Wall clock time and date at job start Mon Mar 30 2020 05:58:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38825 * 119.66599 * 2 1 4 4 C 1.36630 * 120.52705 * 180.02562 * 3 2 1 5 5 C 1.39635 * 119.76447 * 359.97438 * 4 3 2 6 6 C 1.46483 * 134.03170 * 180.02562 * 5 4 3 7 7 C 1.50697 * 126.50493 * 359.97438 * 6 5 4 8 8 H 1.09000 * 109.46810 * 359.97438 * 7 6 5 9 9 C 1.52997 * 109.47604 * 239.97729 * 7 6 5 10 10 C 1.50702 * 109.47175 * 119.97985 * 7 6 5 11 11 H 1.08007 * 119.99829 * 5.46287 * 10 7 6 12 12 C 1.37875 * 120.00228 * 185.46851 * 10 7 6 13 13 N 1.31511 * 120.00229 * 9.57999 * 12 10 7 14 14 Si 1.86799 * 119.99929 * 189.58289 * 12 10 7 15 15 H 1.48504 * 109.47248 * 84.99308 * 14 12 10 16 16 H 1.48499 * 109.47082 * 204.99284 * 14 12 10 17 17 H 1.48501 * 109.47410 * 324.99242 * 14 12 10 18 18 C 1.34241 * 106.99539 * 179.97438 * 6 5 4 19 19 N 1.36825 * 109.93067 * 359.97438 * 18 6 5 20 20 C 1.46499 * 125.06377 * 179.97438 * 19 18 6 21 21 C 1.37694 * 109.87553 * 0.26609 * 19 18 6 22 22 C 1.37746 * 119.66630 * 179.97438 * 2 1 3 23 23 H 1.08997 * 109.47514 * 89.99873 * 1 2 3 24 24 H 1.09005 * 109.47353 * 209.99929 * 1 2 3 25 25 H 1.09002 * 109.47311 * 329.99679 * 1 2 3 26 26 H 1.07996 * 119.74028 * 359.97438 * 3 2 1 27 27 H 1.07998 * 120.11635 * 179.97438 * 4 3 2 28 28 H 1.08997 * 109.46951 * 303.41176 * 9 7 6 29 29 H 1.09006 * 109.47042 * 63.40703 * 9 7 6 30 30 H 1.09000 * 109.47392 * 183.40295 * 9 7 6 31 31 H 0.96995 * 120.00157 * 180.02562 * 13 12 10 32 32 H 1.08006 * 125.03528 * 180.02562 * 18 6 5 33 33 H 1.08998 * 109.47074 * 90.02721 * 20 19 18 34 34 H 1.08996 * 109.47512 * 330.02164 * 20 19 18 35 35 H 1.09006 * 109.47033 * 210.02183 * 20 19 18 36 36 H 1.08005 * 120.11113 * 0.02562 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1941 1.2063 0.0000 4 6 3.5602 1.2268 -0.0005 5 6 4.2715 0.0252 -0.0005 6 6 5.6965 -0.3144 -0.0005 7 6 6.8494 0.6561 -0.0011 8 1 6.4655 1.6762 -0.0019 9 6 7.7043 0.4319 -1.2499 10 6 7.6910 0.4369 1.2297 11 1 7.4706 -0.3845 1.8954 12 6 8.7424 1.2851 1.5059 13 7 8.8977 2.3888 0.8080 14 14 9.9462 0.8663 2.8714 15 1 10.9997 -0.0371 2.3429 16 1 10.5726 2.1135 3.3788 17 1 9.2236 0.1896 3.9783 18 6 5.7805 -1.6542 0.0000 19 7 4.5259 -2.2002 0.0010 20 6 4.2328 -3.6355 0.0013 21 6 3.5799 -1.1997 -0.0050 22 6 2.1887 -1.1969 0.0005 23 1 -0.3634 0.0000 -1.0276 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3634 0.8900 0.5139 26 1 1.6444 2.1359 -0.0004 27 1 4.0880 2.1690 -0.0009 28 1 8.0382 -0.6052 -1.2802 29 1 7.1124 0.6491 -2.1392 30 1 8.5711 1.0921 -1.2203 31 1 9.6375 2.9853 1.0021 32 1 6.7019 -2.2176 0.0006 33 1 4.1603 -3.9914 1.0290 34 1 5.0318 -4.1697 -0.5127 35 1 3.2878 -3.8135 -0.5122 36 1 1.6451 -2.1302 0.0005 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259748009.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:58:26 Heat of formation + Delta-G solvation = 44.956766 kcal Electronic energy + Delta-G solvation = -17036.745455 eV Core-core repulsion = 14485.752447 eV Total energy + Delta-G solvation = -2550.993007 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.69626 -37.00619 -34.60223 -32.46446 -31.00285 -29.87270 -29.14807 -25.90090 -25.27187 -24.91197 -22.04242 -21.32734 -20.20318 -18.33508 -16.28919 -16.13499 -15.50325 -14.84487 -14.70392 -14.40173 -13.58025 -13.46679 -13.40314 -12.73130 -12.65036 -12.30013 -12.08812 -11.96134 -11.77847 -11.50666 -11.10186 -10.90377 -10.82430 -10.56280 -10.46079 -10.23682 -9.98525 -9.33807 -9.05659 -8.65182 -8.26617 -7.49129 -6.74966 -5.94654 -3.96427 1.69140 2.15619 3.34123 3.37565 3.40699 3.42907 3.54258 4.43383 4.53648 5.01401 5.08934 5.28298 5.36816 5.37131 5.48347 5.56834 5.58753 5.63709 5.74295 5.95246 5.98443 6.11845 6.33775 6.47583 6.63085 6.71412 6.88459 7.03460 7.10079 7.13803 7.29064 7.44159 7.58492 7.74693 7.85491 7.96139 8.07967 8.17519 8.52239 9.06163 9.65917 11.13246 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.027262 B = 0.006512 C = 0.005885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.838209 B = 4298.783659 C = 4757.014494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.079 4.079 3 C -0.163 4.163 4 C -0.053 4.053 5 C -0.109 4.109 6 C -0.102 4.102 7 C 0.101 3.899 8 H 0.040 0.960 9 C -0.123 4.123 10 C -0.504 4.504 11 H 0.055 0.945 12 C 0.063 3.937 13 N -0.889 5.889 14 Si 0.886 3.114 15 H -0.281 1.281 16 H -0.288 1.288 17 H -0.276 1.276 18 C 0.019 3.981 19 N -0.497 5.497 20 C 0.087 3.913 21 C 0.097 3.903 22 C -0.140 4.140 23 H 0.063 0.937 24 H 0.058 0.942 25 H 0.062 0.938 26 H 0.114 0.886 27 H 0.122 0.878 28 H 0.026 0.974 29 H 0.012 0.988 30 H 0.065 0.935 31 H 0.260 0.740 32 H 0.161 0.839 33 H 0.060 0.940 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.090 -7.822 -2.790 14.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.080 4.080 3 C -0.182 4.182 4 C -0.071 4.071 5 C -0.114 4.114 6 C -0.108 4.108 7 C 0.082 3.918 8 H 0.058 0.942 9 C -0.181 4.181 10 C -0.542 4.542 11 H 0.073 0.927 12 C -0.138 4.138 13 N -0.528 5.528 14 Si 0.714 3.286 15 H -0.207 1.207 16 H -0.214 1.214 17 H -0.201 1.201 18 C -0.102 4.102 19 N -0.182 5.182 20 C -0.056 4.056 21 C -0.010 4.010 22 C -0.161 4.161 23 H 0.082 0.918 24 H 0.077 0.923 25 H 0.081 0.919 26 H 0.132 0.868 27 H 0.140 0.860 28 H 0.045 0.955 29 H 0.031 0.969 30 H 0.084 0.916 31 H 0.069 0.931 32 H 0.179 0.821 33 H 0.079 0.921 34 H 0.095 0.905 35 H 0.090 0.910 36 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -11.974 -8.028 -2.798 14.685 hybrid contribution 0.809 -0.362 0.828 1.213 sum -11.165 -8.390 -1.970 14.104 Atomic orbital electron populations 1.20688 0.91803 1.02069 1.01613 1.19375 0.95040 0.92473 1.01088 1.20364 0.93909 0.96795 1.07139 1.20356 0.93290 0.97000 0.96464 1.19377 0.93768 0.91998 1.06252 1.21171 0.92596 0.93609 1.03393 1.17269 0.87952 0.92694 0.93849 0.94168 1.21714 1.00678 0.99433 0.96283 1.21141 1.12689 1.12761 1.07637 0.92723 1.24944 0.97973 0.94622 0.96301 1.69963 1.30745 1.10747 1.41343 0.86699 0.81645 0.77763 0.82449 1.20670 1.21376 1.20087 1.21502 0.86221 0.94077 1.08356 1.43678 1.05007 1.04514 1.65004 1.21745 1.02204 0.79514 1.02112 1.18215 0.90488 0.88088 1.04168 1.19640 0.89954 0.97408 1.09143 0.91814 0.92275 0.91863 0.86802 0.85993 0.95505 0.96872 0.91633 0.93053 0.82120 0.92148 0.90485 0.91035 0.87410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.17 9.99 36.00 0.36 -0.81 16 2 C -0.08 -1.19 5.88 -104.59 -0.61 -1.81 16 3 C -0.16 -2.67 9.61 -39.95 -0.38 -3.05 16 4 C -0.05 -1.02 10.05 -39.64 -0.40 -1.42 16 5 C -0.11 -2.32 6.35 -105.14 -0.67 -2.99 16 6 C -0.10 -2.32 5.00 -102.71 -0.51 -2.84 16 7 C 0.10 2.60 2.56 -92.93 -0.24 2.37 16 8 H 0.04 1.13 8.08 -51.93 -0.42 0.71 16 9 C -0.12 -2.97 8.98 37.16 0.33 -2.64 16 10 C -0.50 -13.95 8.34 -34.44 -0.29 -14.24 16 11 H 0.05 1.52 7.69 -52.48 -0.40 1.11 16 12 C 0.06 1.75 5.17 -17.82 -0.09 1.66 16 13 N -0.89 -25.70 12.16 55.43 0.67 -25.03 16 14 Si 0.89 21.43 29.55 -169.99 -5.02 16.41 16 15 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 16 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 17 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 18 C 0.02 0.39 10.60 -16.73 -0.18 0.21 16 19 N -0.50 -8.73 3.18 -121.80 -0.39 -9.12 16 20 C 0.09 1.05 11.03 59.85 0.66 1.71 16 21 C 0.10 1.83 6.81 -83.99 -0.57 1.26 16 22 C -0.14 -2.26 9.59 -39.43 -0.38 -2.64 16 23 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 24 H 0.06 0.58 8.08 -51.93 -0.42 0.17 16 25 H 0.06 0.64 8.08 -51.93 -0.42 0.22 16 26 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 27 H 0.12 2.34 8.06 -52.49 -0.42 1.92 16 28 H 0.03 0.59 7.92 -51.93 -0.41 0.18 16 29 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 1.71 6.84 -51.93 -0.36 1.35 16 31 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 32 H 0.16 2.98 8.06 -52.48 -0.42 2.55 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.08 0.79 8.13 -51.93 -0.42 0.37 16 35 H 0.07 0.74 8.10 -51.93 -0.42 0.32 16 36 H 0.11 1.44 8.06 -52.48 -0.42 1.02 16 LS Contribution 304.07 15.07 4.58 4.58 Total: -1.00 -30.72 304.07 -8.49 -39.21 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: -5.37 Total: -0.83 kcal Atomic # 6 Polarization: -22.25 SS G_CDS: -2.97 Total: -25.22 kcal Atomic # 7 Polarization: -34.43 SS G_CDS: 0.29 Total: -34.15 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -30.72 -8.49 -39.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259748009.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.162 kcal (2) G-P(sol) polarization free energy of solvation -30.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.206 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds