Wall clock time and date at job start Mon Mar 30 2020 06:14:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.36829 * 125.03664 * 2 1 4 4 H 0.97001 * 125.06264 * 0.03836 * 3 2 1 5 5 C 1.37682 * 109.87722 * 180.02562 * 3 2 1 6 6 C 1.39125 * 133.50802 * 180.02562 * 5 3 2 7 7 C 1.37745 * 119.78036 * 179.97438 * 6 5 3 8 8 C 1.38826 * 120.66763 * 0.02562 * 7 6 5 9 9 C 1.50703 * 119.73803 * 179.97438 * 8 7 6 10 10 C 1.52992 * 109.47317 * 89.99573 * 9 8 7 11 11 C 1.50703 * 109.46958 * 179.97438 * 10 9 8 12 12 H 1.07999 * 120.00048 * 0.02562 * 11 10 9 13 13 C 1.37881 * 119.99923 * 179.97438 * 11 10 9 14 14 N 1.31508 * 120.00129 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 119.99902 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.47113 * 90.00196 * 15 13 11 17 17 H 1.48498 * 109.46857 * 210.00076 * 15 13 11 18 18 H 1.48498 * 109.46958 * 330.00352 * 15 13 11 19 19 C 1.36629 * 120.52953 * 359.97438 * 8 7 6 20 20 C 1.39636 * 119.75900 * 359.69787 * 19 8 7 21 21 C 1.34243 * 125.03769 * 180.02562 * 2 1 3 22 22 C 1.50703 * 126.49902 * 359.97438 * 21 2 1 23 23 H 1.09000 * 109.46904 * 269.99917 * 1 2 3 24 24 H 1.08996 * 109.47220 * 30.00203 * 1 2 3 25 25 H 1.09001 * 109.46997 * 150.00052 * 1 2 3 26 26 H 1.07999 * 120.10805 * 0.02562 * 6 5 3 27 27 H 1.08006 * 119.66446 * 179.97438 * 7 6 5 28 28 H 1.09000 * 109.46824 * 210.00225 * 9 8 7 29 29 H 1.09005 * 109.46606 * 329.99590 * 9 8 7 30 30 H 1.08993 * 109.47354 * 300.00019 * 10 9 8 31 31 H 1.09005 * 109.47268 * 60.00422 * 10 9 8 32 32 H 0.97001 * 120.00387 * 179.97438 * 14 13 11 33 33 H 1.07994 * 120.12081 * 179.97438 * 19 8 7 34 34 H 1.09002 * 109.47152 * 90.02575 * 22 21 2 35 35 H 1.09001 * 109.46980 * 330.02675 * 22 21 2 36 36 H 1.09004 * 109.47113 * 210.02656 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2925 1.1203 0.0000 4 1 1.9623 2.0324 0.0005 5 6 3.6214 0.7603 -0.0006 6 6 4.8097 1.4837 -0.0004 7 6 6.0158 0.8183 -0.0006 8 6 6.0589 -0.5693 -0.0016 9 6 7.3901 -1.2758 -0.0024 10 6 7.8410 -1.5158 1.4398 11 6 9.1718 -2.2229 1.4389 12 1 9.6485 -2.4754 0.5032 13 6 9.7814 -2.5465 2.6325 14 7 9.2012 -2.2385 3.7718 15 14 11.4314 -3.4223 2.6314 16 1 12.5250 -2.4178 2.6312 17 1 11.5409 -4.2731 3.8436 18 1 11.5398 -4.2722 1.4185 19 6 4.9042 -1.2995 -0.0018 20 6 3.6705 -0.6455 0.0054 21 6 2.2776 -1.0991 -0.0005 22 6 1.8004 -2.5286 -0.0006 23 1 -0.3633 0.0000 1.0277 24 1 -0.3633 0.8899 -0.5138 25 1 -0.3633 -0.8900 -0.5138 26 1 4.7867 2.5635 0.0008 27 1 6.9372 1.3818 -0.0009 28 1 7.2936 -2.2319 -0.5169 29 1 8.1281 -0.6596 -0.5161 30 1 7.9375 -0.5597 1.9542 31 1 7.1030 -2.1320 1.9535 32 1 9.6298 -2.4665 4.6116 33 1 4.9454 -2.3787 -0.0029 34 1 1.6854 -2.8732 -1.0283 35 1 0.8411 -2.5914 0.5132 36 1 2.5295 -3.1551 0.5133 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259817325.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:57 Heat of formation + Delta-G solvation = 25.818957 kcal Electronic energy + Delta-G solvation = -16446.851306 eV Core-core repulsion = 13895.028421 eV Total energy + Delta-G solvation = -2551.822885 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.06462 -37.30965 -33.70446 -32.94650 -31.62256 -30.57350 -29.04687 -27.41760 -25.67778 -24.58870 -21.81225 -21.23285 -19.96775 -18.76467 -17.32383 -16.31996 -15.63898 -14.83372 -14.65756 -14.40926 -13.76307 -13.59505 -13.01967 -12.96013 -12.72956 -12.55275 -12.41050 -12.33273 -12.12835 -11.72026 -11.44666 -11.20159 -10.89219 -10.52376 -10.46064 -10.40234 -9.71396 -9.43480 -9.13549 -9.00728 -8.28515 -7.58629 -7.21093 -5.93267 -3.96066 1.48783 2.09034 2.84182 3.26852 3.35982 3.42011 3.45633 4.34819 4.51949 4.74970 4.99452 5.17197 5.24810 5.34733 5.39936 5.42022 5.59928 5.63475 5.68652 5.84440 5.97817 6.01231 6.02800 6.21315 6.34790 6.42926 6.61823 6.77792 6.88976 7.00239 7.11802 7.17897 7.33536 7.59739 7.75095 7.76793 7.93191 8.08204 8.48687 9.11480 9.67534 11.17728 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.038775 B = 0.004513 C = 0.004280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.940000 B = 6202.816443 C = 6540.552169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.062 3.938 3 N -0.597 5.597 4 H 0.408 0.592 5 C 0.084 3.916 6 C -0.137 4.137 7 C -0.090 4.090 8 C -0.082 4.082 9 C -0.075 4.075 10 C 0.029 3.971 11 C -0.521 4.521 12 H 0.055 0.945 13 C 0.057 3.943 14 N -0.895 5.895 15 Si 0.891 3.109 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.274 1.274 19 C -0.076 4.076 20 C -0.098 4.098 21 C -0.172 4.172 22 C -0.076 4.076 23 H 0.073 0.927 24 H 0.063 0.937 25 H 0.081 0.919 26 H 0.113 0.887 27 H 0.124 0.876 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.017 0.983 31 H 0.017 0.983 32 H 0.260 0.740 33 H 0.119 0.881 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.826 5.711 -8.293 19.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.045 4.045 3 N -0.202 5.202 4 H 0.244 0.756 5 C -0.022 4.022 6 C -0.157 4.157 7 C -0.109 4.109 8 C -0.083 4.083 9 C -0.112 4.112 10 C -0.008 4.008 11 C -0.559 4.559 12 H 0.074 0.926 13 C -0.144 4.144 14 N -0.534 5.534 15 Si 0.719 3.281 16 H -0.207 1.207 17 H -0.213 1.213 18 H -0.199 1.199 19 C -0.094 4.094 20 C -0.103 4.103 21 C -0.180 4.180 22 C -0.133 4.133 23 H 0.091 0.909 24 H 0.082 0.918 25 H 0.100 0.900 26 H 0.131 0.869 27 H 0.142 0.858 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.035 0.965 31 H 0.035 0.965 32 H 0.069 0.931 33 H 0.137 0.863 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -16.873 5.791 -8.103 19.593 hybrid contribution 0.833 0.133 0.243 0.878 sum -16.040 5.924 -7.860 18.818 Atomic orbital electron populations 1.20394 0.88271 1.03182 1.02726 1.19945 0.92849 0.85751 1.05929 1.41524 1.04131 1.07551 1.66957 0.75566 1.18131 0.84193 0.94201 1.05627 1.19917 0.89754 0.98400 1.07669 1.20792 0.96502 0.94167 0.99421 1.19831 0.96212 0.93417 0.98876 1.20762 0.90813 0.98175 1.01468 1.19080 0.95716 0.96962 0.89057 1.21291 1.04728 1.37607 0.92279 0.92629 1.25022 0.97667 0.96056 0.95677 1.69977 1.38687 1.47533 0.97225 0.86614 0.84351 0.79681 0.77475 1.20719 1.21277 1.19860 1.20148 0.89822 0.99482 0.99977 1.19051 0.92947 0.91889 1.06384 1.20030 0.90897 0.94527 1.12518 1.20086 1.00508 0.91443 1.01264 0.90859 0.91780 0.90004 0.86883 0.85816 0.92449 0.92457 0.96505 0.96454 0.93067 0.86308 0.92229 0.92333 0.91610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.71 9.98 36.00 0.36 -0.35 16 2 C 0.06 0.78 7.08 -81.77 -0.58 0.20 16 3 N -0.60 -7.61 6.07 -6.96 -0.04 -7.66 16 4 H 0.41 3.82 8.96 -40.82 -0.37 3.45 16 5 C 0.08 1.35 7.28 -83.99 -0.61 0.74 16 6 C -0.14 -2.16 10.08 -39.43 -0.40 -2.56 16 7 C -0.09 -1.59 9.66 -39.54 -0.38 -1.97 16 8 C -0.08 -1.62 5.10 -104.98 -0.54 -2.15 16 9 C -0.07 -1.62 5.26 -27.89 -0.15 -1.77 16 10 C 0.03 0.77 4.96 -27.89 -0.14 0.64 16 11 C -0.52 -15.04 9.11 -34.44 -0.31 -15.35 16 12 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 13 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 14 N -0.89 -27.52 13.29 55.43 0.74 -26.78 16 15 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 16 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 17 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 18 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 19 C -0.08 -1.43 9.67 -39.64 -0.38 -1.81 16 20 C -0.10 -1.72 6.35 -105.14 -0.67 -2.39 16 21 C -0.17 -2.53 6.31 -102.71 -0.65 -3.18 16 22 C -0.08 -0.90 9.96 36.01 0.36 -0.54 16 23 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.08 0.57 7.66 -51.93 -0.40 0.18 16 26 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 27 H 0.12 2.03 8.06 -52.48 -0.42 1.60 16 28 H 0.06 1.20 8.07 -51.93 -0.42 0.79 16 29 H 0.06 1.19 8.08 -51.93 -0.42 0.77 16 30 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 33 H 0.12 2.15 8.06 -52.49 -0.42 1.73 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.57 7.69 -51.93 -0.40 0.17 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 LS Contribution 306.02 15.07 4.61 4.61 Total: -1.00 -32.91 306.02 -9.25 -42.15 By element: Atomic # 1 Polarization: 5.02 SS G_CDS: -5.35 Total: -0.33 kcal Atomic # 6 Polarization: -24.75 SS G_CDS: -4.18 Total: -28.93 kcal Atomic # 7 Polarization: -35.13 SS G_CDS: 0.69 Total: -34.44 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -32.91 -9.25 -42.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259817325.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.972 kcal (2) G-P(sol) polarization free energy of solvation -32.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds