Wall clock time and date at job start Mon Mar 30 2020 06:16:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.50694 * 109.47080 * 2 1 4 4 N 1.35638 * 125.35323 * 265.02216 * 3 2 1 5 5 H 0.96995 * 124.69172 * 0.02647 * 4 3 2 6 6 C 1.38156 * 110.61769 * 180.02562 * 4 3 2 7 7 C 1.40382 * 107.88973 * 0.02562 * 6 4 3 8 8 C 1.39150 * 120.16042 * 179.97438 * 7 6 4 9 9 C 1.37924 * 119.69187 * 359.97438 * 8 7 6 10 10 C 1.38625 * 120.25141 * 0.02562 * 9 8 7 11 11 C 1.50694 * 119.68822 * 179.97438 * 10 9 8 12 12 C 1.37908 * 120.62614 * 359.97438 * 10 9 8 13 13 C 1.50698 * 120.01610 * 179.97438 * 12 10 9 14 14 C 1.38900 * 125.35360 * 84.72456 * 3 2 1 15 15 C 1.40894 * 126.92980 * 359.96029 * 14 3 2 16 16 H 1.07997 * 119.99525 * 30.92003 * 15 14 3 17 17 C 1.39741 * 119.99780 * 210.91527 * 15 14 3 18 18 N 1.31044 * 120.00175 * 19.37101 * 17 15 14 19 19 Si 1.86796 * 119.99661 * 199.37421 * 17 15 14 20 20 H 1.48501 * 109.47300 * 60.00086 * 19 17 15 21 21 H 1.48503 * 109.47495 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.47476 * 299.99958 * 19 17 15 23 23 H 1.09004 * 109.46785 * 299.99975 * 1 2 3 24 24 H 1.08999 * 109.47385 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.46824 * 59.99755 * 1 2 3 26 26 H 1.09002 * 109.46505 * 119.99837 * 2 1 3 27 27 H 1.08995 * 109.46583 * 239.99451 * 2 1 3 28 28 H 1.07998 * 120.15551 * 179.97438 * 8 7 6 29 29 H 1.07999 * 119.87254 * 180.02562 * 9 8 7 30 30 H 1.08997 * 109.47312 * 270.01367 * 11 10 9 31 31 H 1.09004 * 109.47298 * 30.02209 * 11 10 9 32 32 H 1.09005 * 109.47664 * 150.01358 * 11 10 9 33 33 H 1.09000 * 109.47198 * 270.02102 * 13 12 10 34 34 H 1.09001 * 109.47211 * 30.02729 * 13 12 10 35 35 H 1.09005 * 109.47001 * 150.02306 * 13 12 10 36 36 H 0.97004 * 119.99921 * 175.20065 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.3845 2.1287 -1.1021 5 1 2.3484 1.7904 -2.0104 6 6 2.8017 3.3984 -0.7520 7 6 2.7137 3.5114 0.6445 8 6 3.0764 4.6981 1.2741 9 6 3.5234 5.7628 0.5198 10 6 3.6111 5.6535 -0.8594 11 6 4.1006 6.8249 -1.6712 12 6 3.2547 4.4830 -1.4955 13 6 3.3550 4.3795 -2.9955 14 6 2.2021 2.2132 1.1281 15 6 1.9421 1.8504 2.4644 16 1 2.0596 0.8236 2.7777 17 6 1.5323 2.8192 3.3843 18 7 1.0275 3.9522 2.9616 19 14 1.7041 2.4991 5.2166 20 1 3.1339 2.2722 5.5476 21 1 1.2018 3.6737 5.9737 22 1 0.9139 1.2971 5.5855 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 3.0083 4.7852 2.3484 29 1 3.8061 6.6851 1.0054 30 1 3.2537 7.4494 -1.9553 31 1 4.8015 7.4113 -1.0770 32 1 4.6011 6.4613 -2.5688 33 1 2.4141 4.6966 -3.4453 34 1 4.1619 5.0204 -3.3509 35 1 3.5614 3.3464 -3.2755 36 1 0.6790 4.5955 3.5985 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259844491.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:18 Heat of formation + Delta-G solvation = 27.422373 kcal Electronic energy + Delta-G solvation = -17442.681247 eV Core-core repulsion = 14890.927891 eV Total energy + Delta-G solvation = -2551.753356 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.80542 -36.55921 -33.69516 -32.49717 -31.87305 -29.57367 -28.99435 -26.12439 -25.24696 -24.46058 -22.29365 -20.57285 -19.33230 -18.62014 -16.36737 -15.95730 -14.88805 -14.58930 -14.28856 -13.79080 -13.44741 -13.28777 -12.70881 -12.49927 -12.35385 -12.27379 -11.95358 -11.76028 -11.36957 -11.31063 -11.14622 -11.02073 -10.81207 -10.53969 -10.27715 -10.12294 -9.91490 -9.87897 -9.30312 -8.86850 -7.95475 -6.77793 -6.56430 -6.20380 -3.92652 2.35178 2.83675 3.13238 3.20128 3.24130 4.02523 4.16191 4.50350 4.97806 5.48972 5.57708 5.73203 5.75823 5.88681 5.92815 5.95041 5.98105 6.20650 6.24849 6.28785 6.30163 6.40085 6.48516 6.56950 6.66040 6.85567 7.00326 7.04962 7.07238 7.22999 7.38558 7.45027 7.67904 7.82609 8.02961 8.30120 8.42740 8.75522 8.90161 9.19579 9.21479 10.53465 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.019583 B = 0.009925 C = 0.006913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.448700 B = 2820.540213 C = 4049.384118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.016 4.016 3 C -0.123 4.123 4 N -0.588 5.588 5 H 0.389 0.611 6 C 0.105 3.895 7 C -0.102 4.102 8 C -0.011 4.011 9 C -0.199 4.199 10 C -0.079 4.079 11 C -0.104 4.104 12 C -0.140 4.140 13 C -0.099 4.099 14 C 0.079 3.921 15 C -0.459 4.459 16 H 0.073 0.927 17 C 0.080 3.920 18 N -0.809 5.809 19 Si 0.895 3.105 20 H -0.268 1.268 21 H -0.282 1.282 22 H -0.270 1.270 23 H 0.065 0.935 24 H 0.037 0.963 25 H 0.040 0.960 26 H 0.067 0.933 27 H 0.038 0.962 28 H 0.118 0.882 29 H 0.100 0.900 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.053 0.947 34 H 0.060 0.940 35 H 0.046 0.954 36 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.419 0.388 -5.920 6.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.055 4.055 3 C -0.226 4.226 4 N -0.190 5.190 5 H 0.222 0.778 6 C -0.006 4.006 7 C -0.108 4.108 8 C -0.029 4.029 9 C -0.219 4.219 10 C -0.080 4.080 11 C -0.160 4.160 12 C -0.143 4.143 13 C -0.156 4.156 14 C 0.073 3.927 15 C -0.491 4.491 16 H 0.091 0.909 17 C -0.135 4.135 18 N -0.437 5.437 19 Si 0.721 3.279 20 H -0.193 1.193 21 H -0.207 1.207 22 H -0.195 1.195 23 H 0.084 0.916 24 H 0.056 0.944 25 H 0.059 0.941 26 H 0.086 0.914 27 H 0.056 0.944 28 H 0.135 0.865 29 H 0.118 0.882 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.065 0.935 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.323 0.491 -5.888 6.349 hybrid contribution -0.137 -0.149 0.508 0.547 sum 2.185 0.342 -5.380 5.817 Atomic orbital electron populations 1.21736 0.96596 0.99353 1.02158 1.19482 0.94570 0.91337 1.00062 1.20130 1.20558 0.96473 0.85437 1.40839 1.60529 1.10452 1.07205 0.77818 1.17971 1.02124 0.85948 0.94529 1.19255 1.04339 0.96303 0.90921 1.20608 0.92214 0.90668 0.99439 1.20471 1.09724 0.98820 0.92928 1.19026 1.01580 0.93719 0.93686 1.20705 1.00105 0.96181 0.99047 1.18320 1.09252 0.93039 0.93703 1.20576 1.00915 1.00705 0.93368 1.17762 0.94790 0.88566 0.91554 1.18466 1.43253 0.95165 0.92224 0.90861 1.25645 0.93435 0.94253 1.00123 1.69939 1.29656 1.07943 1.36181 0.86593 0.79530 0.78414 0.83372 1.19250 1.20746 1.19470 0.91618 0.94370 0.94113 0.91442 0.94355 0.86459 0.88192 0.92406 0.92621 0.92299 0.92847 0.92101 0.93541 0.91524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 9.90 37.16 0.37 -2.22 16 2 C -0.02 -0.32 6.22 -27.88 -0.17 -0.49 16 3 C -0.12 -2.88 6.48 -80.67 -0.52 -3.40 16 4 N -0.59 -12.72 5.99 -6.14 -0.04 -12.76 16 5 H 0.39 7.06 8.75 -40.82 -0.36 6.70 16 6 C 0.10 2.45 6.90 -83.89 -0.58 1.87 16 7 C -0.10 -2.65 5.78 -104.90 -0.61 -3.26 16 8 C -0.01 -0.27 8.75 -39.36 -0.34 -0.61 16 9 C -0.20 -4.31 9.68 -39.55 -0.38 -4.70 16 10 C -0.08 -1.58 5.88 -104.60 -0.61 -2.19 16 11 C -0.10 -1.58 9.58 36.00 0.34 -1.24 16 12 C -0.14 -2.87 5.90 -104.43 -0.62 -3.48 16 13 C -0.10 -1.59 9.59 36.00 0.35 -1.24 16 14 C 0.08 2.11 5.72 -104.79 -0.60 1.51 16 15 C -0.46 -12.23 8.96 -38.02 -0.34 -12.58 16 16 H 0.07 1.89 7.63 -52.49 -0.40 1.49 16 17 C 0.08 2.06 4.89 -17.33 -0.08 1.98 16 18 N -0.81 -21.52 10.33 55.54 0.57 -20.94 16 19 Si 0.90 19.38 29.60 -169.99 -5.03 14.35 16 20 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 21 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 22 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 23 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 24 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 26 H 0.07 1.33 7.78 -51.93 -0.40 0.93 16 27 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.12 3.00 6.34 -52.49 -0.33 2.67 16 29 H 0.10 1.92 8.06 -52.49 -0.42 1.49 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.05 0.77 8.08 -51.93 -0.42 0.35 16 32 H 0.06 0.80 5.91 -51.93 -0.31 0.49 16 33 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.06 0.85 5.91 -51.93 -0.31 0.55 16 35 H 0.05 0.70 7.88 -51.93 -0.41 0.29 16 36 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 LS Contribution 294.95 15.07 4.44 4.44 Total: -1.00 -28.58 294.95 -8.89 -37.46 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: -5.03 Total: 7.50 kcal Atomic # 6 Polarization: -26.25 SS G_CDS: -3.81 Total: -30.06 kcal Atomic # 7 Polarization: -34.24 SS G_CDS: 0.54 Total: -33.70 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -5.03 Total: 14.35 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -28.58 -8.89 -37.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259844491.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.887 kcal (2) G-P(sol) polarization free energy of solvation -28.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds