Wall clock time and date at job start Mon Mar 30 2020 06:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37800 * 120.10929 * 2 1 4 4 C 1.38789 * 120.66243 * 179.97438 * 3 2 1 5 5 C 1.50699 * 119.72856 * 179.97438 * 4 3 2 6 6 C 1.53003 * 109.47294 * 265.02023 * 5 4 3 7 7 C 1.50699 * 109.46916 * 180.02562 * 6 5 4 8 8 H 1.07997 * 120.00455 * 0.02562 * 7 6 5 9 9 C 1.37881 * 119.99836 * 180.02562 * 7 6 5 10 10 N 1.31512 * 119.99763 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99970 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47190 * 60.00101 * 11 9 7 13 13 H 1.48504 * 109.46906 * 180.02562 * 11 9 7 14 14 H 1.48496 * 109.46900 * 299.99632 * 11 9 7 15 15 C 1.36654 * 120.53424 * 0.02562 * 4 3 2 16 16 C 1.50699 * 120.11948 * 179.97438 * 15 4 3 17 17 C 1.39602 * 119.76319 * 359.97438 * 15 4 3 18 18 C 1.46483 * 134.03931 * 179.97438 * 17 15 4 19 19 C 1.34231 * 107.00127 * 180.02562 * 18 17 15 20 20 N 1.36837 * 109.93888 * 0.02562 * 19 18 17 21 21 H 0.97001 * 125.06225 * 179.97438 * 20 19 18 22 22 C 1.37687 * 109.87073 * 0.22871 * 20 19 18 23 23 H 1.09002 * 109.46766 * 89.99927 * 1 2 3 24 24 H 1.08995 * 109.46588 * 209.99580 * 1 2 3 25 25 H 1.08997 * 109.47011 * 330.00174 * 1 2 3 26 26 H 1.08000 * 119.66623 * 0.02562 * 3 2 1 27 27 H 1.08998 * 109.47845 * 25.02636 * 5 4 3 28 28 H 1.09002 * 109.46767 * 145.02382 * 5 4 3 29 29 H 1.08993 * 109.47536 * 300.00396 * 6 5 4 30 30 H 1.09000 * 109.46532 * 60.01116 * 6 5 4 31 31 H 0.96998 * 120.00024 * 180.02562 * 10 9 7 32 32 H 1.09009 * 109.46945 * 270.02034 * 16 15 4 33 33 H 1.08991 * 109.47195 * 30.02110 * 16 15 4 34 34 H 1.08998 * 109.46885 * 150.02535 * 16 15 4 35 35 H 1.07999 * 126.50085 * 0.02562 * 18 17 15 36 36 H 1.07999 * 125.03473 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1921 0.0000 4 6 3.5861 1.2055 0.0005 5 6 4.3208 2.5213 -0.0001 6 6 4.6793 2.9046 -1.4372 7 6 5.4145 4.2201 -1.4377 8 1 5.6071 4.7314 -0.5061 9 6 5.8412 4.7710 -2.6275 10 7 5.6061 4.1486 -3.7619 11 14 6.7531 6.4012 -2.6280 12 1 7.9962 6.2734 -1.8257 13 1 7.0999 6.7739 -4.0231 14 1 5.8876 7.4527 -2.0359 15 6 4.2917 0.0352 0.0005 16 6 5.7985 0.0606 0.0005 17 6 3.6117 -1.1840 0.0006 18 6 4.0354 -2.5863 0.0001 19 6 2.9201 -3.3332 -0.0002 20 7 1.8166 -2.5241 -0.0005 21 1 0.8977 -2.8349 -0.0012 22 6 2.2048 -1.2031 -0.0056 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3632 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5138 26 1 1.6546 2.1253 0.0004 27 1 3.6848 3.2928 0.4339 28 1 5.2329 2.4283 0.5895 29 1 5.3153 2.1332 -1.8712 30 1 3.7671 2.9976 -2.0267 31 1 5.9066 4.5359 -4.5989 32 1 6.1618 0.0671 -1.0272 33 1 6.1467 0.9564 0.5146 34 1 6.1768 -0.8233 0.5140 35 1 5.0522 -2.9501 0.0000 36 1 2.8971 -4.4130 -0.0010 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259777321.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:10 Heat of formation + Delta-G solvation = 11.278339 kcal Electronic energy + Delta-G solvation = -16838.246148 eV Core-core repulsion = 14285.792735 eV Total energy + Delta-G solvation = -2552.453414 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.15221 -38.82366 -35.79545 -34.90624 -33.08340 -30.64928 -30.20114 -29.40708 -26.89696 -25.46343 -23.44947 -22.71732 -21.04824 -20.94150 -18.48650 -18.23022 -16.91582 -16.51825 -16.10948 -15.60951 -15.24591 -14.50342 -14.38345 -14.14219 -14.01887 -13.95506 -13.88121 -13.49810 -13.37675 -13.15850 -12.81132 -12.74722 -12.60437 -12.17906 -11.88941 -11.82331 -11.44750 -11.29488 -11.05378 -10.52034 -10.27042 -8.93854 -8.34119 -8.15554 -6.28753 0.26341 0.76479 1.40827 1.44627 1.52418 1.90941 2.35698 2.43040 2.95530 3.15742 3.84532 4.03821 4.06376 4.27453 4.33725 4.38788 4.54628 4.67923 4.72594 4.77468 4.78591 4.93412 4.95598 4.99729 5.02648 5.12813 5.19025 5.32316 5.42929 5.54105 5.65059 5.67356 5.84487 5.89899 5.91354 6.07456 6.26577 6.36441 6.84023 6.88239 7.40273 8.94962 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.034100 B = 0.005339 C = 0.004941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.915477 B = 5243.018818 C = 5665.901195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.105 4.105 3 C -0.116 4.116 4 C -0.111 4.111 5 C -0.060 4.060 6 C 0.043 3.957 7 C -0.543 4.543 8 H 0.062 0.938 9 C 0.000 4.000 10 N -0.935 5.935 11 Si 0.966 3.034 12 H -0.265 1.265 13 H -0.283 1.283 14 H -0.266 1.266 15 C -0.068 4.068 16 C -0.105 4.105 17 C -0.127 4.127 18 C -0.235 4.235 19 C 0.069 3.931 20 N -0.585 5.585 21 H 0.428 0.572 22 C 0.072 3.928 23 H 0.071 0.929 24 H 0.076 0.924 25 H 0.075 0.925 26 H 0.124 0.876 27 H 0.056 0.944 28 H 0.064 0.936 29 H -0.009 1.009 30 H -0.018 1.018 31 H 0.263 0.737 32 H 0.052 0.948 33 H 0.063 0.937 34 H 0.079 0.921 35 H 0.154 0.846 36 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.563 -15.175 9.156 19.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.108 4.108 3 C -0.135 4.135 4 C -0.112 4.112 5 C -0.097 4.097 6 C 0.005 3.995 7 C -0.581 4.581 8 H 0.080 0.920 9 C -0.198 4.198 10 N -0.575 5.575 11 Si 0.790 3.210 12 H -0.190 1.190 13 H -0.209 1.209 14 H -0.191 1.191 15 C -0.068 4.068 16 C -0.161 4.161 17 C -0.132 4.132 18 C -0.260 4.260 19 C -0.058 4.058 20 N -0.190 5.190 21 H 0.267 0.733 22 C -0.035 4.035 23 H 0.090 0.910 24 H 0.095 0.905 25 H 0.094 0.906 26 H 0.142 0.858 27 H 0.075 0.925 28 H 0.082 0.918 29 H 0.009 0.991 30 H 0.000 1.000 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.098 0.902 35 H 0.172 0.828 36 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -8.665 -15.241 8.983 19.700 hybrid contribution 0.260 0.978 -0.546 1.150 sum -8.405 -14.263 8.437 18.582 Atomic orbital electron populations 1.20689 0.88904 1.03624 1.02669 1.19097 0.96951 0.89522 1.05233 1.20776 0.93230 0.97457 1.02059 1.19579 0.94241 0.95010 1.02409 1.20507 0.98567 0.92556 0.98117 1.18839 0.94192 0.94766 0.91661 1.21689 1.36463 1.06694 0.93206 0.91993 1.26000 0.97036 1.01624 0.95107 1.70121 1.48050 1.40957 0.98395 0.85491 0.79164 0.79134 0.77198 1.19019 1.20867 1.19097 1.19073 0.96204 0.91137 1.00408 1.20696 0.91235 1.02673 1.01513 1.19409 0.92872 0.94088 1.06781 1.21912 0.99759 0.89732 1.14618 1.22421 0.84319 0.97871 1.01148 1.41717 1.09512 1.02797 1.64925 0.73252 1.18112 0.93463 0.85848 1.06035 0.91020 0.90477 0.90598 0.85766 0.92495 0.91774 0.99075 0.99974 0.92846 0.92888 0.91773 0.90202 0.82844 0.76779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.20 10.02 71.24 0.71 -1.49 16 2 C -0.11 -3.27 5.89 -19.76 -0.12 -3.39 16 3 C -0.12 -4.30 9.29 22.30 0.21 -4.09 16 4 C -0.11 -4.64 5.10 -20.10 -0.10 -4.74 16 5 C -0.06 -2.76 4.75 29.85 0.14 -2.62 16 6 C 0.04 2.40 4.95 29.85 0.15 2.55 16 7 C -0.54 -32.11 9.11 25.60 0.23 -31.88 16 8 H 0.06 3.48 7.74 -2.91 -0.02 3.46 16 9 C 0.00 -0.01 5.46 84.66 0.46 0.45 16 10 N -0.93 -59.05 13.29 21.45 0.28 -58.77 16 11 Si 0.97 45.39 29.54 68.60 2.03 47.41 16 12 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 13 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 14 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 15 C -0.07 -2.65 5.87 -19.91 -0.12 -2.77 16 16 C -0.10 -3.82 9.23 71.24 0.66 -3.16 16 17 C -0.13 -4.36 6.14 -20.20 -0.12 -4.48 16 18 C -0.24 -6.15 10.77 23.50 0.25 -5.90 16 19 C 0.07 1.29 11.81 83.00 0.98 2.27 16 20 N -0.58 -12.08 6.07 -187.61 -1.14 -13.22 16 21 H 0.43 5.61 8.87 -92.71 -0.82 4.79 16 22 C 0.07 2.20 6.95 39.03 0.27 2.47 16 23 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 24 H 0.08 1.25 8.00 -2.39 -0.02 1.23 16 25 H 0.08 1.52 8.09 -2.39 -0.02 1.50 16 26 H 0.12 4.34 8.06 -2.91 -0.02 4.32 16 27 H 0.06 2.50 8.05 -2.39 -0.02 2.48 16 28 H 0.06 2.83 6.11 -2.39 -0.01 2.81 16 29 H -0.01 -0.56 7.80 -2.39 -0.02 -0.58 16 30 H -0.02 -1.13 8.14 -2.39 -0.02 -1.15 16 31 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 32 H 0.05 2.09 8.09 -2.38 -0.02 2.07 16 33 H 0.06 2.39 5.98 -2.39 -0.01 2.38 16 34 H 0.08 2.40 7.90 -2.39 -0.02 2.38 16 35 H 0.15 3.46 8.06 -2.91 -0.02 3.44 16 36 H 0.22 1.76 8.06 -2.91 -0.02 1.73 16 Total: -1.00 -74.01 300.96 5.03 -68.98 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: 0.25 Total: 12.37 kcal Atomic # 6 Polarization: -60.38 SS G_CDS: 3.61 Total: -56.77 kcal Atomic # 7 Polarization: -71.13 SS G_CDS: -0.85 Total: -71.98 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.41 kcal Total: -74.01 5.03 -68.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259777321.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.254 kcal (2) G-P(sol) polarization free energy of solvation -74.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds