Wall clock time and date at job start Mon Mar 30 2020 05:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38822 * 119.67033 * 2 1 4 4 C 1.36632 * 120.53342 * 180.02562 * 3 2 1 5 5 C 1.39629 * 119.76073 * 0.02562 * 4 3 2 6 6 C 1.46490 * 134.03408 * 179.97438 * 5 4 3 7 7 C 1.50698 * 126.50145 * 0.02562 * 6 5 4 8 8 H 1.08998 * 109.46958 * 0.02562 * 7 6 5 9 9 C 1.52993 * 109.47303 * 120.02291 * 7 6 5 10 10 C 1.50704 * 109.47056 * 240.02383 * 7 6 5 11 11 H 1.08001 * 119.99794 * 359.97438 * 10 7 6 12 12 C 1.37865 * 119.99945 * 180.02562 * 10 7 6 13 13 N 1.31519 * 120.00438 * 359.97438 * 12 10 7 14 14 Si 1.86807 * 120.00057 * 179.97438 * 12 10 7 15 15 H 1.48504 * 109.46789 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.46908 * 120.00027 * 14 12 10 17 17 H 1.48494 * 109.47504 * 239.99936 * 14 12 10 18 18 C 1.34244 * 106.99654 * 179.97438 * 6 5 4 19 19 N 1.36833 * 109.93092 * 0.02562 * 18 6 5 20 20 C 1.46499 * 125.06296 * 180.02562 * 19 18 6 21 21 C 1.37692 * 109.87406 * 0.26052 * 19 18 6 22 22 C 1.37747 * 119.66504 * 179.97438 * 2 1 3 23 23 H 1.08999 * 109.47123 * 89.99218 * 1 2 3 24 24 H 1.09000 * 109.46916 * 209.99849 * 1 2 3 25 25 H 1.09000 * 109.46872 * 329.99756 * 1 2 3 26 26 H 1.08007 * 119.73805 * 359.97438 * 3 2 1 27 27 H 1.07991 * 120.11963 * 179.97438 * 4 3 2 28 28 H 1.09003 * 109.47462 * 179.97438 * 9 7 6 29 29 H 1.09002 * 109.47205 * 299.99750 * 9 7 6 30 30 H 1.09000 * 109.47579 * 59.99694 * 9 7 6 31 31 H 0.96998 * 120.00204 * 179.97438 * 13 12 10 32 32 H 1.08003 * 125.03279 * 180.02562 * 18 6 5 33 33 H 1.09002 * 109.47391 * 90.01941 * 20 19 18 34 34 H 1.09001 * 109.46813 * 330.01997 * 20 19 18 35 35 H 1.09004 * 109.47041 * 210.02124 * 20 19 18 36 36 H 1.08006 * 120.11153 * 0.02562 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1942 1.2062 0.0000 4 6 3.5604 1.2268 -0.0005 5 6 4.2716 0.0252 -0.0016 6 6 5.6966 -0.3145 -0.0029 7 6 6.8495 0.6559 -0.0028 8 1 6.4657 1.6761 -0.0012 9 6 7.7053 0.4311 1.2453 10 6 7.6902 0.4374 -1.2344 11 1 7.4171 -0.3280 -1.9457 12 6 8.8083 1.2138 -1.4524 13 7 9.1412 2.1455 -0.5859 14 14 9.8508 0.9424 -2.9786 15 1 9.2664 -0.1570 -3.7880 16 1 9.8807 2.1887 -3.7856 17 1 11.2334 0.5803 -2.5758 18 6 5.7806 -1.6543 -0.0030 19 7 4.5259 -2.2003 -0.0024 20 6 4.2327 -3.6357 -0.0018 21 6 3.5800 -1.1997 -0.0079 22 6 2.1888 -1.1969 0.0005 23 1 -0.3633 0.0001 -1.0276 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5139 26 1 1.6445 2.1360 -0.0004 27 1 4.0881 2.1689 -0.0009 28 1 8.5395 1.1328 1.2452 29 1 7.0973 0.5893 2.1361 30 1 8.0891 -0.5890 1.2439 31 1 9.9282 2.6915 -0.7392 32 1 6.7020 -2.2178 -0.0034 33 1 4.1599 -3.9912 1.0260 34 1 5.0320 -4.1700 -0.5153 35 1 3.2880 -3.8137 -0.5157 36 1 1.6451 -2.1302 0.0005 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259748016.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:58:28 Heat of formation + Delta-G solvation = 30.926327 kcal Electronic energy + Delta-G solvation = -17042.158418 eV Core-core repulsion = 14490.557005 eV Total energy + Delta-G solvation = -2551.601413 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.09888 -38.30513 -36.49665 -34.06312 -32.57919 -31.15537 -30.60184 -27.20657 -27.06411 -26.48034 -23.60274 -22.88318 -21.52447 -19.95238 -18.18350 -17.64954 -16.96427 -16.45583 -16.08600 -15.93139 -14.94414 -14.72038 -14.61561 -14.36810 -14.33450 -13.65246 -13.31309 -13.24966 -13.13588 -12.84743 -12.80600 -12.72218 -12.47115 -12.23560 -11.99731 -11.85679 -11.67756 -11.21440 -10.97373 -10.44181 -10.16767 -8.86507 -8.26273 -8.00296 -6.19078 0.31642 0.80260 1.40630 1.42168 1.53803 1.98698 2.10392 2.46546 3.06065 3.21325 3.87671 4.02222 4.11300 4.14484 4.35108 4.50608 4.53781 4.67291 4.69936 4.75336 4.86210 4.94969 4.96658 4.99962 5.04239 5.24032 5.26604 5.31885 5.39755 5.60653 5.70990 5.80372 5.89636 5.99796 6.14412 6.20882 6.37266 6.51286 6.66253 6.89900 7.48532 8.99427 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.027230 B = 0.006468 C = 0.005910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.018124 B = 4328.021419 C = 4736.655786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.075 4.075 3 C -0.155 4.155 4 C -0.087 4.087 5 C -0.150 4.150 6 C -0.152 4.152 7 C 0.107 3.893 8 H -0.008 1.008 9 C -0.116 4.116 10 C -0.514 4.514 11 H 0.048 0.952 12 C 0.012 3.988 13 N -0.920 5.920 14 Si 0.955 3.045 15 H -0.270 1.270 16 H -0.282 1.282 17 H -0.276 1.276 18 C 0.032 3.968 19 N -0.493 5.493 20 C 0.078 3.922 21 C 0.087 3.913 22 C -0.137 4.137 23 H 0.078 0.922 24 H 0.078 0.922 25 H 0.076 0.924 26 H 0.139 0.861 27 H 0.102 0.898 28 H 0.058 0.942 29 H 0.016 0.984 30 H 0.033 0.967 31 H 0.261 0.739 32 H 0.171 0.829 33 H 0.079 0.921 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.718 -9.522 1.598 17.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.076 4.076 3 C -0.175 4.175 4 C -0.105 4.105 5 C -0.155 4.155 6 C -0.158 4.158 7 C 0.088 3.912 8 H 0.010 0.990 9 C -0.174 4.174 10 C -0.552 4.552 11 H 0.066 0.934 12 C -0.186 4.186 13 N -0.560 5.560 14 Si 0.781 3.219 15 H -0.194 1.194 16 H -0.208 1.208 17 H -0.202 1.202 18 C -0.091 4.091 19 N -0.177 5.177 20 C -0.063 4.063 21 C -0.021 4.021 22 C -0.158 4.158 23 H 0.097 0.903 24 H 0.097 0.903 25 H 0.095 0.905 26 H 0.157 0.843 27 H 0.121 0.879 28 H 0.077 0.923 29 H 0.035 0.965 30 H 0.052 0.948 31 H 0.070 0.930 32 H 0.188 0.812 33 H 0.097 0.903 34 H 0.111 0.889 35 H 0.112 0.888 36 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -14.608 -9.785 1.631 17.658 hybrid contribution 1.277 0.387 -0.709 1.510 sum -13.332 -9.398 0.922 16.337 Atomic orbital electron populations 1.20764 0.88209 1.03747 1.03087 1.19922 0.97506 0.91478 0.98718 1.20708 0.92659 0.98852 1.05241 1.20420 0.94881 0.96014 0.99218 1.19619 0.93481 0.93985 1.08434 1.20954 0.92721 0.94539 1.07632 1.17018 0.89065 0.91073 0.94031 0.98999 1.21585 1.00117 0.99967 0.95699 1.21447 1.09387 1.17971 1.06418 0.93417 1.25739 0.98705 0.94897 0.99302 1.70035 1.26888 1.22186 1.36861 0.85549 0.78660 0.77923 0.79769 1.19426 1.20845 1.20183 1.21538 0.87746 0.93361 1.06477 1.43922 1.03683 1.06489 1.63617 1.22139 1.04049 0.76212 1.03859 1.18533 0.91716 0.87403 1.04406 1.20084 0.88729 0.99319 1.07666 0.90305 0.90312 0.90543 0.84284 0.87944 0.92347 0.96473 0.94811 0.93007 0.81197 0.90285 0.88926 0.88794 0.83873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.77 9.99 71.24 0.71 -1.06 16 2 C -0.07 -2.04 5.88 -19.84 -0.12 -2.16 16 3 C -0.16 -4.91 9.61 22.03 0.21 -4.70 16 4 C -0.09 -3.50 10.05 22.23 0.22 -3.28 16 5 C -0.15 -6.62 6.35 -20.20 -0.13 -6.75 16 6 C -0.15 -7.28 4.99 -18.63 -0.09 -7.37 16 7 C 0.11 5.87 2.69 -12.29 -0.03 5.84 16 8 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 9 C -0.12 -5.99 8.85 71.98 0.64 -5.35 16 10 C -0.51 -29.60 8.41 25.60 0.22 -29.39 16 11 H 0.05 2.74 7.71 -2.91 -0.02 2.72 16 12 C 0.01 0.66 5.30 84.65 0.45 1.10 16 13 N -0.92 -54.67 11.32 21.44 0.24 -54.42 16 14 Si 0.96 44.78 29.54 68.60 2.03 46.81 16 15 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 16 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 17 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 18 C 0.03 1.30 10.71 83.00 0.89 2.19 16 19 N -0.49 -16.65 3.18 -539.25 -1.71 -18.37 16 20 C 0.08 1.63 11.03 127.77 1.41 3.04 16 21 C 0.09 3.17 6.81 39.03 0.27 3.44 16 22 C -0.14 -3.99 9.60 22.37 0.21 -3.77 16 23 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 24 H 0.08 1.11 8.08 -2.39 -0.02 1.09 16 25 H 0.08 1.16 8.08 -2.39 -0.02 1.15 16 26 H 0.14 3.56 8.06 -2.91 -0.02 3.53 16 27 H 0.10 4.31 8.06 -2.92 -0.02 4.29 16 28 H 0.06 3.28 6.07 -2.39 -0.01 3.27 16 29 H 0.02 0.79 8.14 -2.39 -0.02 0.78 16 30 H 0.03 1.61 8.02 -2.39 -0.02 1.59 16 31 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 32 H 0.17 6.38 8.06 -2.91 -0.02 6.36 16 33 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.09 1.57 8.10 -2.38 -0.02 1.56 16 36 H 0.14 3.10 8.06 -2.91 -0.02 3.07 16 Total: -1.00 -69.44 302.93 6.46 -62.99 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: 1.05 Total: 11.22 kcal Atomic # 6 Polarization: -53.08 SS G_CDS: 4.86 Total: -48.22 kcal Atomic # 7 Polarization: -71.32 SS G_CDS: -1.47 Total: -72.79 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -69.44 6.46 -62.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259748016.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.915 kcal (2) G-P(sol) polarization free energy of solvation -69.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds