Wall clock time and date at job start Mon Mar 30 2020 06:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37800 * 120.10929 * 2 1 4 4 C 1.38789 * 120.66243 * 179.97438 * 3 2 1 5 5 C 1.50699 * 119.72856 * 179.97438 * 4 3 2 6 6 C 1.53003 * 109.47294 * 265.02023 * 5 4 3 7 7 C 1.50699 * 109.46916 * 180.02562 * 6 5 4 8 8 H 1.07997 * 120.00455 * 0.02562 * 7 6 5 9 9 C 1.37881 * 119.99836 * 180.02562 * 7 6 5 10 10 N 1.31512 * 119.99763 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99970 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47190 * 60.00101 * 11 9 7 13 13 H 1.48504 * 109.46906 * 180.02562 * 11 9 7 14 14 H 1.48496 * 109.46900 * 299.99632 * 11 9 7 15 15 C 1.36654 * 120.53424 * 0.02562 * 4 3 2 16 16 C 1.50699 * 120.11948 * 179.97438 * 15 4 3 17 17 C 1.39602 * 119.76319 * 359.97438 * 15 4 3 18 18 C 1.46483 * 134.03931 * 179.97438 * 17 15 4 19 19 C 1.34231 * 107.00127 * 180.02562 * 18 17 15 20 20 N 1.36837 * 109.93888 * 0.02562 * 19 18 17 21 21 H 0.97001 * 125.06225 * 179.97438 * 20 19 18 22 22 C 1.37687 * 109.87073 * 0.22871 * 20 19 18 23 23 H 1.09002 * 109.46766 * 89.99927 * 1 2 3 24 24 H 1.08995 * 109.46588 * 209.99580 * 1 2 3 25 25 H 1.08997 * 109.47011 * 330.00174 * 1 2 3 26 26 H 1.08000 * 119.66623 * 0.02562 * 3 2 1 27 27 H 1.08998 * 109.47845 * 25.02636 * 5 4 3 28 28 H 1.09002 * 109.46767 * 145.02382 * 5 4 3 29 29 H 1.08993 * 109.47536 * 300.00396 * 6 5 4 30 30 H 1.09000 * 109.46532 * 60.01116 * 6 5 4 31 31 H 0.96998 * 120.00024 * 180.02562 * 10 9 7 32 32 H 1.09009 * 109.46945 * 270.02034 * 16 15 4 33 33 H 1.08991 * 109.47195 * 30.02110 * 16 15 4 34 34 H 1.08998 * 109.46885 * 150.02535 * 16 15 4 35 35 H 1.07999 * 126.50085 * 0.02562 * 18 17 15 36 36 H 1.07999 * 125.03473 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1921 0.0000 4 6 3.5861 1.2055 0.0005 5 6 4.3208 2.5213 -0.0001 6 6 4.6793 2.9046 -1.4372 7 6 5.4145 4.2201 -1.4377 8 1 5.6071 4.7314 -0.5061 9 6 5.8412 4.7710 -2.6275 10 7 5.6061 4.1486 -3.7619 11 14 6.7531 6.4012 -2.6280 12 1 7.9962 6.2734 -1.8257 13 1 7.0999 6.7739 -4.0231 14 1 5.8876 7.4527 -2.0359 15 6 4.2917 0.0352 0.0005 16 6 5.7985 0.0606 0.0005 17 6 3.6117 -1.1840 0.0006 18 6 4.0354 -2.5863 0.0001 19 6 2.9201 -3.3332 -0.0002 20 7 1.8166 -2.5241 -0.0005 21 1 0.8977 -2.8349 -0.0012 22 6 2.2048 -1.2031 -0.0056 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3632 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5138 26 1 1.6546 2.1253 0.0004 27 1 3.6848 3.2928 0.4339 28 1 5.2329 2.4283 0.5895 29 1 5.3153 2.1332 -1.8712 30 1 3.7671 2.9976 -2.0267 31 1 5.9066 4.5359 -4.5989 32 1 6.1618 0.0671 -1.0272 33 1 6.1467 0.9564 0.5146 34 1 6.1768 -0.8233 0.5140 35 1 5.0522 -2.9501 0.0000 36 1 2.8971 -4.4130 -0.0010 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259777321.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:11 Heat of formation + Delta-G solvation = 29.660817 kcal Electronic energy + Delta-G solvation = -16837.449024 eV Core-core repulsion = 14285.792735 eV Total energy + Delta-G solvation = -2551.656289 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.00161 -37.49400 -34.24568 -33.14122 -31.32794 -29.44820 -28.81302 -28.06404 -25.09151 -24.08750 -21.59576 -21.56239 -19.87793 -19.52118 -17.06224 -16.26945 -15.67513 -14.79985 -14.52648 -14.36377 -13.83342 -13.08058 -13.00040 -12.91791 -12.81837 -12.62973 -12.23508 -12.15352 -11.94573 -11.52368 -11.38423 -10.95663 -10.83991 -10.51176 -10.42269 -10.25301 -9.62602 -9.39752 -9.11019 -8.99213 -8.27013 -7.66296 -7.10764 -5.92443 -3.95125 1.49347 2.11506 2.96454 3.34922 3.37587 3.41840 3.44333 4.28685 4.52102 4.98732 5.04256 5.21871 5.39131 5.42727 5.50878 5.59356 5.70248 5.85851 5.87796 5.97374 6.02583 6.18221 6.27961 6.30688 6.47092 6.55783 6.70470 6.83735 6.95199 7.01885 7.07878 7.20234 7.39168 7.63502 7.75157 7.78287 7.95391 8.09763 8.49803 9.12314 9.68294 11.18468 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.034100 B = 0.005339 C = 0.004941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.915477 B = 5243.018818 C = 5665.901195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.113 4.113 3 C -0.087 4.087 4 C -0.084 4.084 5 C -0.076 4.076 6 C 0.031 3.969 7 C -0.520 4.520 8 H 0.054 0.946 9 C 0.057 3.943 10 N -0.895 5.895 11 Si 0.890 3.110 12 H -0.277 1.277 13 H -0.288 1.288 14 H -0.277 1.277 15 C -0.043 4.043 16 C -0.112 4.112 17 C -0.104 4.104 18 C -0.200 4.200 19 C 0.035 3.965 20 N -0.600 5.600 21 H 0.409 0.591 22 C 0.088 3.912 23 H 0.063 0.937 24 H 0.050 0.950 25 H 0.067 0.933 26 H 0.123 0.877 27 H 0.054 0.946 28 H 0.061 0.939 29 H 0.019 0.981 30 H 0.015 0.985 31 H 0.260 0.740 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.054 0.946 35 H 0.141 0.859 36 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.592 -13.581 8.207 17.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.116 4.116 3 C -0.106 4.106 4 C -0.085 4.085 5 C -0.113 4.113 6 C -0.006 4.006 7 C -0.559 4.559 8 H 0.073 0.927 9 C -0.144 4.144 10 N -0.534 5.534 11 Si 0.718 3.282 12 H -0.203 1.203 13 H -0.214 1.214 14 H -0.203 1.203 15 C -0.043 4.043 16 C -0.168 4.168 17 C -0.108 4.108 18 C -0.226 4.226 19 C -0.090 4.090 20 N -0.203 5.203 21 H 0.245 0.755 22 C -0.018 4.018 23 H 0.082 0.918 24 H 0.069 0.931 25 H 0.086 0.914 26 H 0.141 0.859 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.037 0.963 30 H 0.033 0.967 31 H 0.070 0.930 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.073 0.927 35 H 0.159 0.841 36 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -7.665 -13.632 8.016 17.574 hybrid contribution 0.029 0.654 -0.243 0.699 sum -7.636 -12.978 7.773 16.945 Atomic orbital electron populations 1.20614 0.91923 1.01860 1.01708 1.18738 0.94821 0.90260 1.07792 1.20671 0.93760 0.96150 1.00049 1.19664 0.93222 0.95802 0.99858 1.20796 0.98058 0.90903 1.01543 1.19044 0.96539 0.95947 0.89078 1.21251 1.36152 1.05819 0.92635 0.92742 1.25012 0.96239 0.97419 0.95691 1.69968 1.46917 1.38918 0.97629 0.86692 0.80318 0.84302 0.76879 1.20256 1.21368 1.20299 1.18896 0.95741 0.90421 0.99290 1.20777 0.91389 1.01981 1.02646 1.18999 0.91721 0.93127 1.06944 1.21626 0.97843 0.91086 1.12059 1.21649 0.85792 0.95948 1.05647 1.41649 1.08031 1.04247 1.66419 0.75548 1.17958 0.93740 0.84225 1.05846 0.91777 0.93082 0.91436 0.85943 0.92713 0.92040 0.96277 0.96687 0.93035 0.90898 0.90788 0.92708 0.84128 0.81932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.24 10.02 36.01 0.36 -0.88 16 2 C -0.11 -1.80 5.89 -104.47 -0.62 -2.42 16 3 C -0.09 -1.56 9.29 -39.54 -0.37 -1.93 16 4 C -0.08 -1.67 5.10 -104.99 -0.54 -2.20 16 5 C -0.08 -1.64 4.75 -27.88 -0.13 -1.77 16 6 C 0.03 0.82 4.95 -27.88 -0.14 0.68 16 7 C -0.52 -14.89 9.11 -34.44 -0.31 -15.20 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 9 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 10 N -0.90 -27.38 13.29 55.43 0.74 -26.65 16 11 Si 0.89 21.88 29.54 -169.99 -5.02 16.85 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 14 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 15 C -0.04 -0.81 5.87 -104.69 -0.61 -1.42 16 16 C -0.11 -1.93 9.23 36.01 0.33 -1.60 16 17 C -0.10 -1.80 6.14 -105.14 -0.65 -2.45 16 18 C -0.20 -2.83 10.77 -37.67 -0.41 -3.24 16 19 C 0.04 0.41 11.81 -16.73 -0.20 0.21 16 20 N -0.60 -7.31 6.07 -10.65 -0.06 -7.38 16 21 H 0.41 3.63 8.87 -40.82 -0.36 3.27 16 22 C 0.09 1.41 6.95 -83.99 -0.58 0.82 16 23 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.05 0.51 8.00 -51.93 -0.42 0.09 16 25 H 0.07 0.74 8.09 -51.93 -0.42 0.32 16 26 H 0.12 2.04 8.06 -52.49 -0.42 1.61 16 27 H 0.05 1.14 8.05 -51.93 -0.42 0.72 16 28 H 0.06 1.28 6.11 -51.93 -0.32 0.96 16 29 H 0.02 0.53 7.80 -51.93 -0.41 0.13 16 30 H 0.01 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 32 H 0.07 1.33 8.09 -51.92 -0.42 0.91 16 33 H 0.07 1.29 5.98 -51.93 -0.31 0.98 16 34 H 0.05 0.80 7.90 -51.93 -0.41 0.39 16 35 H 0.14 1.72 8.06 -52.49 -0.42 1.30 16 36 H 0.16 1.19 8.06 -52.49 -0.42 0.77 16 LS Contribution 300.96 15.07 4.54 4.54 Total: -1.00 -32.66 300.96 -8.90 -41.57 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -5.13 Total: 0.89 kcal Atomic # 6 Polarization: -25.87 SS G_CDS: -3.95 Total: -29.83 kcal Atomic # 7 Polarization: -34.69 SS G_CDS: 0.67 Total: -34.02 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -32.66 -8.90 -41.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259777321.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.227 kcal (2) G-P(sol) polarization free energy of solvation -32.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds