Wall clock time and date at job start Mon Mar 30 2020 05:35:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86807 * 120.00194 * 2 1 4 4 H 1.48491 * 109.47141 * 240.00000 * 3 2 1 5 5 H 1.48499 * 109.47031 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47160 * 120.00037 * 3 2 1 7 7 C 1.37878 * 120.00165 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00340 * 185.27807 * 7 2 1 9 9 C 1.50704 * 119.99768 * 5.28835 * 7 2 1 10 10 H 1.08998 * 109.01837 * 23.88131 * 9 7 2 11 11 C 1.53460 * 109.07959 * 264.85800 * 9 7 2 12 12 C 1.52472 * 106.80512 * 278.91058 * 11 9 7 13 13 H 1.08999 * 111.31554 * 51.07930 * 12 11 9 14 14 C 1.53259 * 114.01491 * 176.99612 * 12 11 9 15 15 C 1.55053 * 104.15989 * 143.14108 * 14 12 11 16 16 C 1.55306 * 104.91975 * 357.26328 * 15 14 12 17 17 N 1.46682 * 103.37705 * 336.24548 * 16 15 14 18 18 C 1.37592 * 118.88488 * 166.15346 * 17 16 15 19 19 C 1.39183 * 119.98157 * 28.14731 * 18 17 16 20 20 C 1.37911 * 120.41493 * 178.86374 * 19 18 17 21 21 C 1.38312 * 119.75536 * 0.02562 * 20 19 18 22 22 C 1.37959 * 120.10356 * 0.50988 * 21 20 19 23 23 C 1.38640 * 120.72915 * 359.88283 * 22 21 20 24 24 H 0.96999 * 119.99383 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.98028 * 159.58955 * 11 9 7 26 26 H 1.09000 * 110.06191 * 38.27745 * 11 9 7 27 27 H 1.09007 * 110.49205 * 24.47075 * 14 12 11 28 28 H 1.08998 * 110.60630 * 261.86637 * 14 12 11 29 29 H 1.09002 * 110.34958 * 238.40633 * 15 14 12 30 30 H 1.08995 * 110.44478 * 116.17182 * 15 14 12 31 31 H 1.09002 * 110.64500 * 217.77082 * 16 15 14 32 32 H 1.08996 * 110.64024 * 94.71278 * 16 15 14 33 33 H 1.08005 * 119.79308 * 358.86073 * 19 18 17 34 34 H 1.07993 * 120.11996 * 179.97438 * 20 19 18 35 35 H 1.08009 * 119.94391 * 180.48602 * 21 20 19 36 36 H 1.08001 * 119.63574 * 179.86802 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2843 2.7465 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0811 -1.1961 0.0855 9 6 1.2559 -2.4963 -0.1214 10 1 0.2984 -2.3117 -0.6085 11 6 1.0037 -3.0622 1.2826 12 6 2.2887 -3.7605 1.7138 13 1 3.1542 -3.1098 1.5892 14 6 2.2426 -4.3286 3.1365 15 6 3.0409 -5.6544 3.0415 16 6 3.4276 -5.7818 1.5428 17 7 2.4150 -4.9689 0.8607 18 6 2.6173 -4.6216 -0.4552 19 6 3.3760 -5.4441 -1.2828 20 6 3.5651 -5.1166 -2.6091 21 6 2.9973 -3.9631 -3.1190 22 6 2.2534 -3.1380 -2.3010 23 6 2.0624 -3.4512 -0.9640 24 1 -0.4849 0.8401 0.0004 25 1 0.1823 -3.7781 1.2536 26 1 0.7686 -2.2537 1.9749 27 1 1.2129 -4.5237 3.4363 28 1 2.7204 -3.6449 3.8382 29 1 2.4170 -6.4951 3.3447 30 1 3.9363 -5.6049 3.6611 31 1 3.3692 -6.8206 1.2178 32 1 4.4252 -5.3790 1.3678 33 1 3.8195 -6.3445 -0.8839 34 1 4.1550 -5.7581 -3.2469 35 1 3.1369 -3.7078 -4.1591 36 1 1.8152 -2.2381 -2.7066 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259694858.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:15 Heat of formation + Delta-G solvation = 9.476000 kcal Electronic energy + Delta-G solvation = -17824.248040 eV Core-core repulsion = 15271.716471 eV Total energy + Delta-G solvation = -2552.531569 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.73334 -38.62298 -36.30854 -33.76845 -33.45136 -31.06407 -29.50533 -28.72032 -26.45059 -24.08492 -23.60333 -22.44179 -21.17973 -20.29036 -18.28669 -18.09553 -16.96950 -16.47757 -16.12937 -15.72050 -15.27115 -15.02060 -14.67884 -14.36128 -14.01212 -13.44786 -13.27847 -13.17531 -13.02034 -12.85662 -12.71430 -12.59802 -12.22124 -12.03322 -11.95584 -11.49262 -11.37929 -11.15090 -10.93701 -10.63249 -10.47319 -9.43895 -8.45700 -8.09293 -6.24695 0.66545 0.70836 1.38023 1.39316 1.47213 2.39798 2.85303 3.13775 3.22955 3.68878 3.78486 4.12707 4.21583 4.25040 4.30544 4.37070 4.53195 4.62770 4.67630 4.71393 4.74650 4.82329 4.96955 5.03098 5.11899 5.13098 5.21598 5.32177 5.41088 5.51765 5.53183 5.56191 5.74060 5.77365 6.00447 6.11563 6.23343 6.36400 6.69330 6.87609 7.40773 8.92905 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.019791 B = 0.010025 C = 0.007430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.431053 B = 2792.345955 C = 3767.804483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.017 3.983 3 Si 0.950 3.050 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.270 1.270 7 C -0.506 4.506 8 H 0.040 0.960 9 C 0.068 3.932 10 H 0.024 0.976 11 C -0.081 4.081 12 C 0.084 3.916 13 H 0.038 0.962 14 C -0.117 4.117 15 C -0.110 4.110 16 C 0.049 3.951 17 N -0.500 5.500 18 C 0.105 3.895 19 C -0.174 4.174 20 C -0.106 4.106 21 C -0.161 4.161 22 C -0.106 4.106 23 C -0.109 4.109 24 H 0.263 0.737 25 H 0.039 0.961 26 H 0.046 0.954 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.099 0.901 32 H 0.046 0.954 33 H 0.139 0.861 34 H 0.152 0.848 35 H 0.135 0.865 36 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.635 -11.260 2.315 13.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.182 4.182 3 Si 0.775 3.225 4 H -0.199 1.199 5 H -0.207 1.207 6 H -0.195 1.195 7 C -0.545 4.545 8 H 0.059 0.941 9 C 0.049 3.951 10 H 0.042 0.958 11 C -0.119 4.119 12 C -0.022 4.022 13 H 0.056 0.944 14 C -0.155 4.155 15 C -0.148 4.148 16 C -0.076 4.076 17 N -0.214 5.214 18 C 0.006 3.994 19 C -0.195 4.195 20 C -0.124 4.124 21 C -0.180 4.180 22 C -0.125 4.125 23 C -0.112 4.112 24 H 0.072 0.928 25 H 0.057 0.943 26 H 0.064 0.936 27 H 0.091 0.909 28 H 0.098 0.902 29 H 0.105 0.895 30 H 0.111 0.889 31 H 0.117 0.883 32 H 0.064 0.936 33 H 0.156 0.844 34 H 0.169 0.831 35 H 0.153 0.847 36 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 7.052 -11.446 2.379 13.653 hybrid contribution 0.451 1.827 -0.325 1.910 sum 7.503 -9.619 2.054 12.371 Atomic orbital electron populations 1.70053 1.07223 1.27483 1.51407 1.25682 0.95568 1.02194 0.94732 0.85737 0.78526 0.79337 0.78875 1.19892 1.20737 1.19468 1.21077 0.92395 0.91049 1.49937 0.94126 1.17837 0.94349 0.91493 0.91373 0.95767 1.21449 0.95077 0.96949 0.98430 1.22292 0.97593 0.89325 0.92957 0.94409 1.22222 1.01689 0.97557 0.94054 1.22588 1.00778 0.97251 0.94147 1.22933 0.91943 0.98263 0.94491 1.58996 1.44624 1.17393 1.00358 1.18549 0.96779 0.93620 0.90502 1.21061 1.02188 1.01225 0.94987 1.21131 0.99566 0.96817 0.94930 1.21141 1.00520 0.96211 1.00164 1.20984 0.99064 0.98909 0.93562 1.20443 1.00924 0.94188 0.95641 0.92820 0.94275 0.93566 0.90906 0.90234 0.89457 0.88928 0.88300 0.93610 0.84373 0.83064 0.84668 0.88604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.56 12.81 21.45 0.27 -54.29 16 2 C 0.02 0.95 5.45 84.65 0.46 1.41 16 3 Si 0.95 44.30 29.54 68.60 2.03 46.33 16 4 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 5 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 6 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 7 C -0.51 -28.41 7.38 25.60 0.19 -28.23 16 8 H 0.04 2.31 7.82 -2.91 -0.02 2.29 16 9 C 0.07 3.61 2.30 -12.12 -0.03 3.58 16 10 H 0.02 1.46 7.32 -2.39 -0.02 1.45 16 11 C -0.08 -3.82 5.17 30.57 0.16 -3.66 16 12 C 0.08 3.31 2.44 44.53 0.11 3.42 16 13 H 0.04 1.67 7.73 -2.39 -0.02 1.66 16 14 C -0.12 -3.44 6.66 31.38 0.21 -3.23 16 15 C -0.11 -2.47 7.06 32.09 0.23 -2.24 16 16 C 0.05 1.31 5.58 87.14 0.49 1.79 16 17 N -0.50 -18.26 4.54 -665.69 -3.02 -21.28 16 18 C 0.11 4.26 5.91 38.69 0.23 4.49 16 19 C -0.17 -5.78 9.31 22.42 0.21 -5.57 16 20 C -0.11 -3.28 10.05 22.21 0.22 -3.05 16 21 C -0.16 -5.69 10.03 22.22 0.22 -5.47 16 22 C -0.11 -4.72 9.27 22.30 0.21 -4.51 16 23 C -0.11 -5.14 5.11 -19.53 -0.10 -5.24 16 24 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 25 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 26 H 0.05 2.33 7.97 -2.39 -0.02 2.31 16 27 H 0.07 2.12 7.99 -2.38 -0.02 2.10 16 28 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 29 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.10 2.20 7.81 -2.39 -0.02 2.18 16 32 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.14 3.70 7.01 -2.91 -0.02 3.68 16 34 H 0.15 3.40 8.06 -2.91 -0.02 3.37 16 35 H 0.14 3.93 8.06 -2.91 -0.02 3.91 16 36 H 0.10 4.55 8.05 -2.91 -0.02 4.53 16 Total: -1.00 -64.40 286.76 3.13 -61.27 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: 1.05 Total: 14.48 kcal Atomic # 6 Polarization: -49.31 SS G_CDS: 2.80 Total: -46.51 kcal Atomic # 7 Polarization: -72.82 SS G_CDS: -2.74 Total: -75.56 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Total: -64.40 3.13 -61.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259694858.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.745 kcal (2) G-P(sol) polarization free energy of solvation -64.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds