H 1.09000 * 110.34556 * 141.09022 * 15 14 12 31 31 H 1.09000 * 110.18852 * 244.47668 * 16 15 14 32 32 H 1.09001 * 110.18575 * 122.63707 * 16 15 14 33 33 H 1.07994 * 119.78611 * 1.32571 * 19 18 17 34 34 H 1.07999 * 120.11534 * 180.02562 * 20 19 18 35 35 H 1.08001 * 119.94327 * 179.80433 * 21 20 19 36 36 H 1.07998 * 119.65526 * 179.65087 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0815 -1.1959 0.0803 9 6 1.2553 -2.4967 -0.1140 10 1 0.2332 -2.3512 0.2362 11 6 1.2244 -2.9310 -1.5849 12 6 2.5733 -3.5782 -1.8852 13 1 3.4055 -2.9323 -1.6054 14 6 2.7050 -4.0620 -3.3409 15 6 3.7428 -5.2111 -3.2097 16 6 3.6671 -5.6507 -1.7260 17 7 2.5989 -4.8552 -1.1304 18 6 2.5882 -4.6373 0.2264 19 6 3.2182 -5.5365 1.0819 20 6 3.1841 -5.3433 2.4468 21 6 2.5230 -4.2464 2.9687 22 6 1.8984 -3.3495 2.1266 23 6 1.9305 -3.5290 0.7523 24 1 -0.4849 0.8401 -0.0004 25 1 1.0774 -2.0622 -2.2265 26 1 0.4221 -3.6514 -1.7449 27 1 3.0844 -3.2666 -3.9823 28 1 1.7526 -4.4388 -3.7139 29 1 4.7427 -4.8474 -3.4465 30 1 3.4752 -6.0401 -3.8648 31 1 4.6130 -5.4463 -1.2244 32 1 3.4273 -6.7120 -1.6600 33 1 3.7334 -6.3937 0.6743 34 1 3.6751 -6.0441 3.1057 35 1 2.4918 -4.0941 4.0375 36 1 1.3795 -2.4985 2.5424 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259694854.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:13 Heat of formation + Delta-G solvation = 23.915335 kcal Electronic energy + Delta-G solvation = -17822.956589 eV Core-core repulsion = 15271.051157 eV Total energy + Delta-G solvation = -2551.905432 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.21573 -37.18419 -34.50400 -32.24993 -31.67840 -29.55210 -27.99855 -27.17549 -24.57375 -22.56814 -22.03947 -20.91957 -19.81261 -18.69091 -16.64969 -16.25180 -15.57889 -14.72022 -14.50252 -14.30260 -13.64212 -13.58140 -13.23172 -12.55636 -12.41433 -12.02545 -11.73059 -11.66065 -11.44459 -11.29489 -10.98258 -10.89444 -10.72848 -10.46262 -10.31569 -10.25716 -9.72297 -9.35917 -9.07388 -8.93889 -8.50179 -7.79997 -6.83831 -6.04661 -4.09365 2.22387 2.27375 3.27314 3.34735 3.38378 4.26646 4.39166 4.72585 4.88983 5.05231 5.23560 5.25115 5.57371 5.65160 5.69303 5.75514 5.86933 5.92034 6.02025 6.13916 6.16419 6.24500 6.30944 6.41764 6.50068 6.54261 6.75328 6.93759 6.97813 7.11194 7.24060 7.32988 7.56856 7.63297 7.71341 7.86627 7.96226 8.20665 8.36766 8.98625 9.53324 11.01663 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.019580 B = 0.010087 C = 0.007465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.692103 B = 2775.119344 C = 3749.701849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.066 3.934 3 Si 0.889 3.111 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.502 4.502 8 H 0.052 0.948 9 C 0.064 3.936 10 H 0.074 0.926 11 C -0.091 4.091 12 C 0.085 3.915 13 H 0.068 0.932 14 C -0.119 4.119 15 C -0.127 4.127 16 C 0.061 3.939 17 N -0.505 5.505 18 C 0.124 3.876 19 C -0.180 4.180 20 C -0.119 4.119 21 C -0.163 4.163 22 C -0.082 4.082 23 C -0.071 4.071 24 H 0.262 0.738 25 H 0.068 0.932 26 H 0.044 0.956 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.043 0.957 32 H 0.072 0.928 33 H 0.106 0.894 34 H 0.107 0.893 35 H 0.107 0.893 36 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.592 -8.721 -2.599 10.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.136 4.136 3 Si 0.717 3.283 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.540 4.540 8 H 0.070 0.930 9 C 0.045 3.955 10 H 0.092 0.908 11 C -0.129 4.129 12 C -0.020 4.020 13 H 0.086 0.914 14 C -0.157 4.157 15 C -0.165 4.165 16 C -0.065 4.065 17 N -0.218 5.218 18 C 0.024 3.976 19 C -0.202 4.202 20 C -0.138 4.138 21 C -0.183 4.183 22 C -0.101 4.101 23 C -0.074 4.074 24 H 0.072 0.928 25 H 0.087 0.913 26 H 0.062 0.938 27 H 0.089 0.911 28 H 0.092 0.908 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.061 0.939 32 H 0.091 0.909 33 H 0.124 0.876 34 H 0.125 0.875 35 H 0.125 0.875 36 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 5.047 -8.870 -2.743 10.567 hybrid contribution 1.147 1.137 0.280 1.640 sum 6.194 -7.732 -2.463 10.209 Atomic orbital electron populations 1.69911 1.05863 1.26744 1.50360 1.24956 0.94825 0.99064 0.94746 0.86633 0.79971 0.83513 0.78171 1.20601 1.21217 1.19907 1.20972 0.92939 0.89625 1.50452 0.92985 1.18036 0.98099 0.90369 0.88980 0.90762 1.21715 0.92736 0.98145 1.00316 1.22635 1.00585 0.88014 0.90724 0.91400 1.22453 0.99148 0.97238 0.96899 1.22668 0.99553 0.98880 0.95432 1.22359 0.92049 0.97810 0.94275 1.57594 1.43628 1.17127 1.03475 1.18236 0.97486 0.94677 0.87184 1.20652 1.04872 1.00906 0.93721 1.20608 1.00763 0.98052 0.94343 1.20839 1.02052 0.96532 0.98858 1.20987 0.98150 0.98051 0.92888 1.20528 0.98305 0.93505 0.95039 0.92791 0.91346 0.93773 0.91059 0.90817 0.91567 0.91282 0.93916 0.90922 0.87623 0.87497 0.87479 0.86138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.98 12.74 55.43 0.71 -24.27 16 2 C 0.07 1.78 5.45 -17.81 -0.10 1.68 16 3 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.50 -13.30 7.40 -34.44 -0.26 -13.56 16 8 H 0.05 1.41 7.82 -52.49 -0.41 1.00 16 9 C 0.06 1.57 2.36 -92.70 -0.22 1.35 16 10 H 0.07 2.05 7.19 -51.92 -0.37 1.68 16 11 C -0.09 -2.00 5.19 -26.73 -0.14 -2.14 16 12 C 0.09 1.65 2.60 -66.61 -0.17 1.47 16 13 H 0.07 1.44 7.77 -51.93 -0.40 1.04 16 14 C -0.12 -1.81 6.62 -24.96 -0.17 -1.98 16 15 C -0.13 -1.66 6.99 -24.45 -0.17 -1.83 16 16 C 0.06 0.92 5.66 -3.35 -0.02 0.91 16 17 N -0.51 -9.50 4.32 -162.24 -0.70 -10.20 16 18 C 0.12 2.56 5.95 -84.65 -0.50 2.05 16 19 C -0.18 -3.31 9.17 -39.35 -0.36 -3.67 16 20 C -0.12 -2.08 10.05 -39.69 -0.40 -2.48 16 21 C -0.16 -3.05 10.03 -39.66 -0.40 -3.44 16 22 C -0.08 -1.77 9.30 -39.53 -0.37 -2.14 16 23 C -0.07 -1.61 5.12 -104.11 -0.53 -2.15 16 24 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 25 H 0.07 1.58 7.98 -51.93 -0.41 1.16 16 26 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.07 1.10 8.09 -51.93 -0.42 0.68 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.04 0.64 7.82 -51.93 -0.41 0.24 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.11 1.70 7.15 -52.49 -0.38 1.33 16 34 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 35 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 36 H 0.12 2.68 8.05 -52.49 -0.42 2.26 16 LS Contribution 286.82 15.07 4.32 4.32 Total: -1.00 -27.97 286.82 -9.81 -37.78 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -5.32 Total: 2.40 kcal Atomic # 6 Polarization: -22.13 SS G_CDS: -3.80 Total: -25.93 kcal Atomic # 7 Polarization: -34.48 SS G_CDS: 0.01 Total: -34.47 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -27.97 -9.81 -37.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259694854.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.698 kcal (2) G-P(sol) polarization free energy of solvation -27.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds