Wall clock time and date at job start Mon Mar 30 2020 05:35:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 120.00168 * 2 1 4 4 H 1.48501 * 109.47277 * 270.00344 * 3 2 1 5 5 H 1.48497 * 109.46991 * 30.00387 * 3 2 1 6 6 H 1.48499 * 109.47135 * 150.00216 * 3 2 1 7 7 C 1.37886 * 119.99906 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99857 * 184.95712 * 7 2 1 9 9 C 1.50697 * 119.99849 * 4.95978 * 7 2 1 10 10 H 1.09010 * 109.06717 * 336.00481 * 9 7 2 11 11 C 1.53408 * 109.08104 * 95.05125 * 9 7 2 12 12 C 1.52594 * 106.91592 * 80.24159 * 11 9 7 13 13 H 1.09002 * 111.90783 * 307.29495 * 12 11 9 14 14 C 1.53967 * 113.26161 * 180.46514 * 12 11 9 15 15 C 1.55391 * 102.09888 * 206.40183 * 14 12 11 16 16 C 1.54927 * 104.95808 * 22.21324 * 15 14 12 17 17 N 1.45898 * 105.78056 * 3.56171 * 16 15 14 18 18 C 1.37430 * 119.68330 * 203.57928 * 17 16 15 19 19 C 1.39190 * 120.05449 * 334.87918 * 18 17 16 20 20 C 1.37896 * 120.43661 * 181.60630 * 19 18 17 21 21 C 1.38296 * 119.77039 * 359.79643 * 20 19 18 22 22 C 1.37974 * 120.10952 * 0.07413 * 21 20 19 23 23 C 1.38633 * 120.68924 * 359.63142 * 22 21 20 24 24 H 0.96996 * 119.99314 * 0.02562 * 1 2 3 25 25 H 1.09005 * 109.96349 * 320.89005 * 11 9 7 26 26 H 1.09006 * 110.03952 * 199.63598 * 11 9 7 27 27 H 1.09003 * 110.90325 * 88.20353 * 14 12 11 28 28 H 1.08995 * 110.94052 * 324.62123 * 14 12 11 29 29 H 1.09006 * 110.34176 * 263.34918 * 15 14 12 30 30 H 1.09000 * 110.34556 * 141.09022 * 15 14 12 31 31 H 1.09000 * 110.18852 * 244.47668 * 16 15 14 32 32 H 1.09001 * 110.18575 * 122.63707 * 16 15 14 33 33 H 1.07994 * 119.78611 * 1.32571 * 19 18 17 34 34 H 1.07999 * 120.11534 * 180.02562 * 20 19 18 35 35 H 1.08001 * 119.94327 * 179.80433 * 21 20 19 36 36 H 1.07998 * 119.65526 * 179.65087 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0815 -1.1959 0.0803 9 6 1.2553 -2.4967 -0.1140 10 1 0.2332 -2.3512 0.2362 11 6 1.2244 -2.9310 -1.5849 12 6 2.5733 -3.5782 -1.8852 13 1 3.4055 -2.9323 -1.6054 14 6 2.7050 -4.0620 -3.3409 15 6 3.7428 -5.2111 -3.2097 16 6 3.6671 -5.6507 -1.7260 17 7 2.5989 -4.8552 -1.1304 18 6 2.5882 -4.6373 0.2264 19 6 3.2182 -5.5365 1.0819 20 6 3.1841 -5.3433 2.4468 21 6 2.5230 -4.2464 2.9687 22 6 1.8984 -3.3495 2.1266 23 6 1.9305 -3.5290 0.7523 24 1 -0.4849 0.8401 -0.0004 25 1 1.0774 -2.0622 -2.2265 26 1 0.4221 -3.6514 -1.7449 27 1 3.0844 -3.2666 -3.9823 28 1 1.7526 -4.4388 -3.7139 29 1 4.7427 -4.8474 -3.4465 30 1 3.4752 -6.0401 -3.8648 31 1 4.6130 -5.4463 -1.2244 32 1 3.4273 -6.7120 -1.6600 33 1 3.7334 -6.3937 0.6743 34 1 3.6751 -6.0441 3.1057 35 1 2.4918 -4.0941 4.0375 36 1 1.3795 -2.4985 2.5424 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259694854.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:12 Heat of formation + Delta-G solvation = 9.215769 kcal Electronic energy + Delta-G solvation = -17823.594010 eV Core-core repulsion = 15271.051157 eV Total energy + Delta-G solvation = -2552.542853 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.71000 -38.61616 -36.31041 -33.76865 -33.45552 -31.06144 -29.51489 -28.72515 -26.45171 -24.08360 -23.56067 -22.47997 -21.11841 -20.36332 -18.26896 -18.08338 -17.04602 -16.54149 -15.96114 -15.75482 -15.23990 -15.05601 -14.70028 -14.35388 -14.02062 -13.45284 -13.25018 -13.15797 -13.03550 -12.89017 -12.75728 -12.54108 -12.24903 -12.05114 -11.94278 -11.54765 -11.31874 -11.17051 -10.86986 -10.58050 -10.53496 -9.42985 -8.40645 -8.07626 -6.23746 0.68595 0.72371 1.37726 1.38676 1.48740 2.40097 2.83865 3.14188 3.21281 3.67839 3.79233 4.13202 4.20863 4.24893 4.29448 4.36486 4.52115 4.63769 4.69439 4.73109 4.76370 4.84367 4.95467 5.01678 5.11775 5.13325 5.25063 5.31130 5.40972 5.52412 5.54573 5.56159 5.75014 5.78079 6.02403 6.14657 6.24668 6.38305 6.73367 6.89319 7.41169 8.93478 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.019580 B = 0.010087 C = 0.007465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.692103 B = 2775.119344 C = 3749.701849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.017 3.983 3 Si 0.951 3.049 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.504 4.504 8 H 0.040 0.960 9 C 0.065 3.935 10 H 0.028 0.972 11 C -0.083 4.083 12 C 0.088 3.912 13 H 0.043 0.957 14 C -0.115 4.115 15 C -0.116 4.116 16 C 0.056 3.944 17 N -0.512 5.512 18 C 0.114 3.886 19 C -0.179 4.179 20 C -0.105 4.105 21 C -0.164 4.164 22 C -0.105 4.105 23 C -0.110 4.110 24 H 0.263 0.737 25 H 0.046 0.954 26 H 0.041 0.959 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.096 0.904 31 H 0.046 0.954 32 H 0.094 0.906 33 H 0.137 0.863 34 H 0.151 0.849 35 H 0.134 0.866 36 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.976 -10.889 -3.006 13.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.182 4.182 3 Si 0.776 3.224 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.543 4.543 8 H 0.058 0.942 9 C 0.046 3.954 10 H 0.046 0.954 11 C -0.122 4.122 12 C -0.017 4.017 13 H 0.061 0.939 14 C -0.153 4.153 15 C -0.154 4.154 16 C -0.070 4.070 17 N -0.225 5.225 18 C 0.014 3.986 19 C -0.200 4.200 20 C -0.123 4.123 21 C -0.183 4.183 22 C -0.124 4.124 23 C -0.113 4.113 24 H 0.072 0.928 25 H 0.065 0.935 26 H 0.059 0.941 27 H 0.101 0.899 28 H 0.094 0.906 29 H 0.101 0.899 30 H 0.115 0.885 31 H 0.064 0.936 32 H 0.112 0.888 33 H 0.155 0.845 34 H 0.168 0.832 35 H 0.152 0.848 36 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 7.444 -11.052 -3.160 13.695 hybrid contribution 0.396 1.721 0.476 1.829 sum 7.841 -9.331 -2.685 12.480 Atomic orbital electron populations 1.70046 1.07231 1.27391 1.51719 1.25684 0.95568 1.02233 0.94679 0.85670 0.78638 0.79604 0.78481 1.19651 1.20838 1.19686 1.21110 0.92333 0.90973 1.49839 0.94182 1.17863 0.95588 0.91019 0.90909 0.95407 1.21499 0.94971 0.97453 0.98251 1.22443 0.97315 0.88117 0.93847 0.93883 1.22441 1.00448 0.98602 0.93824 1.22674 0.99596 0.98608 0.94501 1.22599 0.90892 0.98267 0.95205 1.57607 1.45399 1.16796 1.02664 1.18421 0.97257 0.94346 0.88590 1.21031 1.03967 1.01019 0.93968 1.21102 0.98989 0.97584 0.94671 1.21117 1.01219 0.96135 0.99867 1.20968 0.99526 0.98621 0.93255 1.20409 1.00721 0.94913 0.95279 0.92826 0.93477 0.94060 0.89903 0.90560 0.89871 0.88545 0.93582 0.88796 0.84509 0.83158 0.84779 0.88721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.70 12.74 21.45 0.27 -54.42 16 2 C 0.02 0.95 5.45 84.66 0.46 1.41 16 3 Si 0.95 44.26 29.54 68.60 2.03 46.28 16 4 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 5 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 6 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 7 C -0.50 -28.26 7.40 25.60 0.19 -28.07 16 8 H 0.04 2.28 7.82 -2.91 -0.02 2.26 16 9 C 0.06 3.42 2.36 -12.14 -0.03 3.39 16 10 H 0.03 1.68 7.19 -2.38 -0.02 1.66 16 11 C -0.08 -3.88 5.19 30.60 0.16 -3.72 16 12 C 0.09 3.42 2.60 44.83 0.12 3.54 16 13 H 0.04 1.87 7.77 -2.39 -0.02 1.85 16 14 C -0.12 -3.29 6.62 31.74 0.21 -3.08 16 15 C -0.12 -2.57 6.99 32.08 0.22 -2.35 16 16 C 0.06 1.48 5.66 87.15 0.49 1.97 16 17 N -0.51 -18.59 4.32 -667.22 -2.88 -21.47 16 18 C 0.11 4.63 5.95 38.72 0.23 4.86 16 19 C -0.18 -6.02 9.17 22.42 0.21 -5.81 16 20 C -0.11 -3.30 10.05 22.20 0.22 -3.08 16 21 C -0.16 -5.89 10.03 22.22 0.22 -5.67 16 22 C -0.10 -4.71 9.30 22.30 0.21 -4.50 16 23 C -0.11 -5.22 5.12 -19.53 -0.10 -5.32 16 24 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 25 H 0.05 2.31 7.98 -2.38 -0.02 2.29 16 26 H 0.04 1.88 8.14 -2.38 -0.02 1.86 16 27 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 28 H 0.08 2.14 8.09 -2.39 -0.02 2.12 16 29 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16 30 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.05 1.21 7.82 -2.39 -0.02 1.19 16 32 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.14 3.74 7.15 -2.91 -0.02 3.72 16 34 H 0.15 3.46 8.06 -2.91 -0.02 3.44 16 35 H 0.13 3.99 8.06 -2.91 -0.02 3.97 16 36 H 0.09 4.58 8.05 -2.91 -0.02 4.56 16 Total: -1.00 -64.36 286.82 3.28 -61.08 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: 1.05 Total: 14.96 kcal Atomic # 6 Polarization: -49.24 SS G_CDS: 2.82 Total: -46.43 kcal Atomic # 7 Polarization: -73.28 SS G_CDS: -2.61 Total: -75.89 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.28 kcal Total: -64.36 3.28 -61.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259694854.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.297 kcal (2) G-P(sol) polarization free energy of solvation -64.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds