Wall clock time and date at job start Mon Mar 30 2020 06:04:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.36658 * 120.12062 * 2 1 4 4 C 1.38782 * 120.52717 * 180.02562 * 3 2 1 5 5 C 1.37794 * 120.66935 * 359.97438 * 4 3 2 6 6 C 1.50694 * 120.11182 * 180.02562 * 5 4 3 7 7 C 1.39089 * 119.77444 * 0.02562 * 5 4 3 8 8 C 1.39591 * 120.11498 * 179.97438 * 2 1 3 9 9 C 1.46496 * 134.03058 * 359.97438 * 8 2 1 10 10 C 1.34235 * 106.99872 * 179.97438 * 9 8 2 11 11 C 1.50693 * 125.03341 * 179.97438 * 10 9 8 12 12 C 1.50704 * 109.47193 * 85.02500 * 11 10 9 13 13 H 1.07991 * 119.99696 * 0.02562 * 12 11 10 14 14 C 1.37880 * 120.00024 * 180.02562 * 12 11 10 15 15 N 1.31510 * 119.99857 * 0.02562 * 14 12 11 16 16 Si 1.86791 * 119.99819 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47144 * 90.00263 * 16 14 12 18 18 H 1.48498 * 109.47292 * 210.00008 * 16 14 12 19 19 H 1.48497 * 109.47517 * 330.00187 * 16 14 12 20 20 N 1.36834 * 109.93678 * 359.97438 * 10 9 8 21 21 C 1.46504 * 125.06443 * 179.97438 * 20 10 9 22 22 H 1.08997 * 109.47043 * 270.02233 * 1 2 3 23 23 H 1.09000 * 109.46839 * 30.01730 * 1 2 3 24 24 H 1.08995 * 109.47226 * 150.01951 * 1 2 3 25 25 H 1.08005 * 119.73545 * 359.97438 * 3 2 1 26 26 H 1.07998 * 119.67125 * 180.02562 * 4 3 2 27 27 H 1.09000 * 109.47094 * 269.97708 * 6 5 4 28 28 H 1.08995 * 109.47660 * 29.97679 * 6 5 4 29 29 H 1.09002 * 109.46927 * 149.98181 * 6 5 4 30 30 H 1.07998 * 126.49904 * 359.72772 * 9 8 2 31 31 H 1.09002 * 109.47211 * 205.02852 * 11 10 9 32 32 H 1.09001 * 109.47190 * 325.02401 * 11 10 9 33 33 H 0.96998 * 119.99984 * 180.02562 * 15 14 12 34 34 H 1.08993 * 109.47021 * 270.04400 * 21 20 10 35 35 H 1.08997 * 109.46710 * 30.04173 * 21 20 10 36 36 H 1.08998 * 109.46862 * 150.03870 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1928 1.1821 0.0000 4 6 3.5806 1.1919 -0.0005 5 6 4.2919 0.0117 -0.0005 6 6 5.7986 0.0371 -0.0005 7 6 3.6144 -1.2030 -0.0006 8 6 2.2074 -1.2075 0.0005 9 6 1.8072 -2.6167 0.0016 10 6 2.9349 -3.3449 0.0011 11 6 2.9922 -4.8508 0.0025 12 6 2.8867 -5.3588 -1.4125 13 1 2.7884 -4.6609 -2.2307 14 6 2.9156 -6.7145 -1.6622 15 7 3.0348 -7.5642 -0.6656 16 14 2.7841 -7.3441 -3.4159 17 1 4.1429 -7.4585 -4.0039 18 1 2.1311 -8.6778 -3.4153 19 1 1.9738 -6.3966 -4.2226 20 7 4.0246 -2.5174 -0.0008 21 6 5.4201 -2.9635 -0.0013 22 1 -0.3633 0.0004 1.0276 23 1 -0.3633 0.8898 -0.5141 24 1 -0.3633 -0.8901 -0.5135 25 1 1.6505 2.1160 -0.0004 26 1 4.1086 2.1340 -0.0001 27 1 6.1619 0.0428 -1.0282 28 1 6.1470 0.9332 0.5129 29 1 6.1768 -0.8465 0.5136 30 1 0.7966 -2.9975 0.0064 31 1 3.9370 -5.1780 0.4365 32 1 2.1652 -5.2453 0.5928 33 1 3.0555 -8.5179 -0.8413 34 1 5.7667 -3.0735 1.0261 35 1 5.4949 -3.9221 -0.5146 36 1 6.0368 -2.2267 -0.5160 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259755477.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:13 Heat of formation + Delta-G solvation = 23.897987 kcal Electronic energy + Delta-G solvation = -17090.599175 eV Core-core repulsion = 14538.692990 eV Total energy + Delta-G solvation = -2551.906185 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.27518 -38.42546 -35.51032 -35.06720 -32.54253 -31.95488 -30.24204 -28.29083 -27.15311 -25.41949 -25.16245 -22.63995 -21.29699 -20.04417 -18.58951 -17.36980 -17.08876 -16.42986 -16.25514 -15.79845 -15.11163 -14.55357 -14.47761 -14.37403 -14.06470 -14.00048 -13.83911 -13.42428 -13.35823 -13.14590 -13.02002 -12.67502 -12.59310 -12.42046 -11.95766 -11.85672 -11.81007 -11.55675 -11.37076 -10.66129 -10.11131 -8.89097 -8.34097 -8.17057 -6.39543 0.29727 0.82743 1.37057 1.38527 1.50019 1.90180 2.06331 2.38930 3.01461 3.05501 3.84401 3.96809 4.07866 4.08541 4.25515 4.37511 4.41141 4.46261 4.62032 4.74086 4.80561 4.80959 4.85978 4.90822 4.94227 5.06063 5.14813 5.22262 5.23984 5.33554 5.44253 5.65701 5.72210 5.83173 6.00724 6.07055 6.19434 6.45462 6.59750 6.70157 7.29615 8.83139 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.026884 B = 0.006494 C = 0.005759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.252386 B = 4310.602915 C = 4860.701032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.067 4.067 3 C -0.151 4.151 4 C -0.108 4.108 5 C -0.113 4.113 6 C -0.113 4.113 7 C 0.071 3.929 8 C -0.126 4.126 9 C -0.245 4.245 10 C 0.109 3.891 11 C 0.084 3.916 12 C -0.530 4.530 13 H 0.048 0.952 14 C 0.013 3.987 15 N -0.924 5.924 16 Si 0.964 3.036 17 H -0.269 1.269 18 H -0.276 1.276 19 H -0.271 1.271 20 N -0.486 5.486 21 C 0.071 3.929 22 H 0.074 0.926 23 H 0.086 0.914 24 H 0.051 0.949 25 H 0.148 0.852 26 H 0.154 0.846 27 H 0.073 0.927 28 H 0.089 0.911 29 H 0.063 0.937 30 H 0.133 0.867 31 H 0.014 0.986 32 H 0.020 0.980 33 H 0.268 0.732 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.845 16.287 1.237 16.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.067 4.067 3 C -0.170 4.170 4 C -0.127 4.127 5 C -0.116 4.116 6 C -0.170 4.170 7 C -0.034 4.034 8 C -0.131 4.131 9 C -0.269 4.269 10 C 0.001 3.999 11 C 0.046 3.954 12 C -0.568 4.568 13 H 0.066 0.934 14 C -0.186 4.186 15 N -0.564 5.564 16 Si 0.788 3.212 17 H -0.195 1.195 18 H -0.202 1.202 19 H -0.196 1.196 20 N -0.169 5.169 21 C -0.070 4.070 22 H 0.093 0.907 23 H 0.104 0.896 24 H 0.070 0.930 25 H 0.166 0.834 26 H 0.171 0.829 27 H 0.091 0.909 28 H 0.108 0.892 29 H 0.082 0.918 30 H 0.151 0.849 31 H 0.032 0.968 32 H 0.038 0.962 33 H 0.077 0.923 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 3.192 15.954 1.285 16.321 hybrid contribution -0.210 -1.173 -0.661 1.362 sum 2.983 14.781 0.624 15.092 Atomic orbital electron populations 1.20715 0.90137 1.02825 1.02570 1.19382 0.96816 0.90941 0.99584 1.20770 0.94432 0.97266 1.04486 1.20983 0.94006 0.96896 1.00811 1.19223 0.96981 0.89430 1.05933 1.20927 0.89658 1.03692 1.02699 1.18534 0.93814 0.85067 1.06021 1.19362 0.92732 0.93438 1.07572 1.21379 0.97314 0.91175 1.17037 1.21018 0.86246 0.93870 0.98769 1.17735 0.96923 0.83650 0.97069 1.21208 1.51308 0.91946 0.92309 0.93356 1.25817 0.94303 0.96824 1.01640 1.70047 1.50385 1.02908 1.33023 0.85463 0.78706 0.77713 0.79306 1.19461 1.20155 1.19555 1.43922 1.06515 1.03646 1.62842 1.22230 0.79248 1.02124 1.03359 0.90704 0.89557 0.92953 0.83445 0.82852 0.90881 0.89175 0.91831 0.84907 0.96768 0.96203 0.92291 0.90597 0.91048 0.87580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.79 9.95 71.24 0.71 -2.08 16 2 C -0.07 -2.16 5.87 -19.91 -0.12 -2.28 16 3 C -0.15 -4.00 9.62 22.03 0.21 -3.79 16 4 C -0.11 -2.76 9.67 22.29 0.22 -2.55 16 5 C -0.11 -3.40 5.89 -19.77 -0.12 -3.51 16 6 C -0.11 -2.52 8.80 71.23 0.63 -1.89 16 7 C 0.07 2.74 6.74 39.03 0.26 3.00 16 8 C -0.13 -5.08 6.14 -20.20 -0.12 -5.20 16 9 C -0.24 -11.13 10.65 23.51 0.25 -10.88 16 10 C 0.11 5.19 6.02 40.86 0.25 5.44 16 11 C 0.08 4.52 4.97 29.10 0.14 4.66 16 12 C -0.53 -30.29 9.09 25.60 0.23 -30.06 16 13 H 0.05 2.80 7.74 -2.92 -0.02 2.78 16 14 C 0.01 0.75 5.46 84.66 0.46 1.21 16 15 N -0.92 -54.40 13.29 21.45 0.28 -54.12 16 16 Si 0.96 44.01 29.54 68.60 2.03 46.04 16 17 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 18 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 19 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 20 N -0.49 -20.09 3.18 -524.70 -1.67 -21.75 16 21 C 0.07 2.38 9.30 127.77 1.19 3.57 16 22 H 0.07 1.79 8.14 -2.39 -0.02 1.78 16 23 H 0.09 1.77 8.08 -2.39 -0.02 1.75 16 24 H 0.05 1.51 7.90 -2.39 -0.02 1.49 16 25 H 0.15 2.86 8.06 -2.91 -0.02 2.84 16 26 H 0.15 2.73 8.06 -2.91 -0.02 2.71 16 27 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.09 1.51 8.09 -2.39 -0.02 1.49 16 29 H 0.06 1.42 5.51 -2.39 -0.01 1.41 16 30 H 0.13 5.88 8.06 -2.91 -0.02 5.86 16 31 H 0.01 0.78 7.34 -2.39 -0.02 0.76 16 32 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.27 14.76 8.31 -92.71 -0.77 13.99 16 34 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 35 H 0.07 2.68 7.40 -2.39 -0.02 2.66 16 36 H 0.11 2.85 5.68 -2.39 -0.01 2.84 16 Total: -1.00 -66.99 298.29 5.90 -61.09 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: 1.06 Total: 13.10 kcal Atomic # 6 Polarization: -48.55 SS G_CDS: 4.19 Total: -44.36 kcal Atomic # 7 Polarization: -74.49 SS G_CDS: -1.38 Total: -75.87 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Total: -66.99 5.90 -61.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259755477.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.989 kcal (2) G-P(sol) polarization free energy of solvation -66.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.091 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds