Wall clock time and date at job start Mon Mar 30 2020 05:48:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.37795 * 119.66560 * 2 1 4 4 C 1.39087 * 119.77354 * 179.97438 * 3 2 1 5 5 N 1.37689 * 133.50912 * 180.02562 * 4 3 2 6 6 H 0.96997 * 125.06433 * 0.02562 * 5 4 3 7 7 C 1.36834 * 109.87344 * 180.02562 * 5 4 3 8 8 C 1.34234 * 109.93902 * 359.97438 * 7 5 4 9 9 C 1.40700 * 119.33821 * 0.02562 * 4 3 2 10 10 C 1.39592 * 119.92811 * 359.97438 * 9 4 3 11 11 C 1.50696 * 120.11945 * 179.97438 * 10 9 4 12 12 C 1.53000 * 109.47239 * 270.02033 * 11 10 9 13 13 C 1.50701 * 109.47617 * 179.97438 * 12 11 10 14 14 H 1.07999 * 119.99686 * 0.02562 * 13 12 11 15 15 C 1.37868 * 120.00250 * 180.02562 * 13 12 11 16 16 N 1.31520 * 120.00223 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00009 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47099 * 59.99780 * 17 15 13 19 19 H 1.48505 * 109.47333 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.47126 * 299.99544 * 17 15 13 21 21 C 1.36665 * 119.76657 * 0.02562 * 10 9 4 22 22 C 1.50694 * 119.73925 * 179.72339 * 21 10 9 23 23 H 1.08997 * 109.47405 * 269.99849 * 1 2 3 24 24 H 1.09004 * 109.47395 * 29.99852 * 1 2 3 25 25 H 1.08996 * 109.47533 * 149.99711 * 1 2 3 26 26 H 1.07995 * 120.11247 * 0.02562 * 3 2 1 27 27 H 1.07997 * 125.03342 * 179.97438 * 7 5 4 28 28 H 1.08001 * 126.50362 * 180.02562 * 8 7 5 29 29 H 1.09001 * 109.46994 * 30.02379 * 11 10 9 30 30 H 1.09002 * 109.47713 * 150.02500 * 11 10 9 31 31 H 1.09000 * 109.47271 * 300.00624 * 12 11 10 32 32 H 1.09012 * 109.46818 * 59.99968 * 12 11 10 33 33 H 0.96999 * 119.99992 * 180.02562 * 16 15 13 34 34 H 1.09002 * 109.47308 * 89.99638 * 22 21 10 35 35 H 1.08997 * 109.47105 * 209.99612 * 22 21 10 36 36 H 1.08999 * 109.46903 * 329.99652 * 22 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1889 1.1973 0.0000 4 6 3.5798 1.2000 0.0005 5 7 4.5259 2.2004 0.0011 6 1 4.3319 3.1507 0.0016 7 6 5.7805 1.6541 0.0009 8 6 5.6964 0.3144 0.0008 9 6 4.2715 -0.0253 0.0005 10 6 3.5604 -1.2265 0.0005 11 6 4.2968 -2.5412 -0.0001 12 6 4.5460 -2.9856 -1.4428 13 6 5.2830 -4.3001 -1.4434 14 1 5.5469 -4.7717 -0.5084 15 6 5.6203 -4.9007 -2.6377 16 7 5.2985 -4.3268 -3.7765 17 14 6.5333 -6.5304 -2.6385 18 1 5.7171 -7.5553 -1.9394 19 1 6.7752 -6.9617 -4.0388 20 1 7.8328 -6.3702 -1.9379 21 6 2.1939 -1.2060 0.0000 22 6 1.4268 -2.5031 -0.0063 23 1 -0.3634 0.0000 1.0276 24 1 -0.3634 0.8900 -0.5138 25 1 -0.3634 -0.8899 -0.5138 26 1 1.6453 2.1305 0.0004 27 1 6.7019 2.2174 0.0009 28 1 6.5226 -0.3811 0.0010 29 1 5.2509 -2.4235 0.5138 30 1 3.6980 -3.2935 0.5134 31 1 3.5919 -3.1033 -1.9566 32 1 5.1449 -2.2334 -1.9563 33 1 5.5355 -4.7495 -4.6167 34 1 1.2414 -2.8206 1.0198 35 1 0.4761 -2.3604 -0.5199 36 1 2.0082 -3.2664 -0.5235 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259774748.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:51 Heat of formation + Delta-G solvation = 13.383446 kcal Electronic energy + Delta-G solvation = -17002.908058 eV Core-core repulsion = 14450.545928 eV Total energy + Delta-G solvation = -2552.362129 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.11628 -38.98418 -36.10994 -34.37035 -32.52060 -31.62922 -30.80565 -27.96768 -26.73606 -26.45298 -23.54328 -21.71436 -21.46275 -20.86108 -18.74119 -18.31502 -16.57663 -16.50541 -16.31916 -15.53492 -15.20830 -14.74352 -14.54621 -14.34581 -14.09686 -14.03135 -13.48939 -13.30881 -13.11833 -13.09318 -12.88555 -12.63172 -12.55606 -12.07008 -11.96232 -11.63900 -11.61944 -11.33666 -11.01749 -10.54105 -10.31258 -8.83598 -8.39389 -8.16279 -6.30061 0.29549 0.75565 1.39804 1.43838 1.51684 1.89269 2.35455 2.42110 2.96982 3.14498 3.87689 4.05233 4.09426 4.30788 4.36112 4.47502 4.56740 4.64287 4.80781 4.81533 4.85381 4.93377 4.97234 5.01548 5.07384 5.16269 5.21695 5.34185 5.42943 5.51802 5.63197 5.74381 5.82240 5.89988 5.94074 6.07302 6.25303 6.37102 6.85786 6.86781 7.38904 8.94043 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.023803 B = 0.006549 C = 0.005489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.018820 B = 4274.230667 C = 5099.427192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.071 4.071 3 C -0.144 4.144 4 C 0.080 3.920 5 N -0.585 5.585 6 H 0.431 0.569 7 C 0.066 3.934 8 C -0.241 4.241 9 C -0.141 4.141 10 C -0.048 4.048 11 C -0.060 4.060 12 C 0.050 3.950 13 C -0.543 4.543 14 H 0.060 0.940 15 C 0.001 3.999 16 N -0.934 5.934 17 Si 0.967 3.033 18 H -0.265 1.265 19 H -0.282 1.282 20 H -0.266 1.266 21 C -0.131 4.131 22 C -0.111 4.111 23 H 0.083 0.917 24 H 0.079 0.921 25 H 0.072 0.928 26 H 0.148 0.852 27 H 0.212 0.788 28 H 0.131 0.869 29 H 0.050 0.950 30 H 0.063 0.937 31 H -0.010 1.010 32 H -0.020 1.020 33 H 0.263 0.737 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.168 13.631 9.065 17.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.073 4.073 3 C -0.164 4.164 4 C -0.027 4.027 5 N -0.191 5.191 6 H 0.271 0.729 7 C -0.060 4.060 8 C -0.266 4.266 9 C -0.146 4.146 10 C -0.048 4.048 11 C -0.097 4.097 12 C 0.013 3.987 13 C -0.581 4.581 14 H 0.079 0.921 15 C -0.197 4.197 16 N -0.574 5.574 17 Si 0.790 3.210 18 H -0.190 1.190 19 H -0.207 1.207 20 H -0.191 1.191 21 C -0.133 4.133 22 C -0.167 4.167 23 H 0.102 0.898 24 H 0.098 0.902 25 H 0.090 0.910 26 H 0.166 0.834 27 H 0.229 0.771 28 H 0.149 0.851 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.008 0.992 32 H -0.001 1.001 33 H 0.072 0.928 34 H 0.095 0.905 35 H 0.101 0.899 36 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -6.153 13.755 8.884 17.492 hybrid contribution 0.789 -0.624 -0.476 1.113 sum -5.364 13.131 8.408 16.489 Atomic orbital electron populations 1.20850 0.88679 1.03565 1.03258 1.19745 0.97356 0.91046 0.99126 1.20051 0.89372 0.98868 1.08112 1.18398 0.91608 0.87989 1.04739 1.41667 1.03977 1.08199 1.65216 0.72920 1.22255 0.88876 0.93168 1.01718 1.21882 0.94385 0.96078 1.14232 1.19413 0.94532 0.92750 1.07861 1.19330 0.93662 0.93934 0.97908 1.20455 0.98159 0.92857 0.98245 1.18757 0.94425 0.94282 0.91274 1.21660 1.36975 1.06718 0.92775 0.92134 1.26000 0.96851 1.01790 0.95055 1.70126 1.48259 1.41024 0.97985 0.85486 0.79184 0.79037 0.77247 1.18952 1.20729 1.19135 1.19375 0.92503 0.96291 1.05093 1.20832 0.99753 0.93789 1.02363 0.89798 0.90199 0.90964 0.83448 0.77119 0.85104 0.93166 0.91825 0.99203 1.00149 0.92801 0.90501 0.89894 0.93532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.29 9.58 71.23 0.68 -1.61 16 2 C -0.07 -2.18 5.88 -19.84 -0.12 -2.30 16 3 C -0.14 -4.12 9.71 22.37 0.22 -3.90 16 4 C 0.08 2.59 7.28 39.03 0.28 2.87 16 5 N -0.59 -14.16 6.07 -187.62 -1.14 -15.30 16 6 H 0.43 6.57 8.96 -92.71 -0.83 5.74 16 7 C 0.07 1.68 11.81 83.00 0.98 2.66 16 8 C -0.24 -8.65 10.78 23.51 0.25 -8.40 16 9 C -0.14 -5.65 6.14 -20.20 -0.12 -5.77 16 10 C -0.05 -2.05 5.13 -19.91 -0.10 -2.15 16 11 C -0.06 -2.84 4.52 29.85 0.13 -2.71 16 12 C 0.05 2.86 4.80 29.85 0.14 3.00 16 13 C -0.54 -32.58 9.11 25.60 0.23 -32.35 16 14 H 0.06 3.46 7.74 -2.91 -0.02 3.44 16 15 C 0.00 0.04 5.46 84.65 0.46 0.50 16 16 N -0.93 -59.24 13.29 21.44 0.28 -58.96 16 17 Si 0.97 45.62 29.54 68.60 2.03 47.65 16 18 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 19 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 20 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 21 C -0.13 -4.91 5.85 -20.10 -0.12 -5.03 16 22 C -0.11 -3.75 8.74 71.23 0.62 -3.13 16 23 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 24 H 0.08 1.39 8.08 -2.39 -0.02 1.37 16 25 H 0.07 1.54 5.89 -2.39 -0.01 1.52 16 26 H 0.15 3.06 8.06 -2.91 -0.02 3.04 16 27 H 0.21 3.23 8.06 -2.91 -0.02 3.21 16 28 H 0.13 4.88 8.06 -2.91 -0.02 4.86 16 29 H 0.05 2.37 7.90 -2.39 -0.02 2.35 16 30 H 0.06 2.88 6.67 -2.39 -0.02 2.86 16 31 H -0.01 -0.64 7.35 -2.39 -0.02 -0.66 16 32 H -0.02 -1.27 8.14 -2.38 -0.02 -1.29 16 33 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 34 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 35 H 0.08 2.36 5.89 -2.39 -0.01 2.34 16 36 H 0.05 1.87 5.75 -2.39 -0.01 1.86 16 Total: -1.00 -75.46 296.15 4.98 -70.48 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: 0.25 Total: 14.43 kcal Atomic # 6 Polarization: -61.85 SS G_CDS: 3.55 Total: -58.30 kcal Atomic # 7 Polarization: -73.40 SS G_CDS: -0.85 Total: -74.26 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Total: -75.46 4.98 -70.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259774748.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.864 kcal (2) G-P(sol) polarization free energy of solvation -75.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds