Wall clock time and date at job start Mon Mar 30 2020 05:58:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38822 * 119.67033 * 2 1 4 4 C 1.36632 * 120.53342 * 180.02562 * 3 2 1 5 5 C 1.39629 * 119.76073 * 0.02562 * 4 3 2 6 6 C 1.46490 * 134.03408 * 179.97438 * 5 4 3 7 7 C 1.50698 * 126.50145 * 0.02562 * 6 5 4 8 8 H 1.08998 * 109.46958 * 0.02562 * 7 6 5 9 9 C 1.52993 * 109.47303 * 120.02291 * 7 6 5 10 10 C 1.50704 * 109.47056 * 240.02383 * 7 6 5 11 11 H 1.08001 * 119.99794 * 359.97438 * 10 7 6 12 12 C 1.37865 * 119.99945 * 180.02562 * 10 7 6 13 13 N 1.31519 * 120.00438 * 359.97438 * 12 10 7 14 14 Si 1.86807 * 120.00057 * 179.97438 * 12 10 7 15 15 H 1.48504 * 109.46789 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.46908 * 120.00027 * 14 12 10 17 17 H 1.48494 * 109.47504 * 239.99936 * 14 12 10 18 18 C 1.34244 * 106.99654 * 179.97438 * 6 5 4 19 19 N 1.36833 * 109.93092 * 0.02562 * 18 6 5 20 20 C 1.46499 * 125.06296 * 180.02562 * 19 18 6 21 21 C 1.37692 * 109.87406 * 0.26052 * 19 18 6 22 22 C 1.37747 * 119.66504 * 179.97438 * 2 1 3 23 23 H 1.08999 * 109.47123 * 89.99218 * 1 2 3 24 24 H 1.09000 * 109.46916 * 209.99849 * 1 2 3 25 25 H 1.09000 * 109.46872 * 329.99756 * 1 2 3 26 26 H 1.08007 * 119.73805 * 359.97438 * 3 2 1 27 27 H 1.07991 * 120.11963 * 179.97438 * 4 3 2 28 28 H 1.09003 * 109.47462 * 179.97438 * 9 7 6 29 29 H 1.09002 * 109.47205 * 299.99750 * 9 7 6 30 30 H 1.09000 * 109.47579 * 59.99694 * 9 7 6 31 31 H 0.96998 * 120.00204 * 179.97438 * 13 12 10 32 32 H 1.08003 * 125.03279 * 180.02562 * 18 6 5 33 33 H 1.09002 * 109.47391 * 90.01941 * 20 19 18 34 34 H 1.09001 * 109.46813 * 330.01997 * 20 19 18 35 35 H 1.09004 * 109.47041 * 210.02124 * 20 19 18 36 36 H 1.08006 * 120.11153 * 0.02562 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1942 1.2062 0.0000 4 6 3.5604 1.2268 -0.0005 5 6 4.2716 0.0252 -0.0016 6 6 5.6966 -0.3145 -0.0029 7 6 6.8495 0.6559 -0.0028 8 1 6.4657 1.6761 -0.0012 9 6 7.7053 0.4311 1.2453 10 6 7.6902 0.4374 -1.2344 11 1 7.4171 -0.3280 -1.9457 12 6 8.8083 1.2138 -1.4524 13 7 9.1412 2.1455 -0.5859 14 14 9.8508 0.9424 -2.9786 15 1 9.2664 -0.1570 -3.7880 16 1 9.8807 2.1887 -3.7856 17 1 11.2334 0.5803 -2.5758 18 6 5.7806 -1.6543 -0.0030 19 7 4.5259 -2.2003 -0.0024 20 6 4.2327 -3.6357 -0.0018 21 6 3.5800 -1.1997 -0.0079 22 6 2.1888 -1.1969 0.0005 23 1 -0.3633 0.0001 -1.0276 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5139 26 1 1.6445 2.1360 -0.0004 27 1 4.0881 2.1689 -0.0009 28 1 8.5395 1.1328 1.2452 29 1 7.0973 0.5893 2.1361 30 1 8.0891 -0.5890 1.2439 31 1 9.9282 2.6915 -0.7392 32 1 6.7020 -2.2178 -0.0034 33 1 4.1599 -3.9912 1.0260 34 1 5.0320 -4.1700 -0.5153 35 1 3.2880 -3.8137 -0.5157 36 1 1.6451 -2.1302 0.0005 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259748016.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:58:29 Heat of formation + Delta-G solvation = 46.188555 kcal Electronic energy + Delta-G solvation = -17041.496598 eV Core-core repulsion = 14490.557005 eV Total energy + Delta-G solvation = -2550.939593 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.69691 -37.01023 -34.62165 -32.48483 -30.96979 -29.87207 -29.09619 -25.89942 -25.25239 -24.94351 -22.03122 -21.30044 -20.20417 -18.33092 -16.30420 -16.11338 -15.51613 -14.84993 -14.70538 -14.42919 -13.58290 -13.47205 -13.40851 -12.75357 -12.65941 -12.26779 -12.11004 -11.95793 -11.77393 -11.40570 -11.06892 -10.89757 -10.80070 -10.55756 -10.44317 -10.19710 -9.95364 -9.38985 -9.01990 -8.62188 -8.29237 -7.49523 -6.74261 -5.92199 -3.98254 1.68517 2.14918 3.32528 3.37593 3.40476 3.43991 3.54415 4.42807 4.52691 5.02047 5.08490 5.27334 5.36566 5.38176 5.47502 5.56716 5.58203 5.63779 5.74171 5.94501 5.97834 6.11441 6.33091 6.47323 6.63464 6.74013 6.94214 7.05266 7.13429 7.15604 7.36692 7.44063 7.60318 7.76102 7.87109 7.97065 8.16768 8.21575 8.53045 9.04806 9.65777 11.12913 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.027230 B = 0.006468 C = 0.005910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.018124 B = 4328.021419 C = 4736.655786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.079 4.079 3 C -0.163 4.163 4 C -0.053 4.053 5 C -0.109 4.109 6 C -0.103 4.103 7 C 0.103 3.897 8 H 0.033 0.967 9 C -0.129 4.129 10 C -0.500 4.500 11 H 0.055 0.945 12 C 0.060 3.940 13 N -0.891 5.891 14 Si 0.889 3.111 15 H -0.274 1.274 16 H -0.285 1.285 17 H -0.285 1.285 18 C 0.021 3.979 19 N -0.497 5.497 20 C 0.087 3.913 21 C 0.097 3.903 22 C -0.140 4.140 23 H 0.063 0.937 24 H 0.058 0.942 25 H 0.062 0.938 26 H 0.114 0.886 27 H 0.121 0.879 28 H 0.083 0.917 29 H 0.007 0.993 30 H 0.024 0.976 31 H 0.259 0.741 32 H 0.162 0.838 33 H 0.060 0.940 34 H 0.077 0.923 35 H 0.071 0.929 36 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.463 -7.360 2.127 14.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.080 4.080 3 C -0.182 4.182 4 C -0.072 4.072 5 C -0.115 4.115 6 C -0.109 4.109 7 C 0.084 3.916 8 H 0.051 0.949 9 C -0.187 4.187 10 C -0.539 4.539 11 H 0.073 0.927 12 C -0.141 4.141 13 N -0.531 5.531 14 Si 0.718 3.282 15 H -0.199 1.199 16 H -0.211 1.211 17 H -0.211 1.211 18 C -0.100 4.100 19 N -0.182 5.182 20 C -0.056 4.056 21 C -0.010 4.010 22 C -0.161 4.161 23 H 0.082 0.918 24 H 0.077 0.923 25 H 0.081 0.919 26 H 0.132 0.868 27 H 0.139 0.861 28 H 0.102 0.898 29 H 0.026 0.974 30 H 0.043 0.957 31 H 0.069 0.931 32 H 0.179 0.821 33 H 0.078 0.922 34 H 0.096 0.904 35 H 0.090 0.910 36 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -12.327 -7.594 2.155 14.638 hybrid contribution 0.697 -0.289 -0.901 1.175 sum -11.631 -7.883 1.253 14.106 Atomic orbital electron populations 1.20688 0.91797 1.02022 1.01664 1.19375 0.95043 0.92470 1.01115 1.20362 0.93900 0.96796 1.07144 1.20341 0.93292 0.96956 0.96596 1.19388 0.93790 0.92007 1.06266 1.21191 0.92544 0.93681 1.03468 1.17264 0.87915 0.92192 0.94245 0.94885 1.21767 1.01085 1.00346 0.95499 1.21218 1.08831 1.18053 1.05757 0.92682 1.24956 0.97533 0.95203 0.96385 1.69899 1.26426 1.21513 1.35245 0.86576 0.80196 0.78027 0.83436 1.19912 1.21088 1.21128 1.21511 0.86201 0.94084 1.08174 1.43689 1.05015 1.04523 1.64975 1.21748 1.02316 0.79515 1.02005 1.18219 0.90489 0.88098 1.04159 1.19645 0.89956 0.97414 1.09098 0.91783 0.92279 0.91883 0.86810 0.86053 0.89838 0.97373 0.95715 0.93144 0.82083 0.92186 0.90434 0.91025 0.87401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.16 9.99 36.01 0.36 -0.80 16 2 C -0.08 -1.19 5.88 -104.58 -0.61 -1.81 16 3 C -0.16 -2.65 9.61 -39.95 -0.38 -3.03 16 4 C -0.05 -1.03 10.05 -39.64 -0.40 -1.43 16 5 C -0.11 -2.33 6.35 -105.13 -0.67 -2.99 16 6 C -0.10 -2.36 4.99 -102.71 -0.51 -2.87 16 7 C 0.10 2.65 2.69 -92.93 -0.25 2.40 16 8 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 9 C -0.13 -3.18 8.85 37.15 0.33 -2.85 16 10 C -0.50 -13.85 8.41 -34.44 -0.29 -14.14 16 11 H 0.05 1.53 7.71 -52.49 -0.40 1.13 16 12 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 13 N -0.89 -25.55 11.32 55.43 0.63 -24.93 16 14 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 15 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 16 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 17 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 18 C 0.02 0.43 10.71 -16.73 -0.18 0.25 16 19 N -0.50 -8.77 3.18 -121.80 -0.39 -9.15 16 20 C 0.09 1.05 11.03 59.85 0.66 1.71 16 21 C 0.10 1.83 6.81 -83.98 -0.57 1.26 16 22 C -0.14 -2.25 9.60 -39.43 -0.38 -2.63 16 23 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.06 0.58 8.08 -51.93 -0.42 0.16 16 25 H 0.06 0.62 8.08 -51.93 -0.42 0.20 16 26 H 0.11 1.55 8.06 -52.48 -0.42 1.13 16 27 H 0.12 2.30 8.06 -52.49 -0.42 1.88 16 28 H 0.08 2.24 6.07 -51.93 -0.32 1.92 16 29 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16 30 H 0.02 0.57 8.02 -51.93 -0.42 0.15 16 31 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 32 H 0.16 3.03 8.06 -52.48 -0.42 2.61 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.07 0.76 8.10 -51.93 -0.42 0.34 16 36 H 0.11 1.44 8.06 -52.48 -0.42 1.02 16 LS Contribution 302.93 15.07 4.57 4.57 Total: -1.00 -30.58 302.93 -8.54 -39.12 By element: Atomic # 1 Polarization: 4.68 SS G_CDS: -5.34 Total: -0.66 kcal Atomic # 6 Polarization: -22.37 SS G_CDS: -2.99 Total: -25.37 kcal Atomic # 7 Polarization: -34.32 SS G_CDS: 0.24 Total: -34.08 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -30.58 -8.54 -39.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259748016.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.308 kcal (2) G-P(sol) polarization free energy of solvation -30.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds