Wall clock time and date at job start Mon Mar 30 2020 05:35:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86807 * 120.00194 * 2 1 4 4 H 1.48491 * 109.47141 * 240.00000 * 3 2 1 5 5 H 1.48499 * 109.47031 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47160 * 120.00037 * 3 2 1 7 7 C 1.37878 * 120.00165 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00340 * 185.27807 * 7 2 1 9 9 C 1.50704 * 119.99768 * 5.28835 * 7 2 1 10 10 H 1.08998 * 109.01837 * 23.88131 * 9 7 2 11 11 C 1.53460 * 109.07959 * 264.85800 * 9 7 2 12 12 C 1.52472 * 106.80512 * 278.91058 * 11 9 7 13 13 H 1.08999 * 111.31554 * 51.07930 * 12 11 9 14 14 C 1.53259 * 114.01491 * 176.99612 * 12 11 9 15 15 C 1.55053 * 104.15989 * 143.14108 * 14 12 11 16 16 C 1.55306 * 104.91975 * 357.26328 * 15 14 12 17 17 N 1.46682 * 103.37705 * 336.24548 * 16 15 14 18 18 C 1.37592 * 118.88488 * 166.15346 * 17 16 15 19 19 C 1.39183 * 119.98157 * 28.14731 * 18 17 16 20 20 C 1.37911 * 120.41493 * 178.86374 * 19 18 17 21 21 C 1.38312 * 119.75536 * 0.02562 * 20 19 18 22 22 C 1.37959 * 120.10356 * 0.50988 * 21 20 19 23 23 C 1.38640 * 120.72915 * 359.88283 * 22 21 20 24 24 H 0.96999 * 119.99383 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.98028 * 159.58955 * 11 9 7 26 26 H 1.09000 * 110.06191 * 38.27745 * 11 9 7 27 27 H 1.09007 * 110.49205 * 24.47075 * 14 12 11 28 28 H 1.08998 * 110.60630 * 261.86637 * 14 12 11 29 29 H 1.09002 * 110.34958 * 238.40633 * 15 14 12 30 30 H 1.08995 * 110.44478 * 116.17182 * 15 14 12 31 31 H 1.09002 * 110.64500 * 217.77082 * 16 15 14 32 32 H 1.08996 * 110.64024 * 94.71278 * 16 15 14 33 33 H 1.08005 * 119.79308 * 358.86073 * 19 18 17 34 34 H 1.07993 * 120.11996 * 179.97438 * 20 19 18 35 35 H 1.08009 * 119.94391 * 180.48602 * 21 20 19 36 36 H 1.08001 * 119.63574 * 179.86802 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2843 2.7465 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0811 -1.1961 0.0855 9 6 1.2559 -2.4963 -0.1214 10 1 0.2984 -2.3117 -0.6085 11 6 1.0037 -3.0622 1.2826 12 6 2.2887 -3.7605 1.7138 13 1 3.1542 -3.1098 1.5892 14 6 2.2426 -4.3286 3.1365 15 6 3.0409 -5.6544 3.0415 16 6 3.4276 -5.7818 1.5428 17 7 2.4150 -4.9689 0.8607 18 6 2.6173 -4.6216 -0.4552 19 6 3.3760 -5.4441 -1.2828 20 6 3.5651 -5.1166 -2.6091 21 6 2.9973 -3.9631 -3.1190 22 6 2.2534 -3.1380 -2.3010 23 6 2.0624 -3.4512 -0.9640 24 1 -0.4849 0.8401 0.0004 25 1 0.1823 -3.7781 1.2536 26 1 0.7686 -2.2537 1.9749 27 1 1.2129 -4.5237 3.4363 28 1 2.7204 -3.6449 3.8382 29 1 2.4170 -6.4951 3.3447 30 1 3.9363 -5.6049 3.6611 31 1 3.3692 -6.8206 1.2178 32 1 4.4252 -5.3790 1.3678 33 1 3.8195 -6.3445 -0.8839 34 1 4.1550 -5.7581 -3.2469 35 1 3.1369 -3.7078 -4.1591 36 1 1.8152 -2.2381 -2.7066 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259694858.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:15 Heat of formation + Delta-G solvation = 24.294661 kcal Electronic energy + Delta-G solvation = -17823.605454 eV Core-core repulsion = 15271.716471 eV Total energy + Delta-G solvation = -2551.888983 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.23519 -37.19352 -34.49749 -32.25192 -31.66667 -29.55539 -27.99421 -27.16197 -24.56886 -22.59352 -22.06777 -20.85041 -19.87185 -18.62802 -16.66095 -16.27300 -15.47274 -14.72897 -14.60173 -14.27908 -13.64814 -13.54504 -13.24571 -12.56607 -12.38486 -12.02372 -11.76625 -11.69868 -11.40881 -11.19702 -10.93681 -10.90231 -10.77469 -10.48153 -10.26763 -10.20548 -9.75955 -9.38668 -9.13507 -8.96451 -8.43434 -7.82501 -6.89982 -6.04951 -4.10124 2.18791 2.24899 3.29047 3.34146 3.37427 4.28309 4.39482 4.71922 4.91209 5.06677 5.24461 5.30485 5.56720 5.66092 5.66952 5.74574 5.84823 5.92831 6.05588 6.12161 6.16042 6.22419 6.33839 6.41655 6.49839 6.55290 6.74356 6.93621 6.97877 7.10147 7.23750 7.32969 7.54550 7.60482 7.69203 7.86419 7.93991 8.16796 8.36340 8.97234 9.53166 11.01503 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.019791 B = 0.010025 C = 0.007430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.431053 B = 2792.345955 C = 3767.804483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.066 3.934 3 Si 0.889 3.111 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.503 4.503 8 H 0.052 0.948 9 C 0.066 3.934 10 H 0.071 0.929 11 C -0.088 4.088 12 C 0.080 3.920 13 H 0.064 0.936 14 C -0.119 4.119 15 C -0.121 4.121 16 C 0.053 3.947 17 N -0.493 5.493 18 C 0.116 3.884 19 C -0.176 4.176 20 C -0.120 4.120 21 C -0.161 4.161 22 C -0.084 4.084 23 C -0.070 4.070 24 H 0.263 0.737 25 H 0.043 0.957 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.044 0.956 33 H 0.106 0.894 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.259 -9.000 2.048 10.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.136 4.136 3 Si 0.717 3.283 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.541 4.541 8 H 0.070 0.930 9 C 0.048 3.952 10 H 0.089 0.911 11 C -0.127 4.127 12 C -0.026 4.026 13 H 0.082 0.918 14 C -0.157 4.157 15 C -0.159 4.159 16 C -0.073 4.073 17 N -0.207 5.207 18 C 0.017 3.983 19 C -0.197 4.197 20 C -0.139 4.139 21 C -0.181 4.181 22 C -0.103 4.103 23 C -0.072 4.072 24 H 0.073 0.927 25 H 0.061 0.939 26 H 0.089 0.911 27 H 0.090 0.910 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.094 0.906 32 H 0.062 0.938 33 H 0.125 0.875 34 H 0.126 0.874 35 H 0.126 0.874 36 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 4.663 -9.172 2.104 10.502 hybrid contribution 1.188 1.205 -0.172 1.700 sum 5.850 -7.967 1.933 10.072 Atomic orbital electron populations 1.69924 1.05869 1.26870 1.50068 1.24954 0.94817 0.99021 0.94814 0.86697 0.79675 0.83176 0.78735 1.20194 1.21270 1.20265 1.20925 0.92976 0.89717 1.50516 0.93020 1.18017 0.96236 0.90877 0.90067 0.91134 1.21675 0.93195 0.97629 1.00173 1.22497 1.00866 0.89182 0.90026 0.91785 1.22223 1.00728 0.95908 0.96881 1.22579 0.99812 0.98494 0.95058 1.22703 0.92967 0.97919 0.93705 1.58987 1.42917 1.17798 1.00973 1.18355 0.96744 0.94049 0.89201 1.20679 1.03362 1.00836 0.94807 1.20630 1.00966 0.97468 0.94824 1.20853 1.01633 0.96337 0.99232 1.20994 0.97495 0.98588 0.93184 1.20580 0.98846 0.92628 0.95187 0.92747 0.93867 0.91125 0.91010 0.91377 0.91286 0.91588 0.90631 0.93775 0.87547 0.87438 0.87435 0.86184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.92 12.81 55.43 0.71 -24.21 16 2 C 0.07 1.78 5.45 -17.82 -0.10 1.68 16 3 Si 0.89 20.94 29.54 -169.99 -5.02 15.92 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.50 -13.35 7.38 -34.44 -0.25 -13.60 16 8 H 0.05 1.40 7.82 -52.49 -0.41 0.99 16 9 C 0.07 1.64 2.30 -92.66 -0.21 1.43 16 10 H 0.07 1.94 7.32 -51.93 -0.38 1.56 16 11 C -0.09 -1.97 5.17 -26.76 -0.14 -2.11 16 12 C 0.08 1.55 2.44 -66.99 -0.16 1.39 16 13 H 0.06 1.38 7.73 -51.93 -0.40 0.98 16 14 C -0.12 -1.84 6.66 -25.51 -0.17 -2.01 16 15 C -0.12 -1.60 7.06 -24.42 -0.17 -1.77 16 16 C 0.05 0.81 5.58 -2.72 -0.02 0.79 16 17 N -0.49 -9.30 4.54 -161.76 -0.73 -10.04 16 18 C 0.12 2.38 5.91 -84.58 -0.50 1.88 16 19 C -0.18 -3.21 9.31 -39.35 -0.37 -3.57 16 20 C -0.12 -2.08 10.05 -39.67 -0.40 -2.48 16 21 C -0.16 -2.98 10.03 -39.66 -0.40 -3.37 16 22 C -0.08 -1.80 9.27 -39.54 -0.37 -2.17 16 23 C -0.07 -1.58 5.11 -104.11 -0.53 -2.11 16 24 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 25 H 0.04 0.95 8.14 -51.93 -0.42 0.52 16 26 H 0.07 1.67 7.97 -51.93 -0.41 1.25 16 27 H 0.07 1.09 7.99 -51.92 -0.41 0.67 16 28 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.08 1.03 7.81 -51.93 -0.41 0.62 16 32 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.11 1.70 7.01 -52.48 -0.37 1.33 16 34 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 35 H 0.11 1.70 8.06 -52.48 -0.42 1.27 16 36 H 0.12 2.64 8.05 -52.49 -0.42 2.21 16 LS Contribution 286.76 15.07 4.32 4.32 Total: -1.00 -27.92 286.76 -9.82 -37.74 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -5.31 Total: 2.30 kcal Atomic # 6 Polarization: -22.24 SS G_CDS: -3.79 Total: -26.03 kcal Atomic # 7 Polarization: -34.22 SS G_CDS: -0.02 Total: -34.25 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -27.92 -9.82 -37.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259694858.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.037 kcal (2) G-P(sol) polarization free energy of solvation -27.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.743 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds