Wall clock time and date at job start Mon Mar 30 2020 06:16:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50704 * 109.47121 * 2 1 4 4 C 1.37788 * 119.66341 * 265.00002 * 3 2 1 5 5 C 1.39087 * 119.77805 * 179.97438 * 4 3 2 6 6 N 1.37689 * 133.51283 * 180.33975 * 5 4 3 7 7 H 0.96996 * 125.07047 * 359.94334 * 6 5 4 8 8 C 1.36837 * 109.87393 * 180.12070 * 6 5 4 9 9 C 1.34236 * 109.93711 * 359.55777 * 8 6 5 10 10 C 1.40701 * 119.33082 * 0.02562 * 5 4 3 11 11 C 1.39587 * 119.93311 * 359.97383 * 10 5 4 12 12 C 1.36668 * 119.76267 * 0.04605 * 11 10 5 13 13 C 1.50693 * 119.73695 * 179.97438 * 12 11 10 14 14 C 1.53002 * 109.47229 * 264.99958 * 13 12 11 15 15 C 1.50697 * 109.47203 * 179.97438 * 14 13 12 16 16 H 1.08002 * 120.00210 * 0.02562 * 15 14 13 17 17 C 1.37879 * 120.00005 * 179.97438 * 15 14 13 18 18 N 1.31516 * 120.00130 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00132 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47088 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.46873 * 120.00523 * 19 17 15 22 22 H 1.48496 * 109.47068 * 240.00239 * 19 17 15 23 23 H 1.08998 * 109.47273 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46688 * 299.99956 * 1 2 3 25 25 H 1.08989 * 109.47235 * 59.99978 * 1 2 3 26 26 H 1.09000 * 109.47367 * 239.99874 * 2 1 3 27 27 H 1.08999 * 109.47633 * 119.99675 * 2 1 3 28 28 H 1.08000 * 120.11337 * 0.02562 * 4 3 2 29 29 H 1.08002 * 125.03543 * 179.82712 * 8 6 5 30 30 H 1.08002 * 126.50431 * 180.30448 * 9 8 6 31 31 H 1.07999 * 120.12179 * 179.97438 * 11 10 5 32 32 H 1.09001 * 109.47352 * 25.00131 * 13 12 11 33 33 H 1.08999 * 109.47715 * 145.00306 * 13 12 11 34 34 H 1.08992 * 109.47312 * 300.00359 * 14 13 12 35 35 H 1.09009 * 109.46862 * 59.99924 * 14 13 12 36 36 H 0.96998 * 120.00726 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3580 2.0290 -1.1927 5 6 2.8214 3.3404 -1.1956 6 7 3.2132 4.2053 -2.1927 7 1 3.2224 3.9964 -3.1399 8 6 3.5916 5.4022 -1.6482 9 6 3.4533 5.3621 -0.3136 10 6 2.9512 4.0281 0.0250 11 6 2.6155 3.3927 1.2217 12 6 2.1626 2.1034 1.2014 13 6 1.8009 1.4178 2.4936 14 6 2.9977 0.6055 2.9924 15 6 2.6362 -0.0796 4.2850 16 1 1.6512 0.0508 4.7083 17 6 3.5626 -0.8739 4.9269 18 7 4.7620 -1.0331 4.4113 19 14 3.1143 -1.7238 6.5288 20 1 1.7151 -1.3860 6.8936 21 1 3.2407 -3.1939 6.3614 22 1 4.0307 -1.2675 7.6045 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 2.2531 1.4895 -2.1224 29 1 3.9447 6.2547 -2.2094 30 1 3.6705 6.1616 0.3792 31 1 2.7144 3.9175 2.1604 32 1 1.5334 2.1662 3.2396 33 1 0.9541 0.7520 2.3271 34 1 3.2652 -0.1428 2.2465 35 1 3.8446 1.2714 3.1590 36 1 5.4139 -1.5916 4.8629 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259696859.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:23 Heat of formation + Delta-G solvation = 11.666132 kcal Electronic energy + Delta-G solvation = -16821.235858 eV Core-core repulsion = 14268.799261 eV Total energy + Delta-G solvation = -2552.436598 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.06807 -39.15047 -35.56745 -34.33710 -33.42481 -32.01893 -29.84621 -28.88560 -26.69219 -24.54549 -23.77553 -22.31719 -21.29071 -20.84071 -18.84425 -18.49780 -16.75084 -16.51434 -16.33229 -15.44706 -15.33298 -14.75270 -14.53446 -14.42162 -14.09943 -14.09027 -13.81342 -13.50549 -13.30741 -12.83734 -12.78496 -12.48389 -12.17932 -12.03744 -11.85097 -11.73748 -11.36785 -11.32498 -11.05302 -10.52805 -10.52064 -8.84379 -8.50196 -8.16492 -6.28739 0.28050 0.74529 1.40935 1.41359 1.55073 1.90317 2.34905 2.42811 2.98415 3.15614 3.83310 4.00940 4.06291 4.26836 4.32920 4.46852 4.54391 4.61416 4.65133 4.70286 4.88908 4.93991 5.01431 5.06540 5.11518 5.18176 5.25231 5.34028 5.42746 5.56194 5.60651 5.73610 5.83011 5.88802 5.91801 6.04770 6.26406 6.33731 6.84247 6.88551 7.40361 8.94919 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.029447 B = 0.005566 C = 0.005019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.646431 B = 5029.528204 C = 5577.075500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.089 4.089 3 C -0.068 4.068 4 C -0.129 4.129 5 C 0.073 3.927 6 N -0.587 5.587 7 H 0.430 0.570 8 C 0.070 3.930 9 C -0.240 4.240 10 C -0.136 4.136 11 C -0.097 4.097 12 C -0.104 4.104 13 C -0.061 4.061 14 C 0.041 3.959 15 C -0.539 4.539 16 H 0.061 0.939 17 C 0.000 4.000 18 N -0.935 5.935 19 Si 0.965 3.035 20 H -0.260 1.260 21 H -0.277 1.277 22 H -0.279 1.279 23 H 0.068 0.932 24 H 0.045 0.955 25 H 0.065 0.935 26 H 0.081 0.919 27 H 0.057 0.943 28 H 0.143 0.857 29 H 0.216 0.784 30 H 0.154 0.846 31 H 0.112 0.888 32 H 0.051 0.949 33 H 0.069 0.931 34 H -0.004 1.004 35 H -0.020 1.020 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.479 9.804 -15.210 18.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.126 4.126 3 C -0.069 4.069 4 C -0.150 4.150 5 C -0.034 4.034 6 N -0.192 5.192 7 H 0.269 0.731 8 C -0.057 4.057 9 C -0.265 4.265 10 C -0.141 4.141 11 C -0.115 4.115 12 C -0.105 4.105 13 C -0.099 4.099 14 C 0.004 3.996 15 C -0.577 4.577 16 H 0.079 0.921 17 C -0.198 4.198 18 N -0.575 5.575 19 Si 0.790 3.210 20 H -0.184 1.184 21 H -0.203 1.203 22 H -0.205 1.205 23 H 0.087 0.913 24 H 0.064 0.936 25 H 0.084 0.916 26 H 0.100 0.900 27 H 0.075 0.925 28 H 0.161 0.839 29 H 0.232 0.768 30 H 0.171 0.829 31 H 0.130 0.870 32 H 0.070 0.930 33 H 0.087 0.913 34 H 0.014 0.986 35 H -0.002 1.002 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.323 9.727 -15.328 18.918 hybrid contribution 0.337 -0.602 0.817 1.069 sum -4.985 9.125 -14.511 17.852 Atomic orbital electron populations 1.21681 0.93506 1.02277 1.01902 1.20595 0.97295 0.91968 1.02724 1.19585 0.99151 0.96418 0.91737 1.20006 1.04529 0.92156 0.98292 1.18298 1.03367 0.92940 0.88771 1.41755 1.57763 1.11126 1.08578 0.73080 1.22421 1.00048 0.89533 0.93681 1.21974 1.12027 0.96244 0.96255 1.19558 1.05497 0.96369 0.92639 1.20230 0.99949 0.94471 0.96869 1.19570 1.01387 0.94230 0.95356 1.20526 0.98855 0.97957 0.92533 1.18885 0.92642 0.93459 0.94611 1.21731 0.99242 1.28726 1.08043 0.92058 1.25984 0.94773 0.97398 1.01595 1.70128 1.05995 1.40178 1.41225 0.85397 0.78750 0.78108 0.78791 1.18432 1.20253 1.20502 0.91305 0.93553 0.91568 0.90003 0.92479 0.83945 0.76760 0.82859 0.87031 0.92995 0.91296 0.98564 1.00208 0.92849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.77 9.71 71.98 0.70 -3.07 16 2 C -0.09 -2.93 5.36 29.85 0.16 -2.77 16 3 C -0.07 -2.43 5.13 -19.84 -0.10 -2.53 16 4 C -0.13 -3.95 9.69 22.37 0.22 -3.73 16 5 C 0.07 2.20 7.28 39.03 0.28 2.48 16 6 N -0.59 -12.04 6.07 -187.61 -1.14 -13.18 16 7 H 0.43 5.47 8.96 -92.71 -0.83 4.64 16 8 C 0.07 1.30 11.81 83.00 0.98 2.28 16 9 C -0.24 -6.31 11.08 23.51 0.26 -6.05 16 10 C -0.14 -4.66 6.37 -20.20 -0.13 -4.79 16 11 C -0.10 -3.79 9.65 22.23 0.21 -3.57 16 12 C -0.10 -4.27 5.10 -20.10 -0.10 -4.38 16 13 C -0.06 -2.79 4.58 29.85 0.14 -2.65 16 14 C 0.04 2.30 4.77 29.85 0.14 2.44 16 15 C -0.54 -31.75 9.11 25.60 0.23 -31.52 16 16 H 0.06 3.45 7.74 -2.91 -0.02 3.43 16 17 C 0.00 -0.01 5.46 84.65 0.46 0.46 16 18 N -0.93 -58.73 13.29 21.45 0.28 -58.44 16 19 Si 0.97 45.29 29.54 68.60 2.03 47.32 16 20 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 21 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 22 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 23 H 0.07 1.67 8.14 -2.39 -0.02 1.66 16 24 H 0.05 1.39 6.78 -2.38 -0.02 1.37 16 25 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 26 H 0.08 2.31 8.04 -2.39 -0.02 2.29 16 27 H 0.06 2.30 5.56 -2.39 -0.01 2.28 16 28 H 0.14 3.37 8.06 -2.91 -0.02 3.34 16 29 H 0.22 1.76 8.06 -2.91 -0.02 1.74 16 30 H 0.15 3.48 8.06 -2.91 -0.02 3.46 16 31 H 0.11 4.31 8.05 -2.91 -0.02 4.28 16 32 H 0.05 2.31 8.04 -2.39 -0.02 2.29 16 33 H 0.07 2.97 5.56 -2.39 -0.01 2.95 16 34 H 0.00 -0.24 6.78 -2.39 -0.02 -0.25 16 35 H -0.02 -1.27 8.14 -2.38 -0.02 -1.29 16 36 H 0.26 15.42 8.31 -92.71 -0.77 14.64 16 Total: -1.00 -73.06 297.75 4.88 -68.18 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: 0.25 Total: 13.51 kcal Atomic # 6 Polarization: -60.85 SS G_CDS: 3.46 Total: -57.39 kcal Atomic # 7 Polarization: -70.77 SS G_CDS: -0.85 Total: -71.62 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -73.06 4.88 -68.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259696859.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.847 kcal (2) G-P(sol) polarization free energy of solvation -73.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds