Wall clock time and date at job start Mon Mar 30 2020 06:16:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.50694 * 109.47080 * 2 1 4 4 N 1.35638 * 125.35323 * 265.02216 * 3 2 1 5 5 H 0.96995 * 124.69172 * 0.02647 * 4 3 2 6 6 C 1.38156 * 110.61769 * 180.02562 * 4 3 2 7 7 C 1.40382 * 107.88973 * 0.02562 * 6 4 3 8 8 C 1.39150 * 120.16042 * 179.97438 * 7 6 4 9 9 C 1.37924 * 119.69187 * 359.97438 * 8 7 6 10 10 C 1.38625 * 120.25141 * 0.02562 * 9 8 7 11 11 C 1.50694 * 119.68822 * 179.97438 * 10 9 8 12 12 C 1.37908 * 120.62614 * 359.97438 * 10 9 8 13 13 C 1.50698 * 120.01610 * 179.97438 * 12 10 9 14 14 C 1.38900 * 125.35360 * 84.72456 * 3 2 1 15 15 C 1.40894 * 126.92980 * 359.96029 * 14 3 2 16 16 H 1.07997 * 119.99525 * 30.92003 * 15 14 3 17 17 C 1.39741 * 119.99780 * 210.91527 * 15 14 3 18 18 N 1.31044 * 120.00175 * 19.37101 * 17 15 14 19 19 Si 1.86796 * 119.99661 * 199.37421 * 17 15 14 20 20 H 1.48501 * 109.47300 * 60.00086 * 19 17 15 21 21 H 1.48503 * 109.47495 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.47476 * 299.99958 * 19 17 15 23 23 H 1.09004 * 109.46785 * 299.99975 * 1 2 3 24 24 H 1.08999 * 109.47385 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.46824 * 59.99755 * 1 2 3 26 26 H 1.09002 * 109.46505 * 119.99837 * 2 1 3 27 27 H 1.08995 * 109.46583 * 239.99451 * 2 1 3 28 28 H 1.07998 * 120.15551 * 179.97438 * 8 7 6 29 29 H 1.07999 * 119.87254 * 180.02562 * 9 8 7 30 30 H 1.08997 * 109.47312 * 270.01367 * 11 10 9 31 31 H 1.09004 * 109.47298 * 30.02209 * 11 10 9 32 32 H 1.09005 * 109.47664 * 150.01358 * 11 10 9 33 33 H 1.09000 * 109.47198 * 270.02102 * 13 12 10 34 34 H 1.09001 * 109.47211 * 30.02729 * 13 12 10 35 35 H 1.09005 * 109.47001 * 150.02306 * 13 12 10 36 36 H 0.97004 * 119.99921 * 175.20065 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.3845 2.1287 -1.1021 5 1 2.3484 1.7904 -2.0104 6 6 2.8017 3.3984 -0.7520 7 6 2.7137 3.5114 0.6445 8 6 3.0764 4.6981 1.2741 9 6 3.5234 5.7628 0.5198 10 6 3.6111 5.6535 -0.8594 11 6 4.1006 6.8249 -1.6712 12 6 3.2547 4.4830 -1.4955 13 6 3.3550 4.3795 -2.9955 14 6 2.2021 2.2132 1.1281 15 6 1.9421 1.8504 2.4644 16 1 2.0596 0.8236 2.7777 17 6 1.5323 2.8192 3.3843 18 7 1.0275 3.9522 2.9616 19 14 1.7041 2.4991 5.2166 20 1 3.1339 2.2722 5.5476 21 1 1.2018 3.6737 5.9737 22 1 0.9139 1.2971 5.5855 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 3.0083 4.7852 2.3484 29 1 3.8061 6.6851 1.0054 30 1 3.2537 7.4494 -1.9553 31 1 4.8015 7.4113 -1.0770 32 1 4.6011 6.4613 -2.5688 33 1 2.4141 4.6966 -3.4453 34 1 4.1619 5.0204 -3.3509 35 1 3.5614 3.3464 -3.2755 36 1 0.6790 4.5955 3.5985 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259844491.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:18 Heat of formation + Delta-G solvation = 12.660479 kcal Electronic energy + Delta-G solvation = -17443.321371 eV Core-core repulsion = 14890.927891 eV Total energy + Delta-G solvation = -2552.393479 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.54226 -38.19653 -35.54710 -34.06924 -33.54515 -31.07219 -30.77649 -27.71895 -26.91722 -26.10173 -23.91687 -22.24650 -21.13627 -20.33409 -18.14207 -17.76503 -16.65924 -16.31417 -15.84310 -15.33866 -14.99586 -14.86373 -14.32830 -14.17388 -13.96567 -13.61593 -13.48146 -13.21392 -13.04934 -12.81888 -12.70379 -12.67867 -12.40215 -12.09320 -11.93760 -11.80953 -11.59459 -11.52968 -11.05102 -10.75267 -9.70295 -8.52341 -8.45058 -8.01283 -5.86806 0.63381 1.09561 1.37992 1.42277 1.50149 2.20320 2.35136 2.81625 3.17178 3.60844 4.17313 4.30704 4.31123 4.41242 4.47627 4.50026 4.70971 4.72793 4.81384 4.92493 4.95982 5.00395 5.06043 5.12388 5.18364 5.25901 5.33795 5.36757 5.45708 5.53074 5.60512 5.70098 5.99911 6.06596 6.25381 6.51363 6.52203 6.88840 7.13029 7.26757 7.44763 8.65710 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.019583 B = 0.009925 C = 0.006913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.448700 B = 2820.540213 C = 4049.384118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.018 4.018 3 C -0.107 4.107 4 N -0.578 5.578 5 H 0.407 0.593 6 C 0.083 3.917 7 C -0.142 4.142 8 C -0.045 4.045 9 C -0.198 4.198 10 C -0.086 4.086 11 C -0.099 4.099 12 C -0.138 4.138 13 C -0.095 4.095 14 C 0.021 3.979 15 C -0.487 4.487 16 H 0.067 0.933 17 C 0.038 3.962 18 N -0.843 5.843 19 Si 0.960 3.040 20 H -0.269 1.269 21 H -0.276 1.276 22 H -0.262 1.262 23 H 0.031 0.969 24 H 0.073 0.927 25 H 0.043 0.957 26 H 0.061 0.939 27 H 0.072 0.928 28 H 0.094 0.906 29 H 0.120 0.880 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.066 0.934 34 H 0.087 0.913 35 H 0.055 0.945 36 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.000 0.510 -8.236 8.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.056 4.056 3 C -0.211 4.211 4 N -0.183 5.183 5 H 0.244 0.756 6 C -0.027 4.027 7 C -0.148 4.148 8 C -0.064 4.064 9 C -0.218 4.218 10 C -0.087 4.087 11 C -0.155 4.155 12 C -0.142 4.142 13 C -0.152 4.152 14 C 0.015 3.985 15 C -0.520 4.520 16 H 0.085 0.915 17 C -0.173 4.173 18 N -0.472 5.472 19 Si 0.783 3.217 20 H -0.194 1.194 21 H -0.201 1.201 22 H -0.187 1.187 23 H 0.050 0.950 24 H 0.092 0.908 25 H 0.063 0.937 26 H 0.080 0.920 27 H 0.090 0.910 28 H 0.112 0.888 29 H 0.138 0.862 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.100 0.900 33 H 0.085 0.915 34 H 0.106 0.894 35 H 0.074 0.926 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.909 0.609 -8.239 8.758 hybrid contribution -0.276 -0.181 1.065 1.115 sum 2.633 0.428 -7.173 7.653 Atomic orbital electron populations 1.21625 0.95475 1.01218 1.00608 1.19612 0.95398 0.89213 1.01390 1.20723 1.17593 0.97547 0.85285 1.40780 1.59824 1.09902 1.07747 0.75629 1.18323 1.03073 0.87292 0.94004 1.19577 1.05709 0.96713 0.92787 1.20591 0.94968 0.92062 0.98769 1.20805 1.08336 0.98484 0.94170 1.19599 1.00421 0.95325 0.93337 1.20757 1.01009 0.94406 0.99318 1.18911 1.07015 0.91945 0.96321 1.20642 1.02653 1.02179 0.89691 1.18206 0.97414 0.90263 0.92654 1.18630 1.44776 0.95229 0.93415 0.91516 1.26326 0.92919 0.93993 1.04018 1.70032 1.31081 1.08868 1.37259 0.85591 0.79226 0.78503 0.78330 1.19382 1.20114 1.18657 0.95016 0.90779 0.93746 0.92023 0.90968 0.88840 0.86204 0.90958 0.91226 0.89966 0.91512 0.89399 0.92584 0.91617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.69 9.90 71.99 0.71 -3.98 16 2 C -0.02 -0.68 6.22 29.85 0.19 -0.50 16 3 C -0.11 -5.04 6.48 42.13 0.27 -4.77 16 4 N -0.58 -24.56 5.99 -173.35 -1.04 -25.60 16 5 H 0.41 13.89 8.75 -92.71 -0.81 13.08 16 6 C 0.08 3.87 6.90 38.87 0.27 4.14 16 7 C -0.14 -7.67 5.78 -20.04 -0.12 -7.79 16 8 C -0.05 -2.35 8.75 22.41 0.20 -2.15 16 9 C -0.20 -8.60 9.68 22.29 0.22 -8.38 16 10 C -0.09 -3.25 5.88 -19.85 -0.12 -3.36 16 11 C -0.10 -2.60 9.58 71.23 0.68 -1.92 16 12 C -0.14 -5.42 5.90 -19.74 -0.12 -5.53 16 13 C -0.10 -2.66 9.59 71.24 0.68 -1.98 16 14 C 0.02 1.15 5.72 -19.98 -0.11 1.03 16 15 C -0.49 -27.47 8.96 23.28 0.21 -27.26 16 16 H 0.07 3.65 7.63 -2.91 -0.02 3.63 16 17 C 0.04 2.07 4.89 85.17 0.42 2.49 16 18 N -0.84 -47.48 10.33 21.80 0.23 -47.26 16 19 Si 0.96 41.70 29.60 68.60 2.03 43.73 16 20 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 21 H -0.28 -11.56 7.11 99.48 0.71 -10.85 16 22 H -0.26 -10.91 7.11 99.48 0.71 -10.21 16 23 H 0.03 1.32 8.14 -2.38 -0.02 1.30 16 24 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 25 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 26 H 0.06 2.42 7.78 -2.39 -0.02 2.40 16 27 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 28 H 0.09 5.16 6.34 -2.91 -0.02 5.14 16 29 H 0.12 4.54 8.06 -2.91 -0.02 4.52 16 30 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.07 1.66 8.08 -2.38 -0.02 1.64 16 32 H 0.08 1.80 5.91 -2.38 -0.01 1.79 16 33 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.09 2.00 5.91 -2.39 -0.01 1.98 16 35 H 0.06 1.46 7.88 -2.38 -0.02 1.44 16 36 H 0.27 14.40 8.31 -92.71 -0.77 13.63 16 Total: -1.00 -66.05 294.95 4.87 -61.18 By element: Atomic # 1 Polarization: 27.64 SS G_CDS: 0.27 Total: 27.91 kcal Atomic # 6 Polarization: -63.35 SS G_CDS: 3.38 Total: -59.97 kcal Atomic # 7 Polarization: -72.04 SS G_CDS: -0.81 Total: -72.86 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 2.03 Total: 43.73 kcal Total: -66.05 4.87 -61.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259844491.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.845 kcal (2) G-P(sol) polarization free energy of solvation -66.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds