Wall clock time and date at job start Mon Mar 30 2020 05:48:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.37795 * 119.66560 * 2 1 4 4 C 1.39087 * 119.77354 * 179.97438 * 3 2 1 5 5 N 1.37689 * 133.50912 * 180.02562 * 4 3 2 6 6 H 0.96997 * 125.06433 * 0.02562 * 5 4 3 7 7 C 1.36834 * 109.87344 * 180.02562 * 5 4 3 8 8 C 1.34234 * 109.93902 * 359.97438 * 7 5 4 9 9 C 1.40700 * 119.33821 * 0.02562 * 4 3 2 10 10 C 1.39592 * 119.92811 * 359.97438 * 9 4 3 11 11 C 1.50696 * 120.11945 * 179.97438 * 10 9 4 12 12 C 1.53000 * 109.47239 * 270.02033 * 11 10 9 13 13 C 1.50701 * 109.47617 * 179.97438 * 12 11 10 14 14 H 1.07999 * 119.99686 * 0.02562 * 13 12 11 15 15 C 1.37868 * 120.00250 * 180.02562 * 13 12 11 16 16 N 1.31520 * 120.00223 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00009 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47099 * 59.99780 * 17 15 13 19 19 H 1.48505 * 109.47333 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.47126 * 299.99544 * 17 15 13 21 21 C 1.36665 * 119.76657 * 0.02562 * 10 9 4 22 22 C 1.50694 * 119.73925 * 179.72339 * 21 10 9 23 23 H 1.08997 * 109.47405 * 269.99849 * 1 2 3 24 24 H 1.09004 * 109.47395 * 29.99852 * 1 2 3 25 25 H 1.08996 * 109.47533 * 149.99711 * 1 2 3 26 26 H 1.07995 * 120.11247 * 0.02562 * 3 2 1 27 27 H 1.07997 * 125.03342 * 179.97438 * 7 5 4 28 28 H 1.08001 * 126.50362 * 180.02562 * 8 7 5 29 29 H 1.09001 * 109.46994 * 30.02379 * 11 10 9 30 30 H 1.09002 * 109.47713 * 150.02500 * 11 10 9 31 31 H 1.09000 * 109.47271 * 300.00624 * 12 11 10 32 32 H 1.09012 * 109.46818 * 59.99968 * 12 11 10 33 33 H 0.96999 * 119.99992 * 180.02562 * 16 15 13 34 34 H 1.09002 * 109.47308 * 89.99638 * 22 21 10 35 35 H 1.08997 * 109.47105 * 209.99612 * 22 21 10 36 36 H 1.08999 * 109.46903 * 329.99652 * 22 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1889 1.1973 0.0000 4 6 3.5798 1.2000 0.0005 5 7 4.5259 2.2004 0.0011 6 1 4.3319 3.1507 0.0016 7 6 5.7805 1.6541 0.0009 8 6 5.6964 0.3144 0.0008 9 6 4.2715 -0.0253 0.0005 10 6 3.5604 -1.2265 0.0005 11 6 4.2968 -2.5412 -0.0001 12 6 4.5460 -2.9856 -1.4428 13 6 5.2830 -4.3001 -1.4434 14 1 5.5469 -4.7717 -0.5084 15 6 5.6203 -4.9007 -2.6377 16 7 5.2985 -4.3268 -3.7765 17 14 6.5333 -6.5304 -2.6385 18 1 5.7171 -7.5553 -1.9394 19 1 6.7752 -6.9617 -4.0388 20 1 7.8328 -6.3702 -1.9379 21 6 2.1939 -1.2060 0.0000 22 6 1.4268 -2.5031 -0.0063 23 1 -0.3634 0.0000 1.0276 24 1 -0.3634 0.8900 -0.5138 25 1 -0.3634 -0.8899 -0.5138 26 1 1.6453 2.1305 0.0004 27 1 6.7019 2.2174 0.0009 28 1 6.5226 -0.3811 0.0010 29 1 5.2509 -2.4235 0.5138 30 1 3.6980 -3.2935 0.5134 31 1 3.5919 -3.1033 -1.9566 32 1 5.1449 -2.2334 -1.9563 33 1 5.5355 -4.7495 -4.6167 34 1 1.2414 -2.8206 1.0198 35 1 0.4761 -2.3604 -0.5199 36 1 2.0082 -3.2664 -0.5235 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259774748.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:52 Heat of formation + Delta-G solvation = 32.237167 kcal Electronic energy + Delta-G solvation = -17002.090499 eV Core-core repulsion = 14450.545928 eV Total energy + Delta-G solvation = -2551.544571 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.87241 -37.68956 -34.33955 -32.45325 -31.26854 -30.10843 -29.33427 -26.42709 -25.56885 -24.66072 -21.70737 -20.36390 -20.15092 -19.47209 -17.35829 -16.21466 -15.21774 -15.02107 -14.48079 -14.23160 -14.01391 -13.40351 -13.00795 -12.88156 -12.63323 -12.38199 -12.11530 -11.99240 -11.91911 -11.28743 -11.22882 -10.88183 -10.80564 -10.74947 -10.37802 -10.13460 -9.68306 -9.53065 -9.01557 -8.86844 -8.26795 -7.57383 -7.08097 -5.92063 -3.94842 1.58393 2.08894 3.11694 3.37681 3.41903 3.44392 3.45136 4.31627 4.52341 5.09905 5.17352 5.29042 5.42997 5.45785 5.55605 5.71814 5.77666 5.80045 5.94482 6.10428 6.19516 6.21737 6.25607 6.34304 6.48151 6.59633 6.74076 6.82065 6.96083 7.06785 7.20860 7.24722 7.39604 7.66736 7.79096 7.86465 7.95626 8.10341 8.49797 9.12460 9.68489 11.18759 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.023803 B = 0.006549 C = 0.005489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.018820 B = 4274.230667 C = 5099.427192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.059 4.059 3 C -0.154 4.154 4 C 0.095 3.905 5 N -0.603 5.603 6 H 0.408 0.592 7 C 0.027 3.973 8 C -0.182 4.182 9 C -0.108 4.108 10 C -0.003 4.003 11 C -0.079 4.079 12 C 0.034 3.966 13 C -0.520 4.520 14 H 0.054 0.946 15 C 0.058 3.942 16 N -0.894 5.894 17 Si 0.890 3.110 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.277 1.277 21 C -0.121 4.121 22 C -0.115 4.115 23 H 0.065 0.935 24 H 0.058 0.942 25 H 0.071 0.929 26 H 0.110 0.890 27 H 0.164 0.836 28 H 0.146 0.854 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.017 0.983 32 H 0.017 0.983 33 H 0.260 0.740 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.525 12.090 8.207 15.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.060 4.060 3 C -0.175 4.175 4 C -0.012 4.012 5 N -0.207 5.207 6 H 0.244 0.756 7 C -0.098 4.098 8 C -0.207 4.207 9 C -0.113 4.113 10 C -0.003 4.003 11 C -0.117 4.117 12 C -0.003 4.003 13 C -0.558 4.558 14 H 0.073 0.927 15 C -0.143 4.143 16 N -0.534 5.534 17 Si 0.718 3.282 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.203 1.203 21 C -0.122 4.122 22 C -0.171 4.171 23 H 0.084 0.916 24 H 0.077 0.923 25 H 0.090 0.910 26 H 0.128 0.872 27 H 0.181 0.819 28 H 0.164 0.836 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.036 0.964 32 H 0.036 0.964 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -5.493 12.182 8.007 15.579 hybrid contribution 0.596 -0.269 -0.205 0.685 sum -4.898 11.912 7.802 15.059 Atomic orbital electron populations 1.20804 0.91695 1.02514 1.01784 1.19323 0.95177 0.91885 0.99626 1.19589 0.89752 0.97511 1.10686 1.18192 0.90637 0.88085 1.04250 1.41655 1.04765 1.07461 1.66824 0.75606 1.21659 0.87392 0.94265 1.06468 1.21790 0.95151 0.94143 1.09651 1.19043 0.93137 0.91832 1.07267 1.19387 0.92508 0.94621 0.93822 1.20809 0.98062 0.91057 1.01722 1.19018 0.96897 0.95651 0.88735 1.21238 1.36542 1.05831 0.92205 0.92727 1.25008 0.96105 0.97544 0.95686 1.69973 1.47130 1.39052 0.97217 0.86693 0.80377 0.84264 0.76858 1.20266 1.21372 1.20281 1.19059 0.92971 0.94548 1.05658 1.20854 0.99549 0.95256 1.01461 0.91641 0.92262 0.90986 0.87166 0.81864 0.83624 0.92393 0.92071 0.96419 0.96427 0.93038 0.92266 0.92122 0.90083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.36 9.58 36.00 0.34 -1.02 16 2 C -0.06 -0.95 5.88 -104.58 -0.61 -1.56 16 3 C -0.15 -2.40 9.71 -39.43 -0.38 -2.79 16 4 C 0.09 1.60 7.28 -83.99 -0.61 0.99 16 5 N -0.60 -8.12 6.07 -10.65 -0.06 -8.19 16 6 H 0.41 3.94 8.96 -40.82 -0.37 3.57 16 7 C 0.03 0.37 11.81 -16.73 -0.20 0.17 16 8 C -0.18 -3.17 10.78 -37.67 -0.41 -3.57 16 9 C -0.11 -2.10 6.14 -105.14 -0.65 -2.75 16 10 C 0.00 -0.06 5.13 -104.69 -0.54 -0.59 16 11 C -0.08 -1.75 4.52 -27.88 -0.13 -1.87 16 12 C 0.03 0.91 4.80 -27.88 -0.13 0.77 16 13 C -0.52 -14.91 9.11 -34.44 -0.31 -15.23 16 14 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 15 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 16 N -0.89 -27.39 13.29 55.43 0.74 -26.65 16 17 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 21 C -0.12 -2.22 5.85 -104.99 -0.61 -2.84 16 22 C -0.11 -1.90 8.74 36.00 0.31 -1.59 16 23 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 24 H 0.06 0.63 8.08 -51.93 -0.42 0.21 16 25 H 0.07 0.86 5.89 -51.93 -0.31 0.55 16 26 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 27 H 0.16 1.58 8.06 -52.49 -0.42 1.16 16 28 H 0.15 2.49 8.06 -52.49 -0.42 2.07 16 29 H 0.06 1.26 7.90 -51.93 -0.41 0.85 16 30 H 0.06 1.29 6.67 -51.93 -0.35 0.94 16 31 H 0.02 0.50 7.35 -51.93 -0.38 0.12 16 32 H 0.02 0.51 8.14 -51.92 -0.42 0.08 16 33 H 0.26 7.52 8.31 -40.82 -0.34 7.19 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.06 0.87 5.89 -51.93 -0.31 0.57 16 36 H 0.08 1.54 5.75 -51.93 -0.30 1.24 16 LS Contribution 296.15 15.07 4.46 4.46 Total: -1.00 -32.80 296.15 -8.82 -41.62 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -4.91 Total: 2.18 kcal Atomic # 6 Polarization: -26.27 SS G_CDS: -4.02 Total: -30.29 kcal Atomic # 7 Polarization: -35.51 SS G_CDS: 0.67 Total: -34.84 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -32.80 -8.82 -41.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259774748.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.855 kcal (2) G-P(sol) polarization free energy of solvation -32.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds