Wall clock time and date at job start Mon Mar 30 2020 06:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37791 * 120.11456 * 2 1 4 4 C 1.38785 * 120.66569 * 180.25618 * 3 2 1 5 5 C 1.36662 * 120.52759 * 359.43933 * 4 3 2 6 6 C 1.39592 * 119.76498 * 0.55200 * 5 4 3 7 7 C 1.46486 * 134.03345 * 179.75021 * 6 5 4 8 8 C 1.50702 * 126.50303 * 359.94650 * 7 6 5 9 9 C 1.52998 * 109.47183 * 85.01574 * 8 7 6 10 10 C 1.52998 * 109.47108 * 180.02562 * 9 8 7 11 11 C 1.50699 * 109.47370 * 179.97438 * 10 9 8 12 12 H 1.08004 * 119.99660 * 359.97438 * 11 10 9 13 13 C 1.37872 * 120.00643 * 179.97438 * 11 10 9 14 14 N 1.31521 * 119.99612 * 0.02562 * 13 11 10 15 15 Si 1.86794 * 120.00453 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.46961 * 60.00450 * 15 13 11 17 17 H 1.48497 * 109.47342 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.47496 * 300.00376 * 15 13 11 19 19 C 1.34236 * 106.99841 * 179.97438 * 7 6 5 20 20 N 1.36834 * 109.93838 * 359.97438 * 19 7 6 21 21 H 0.96999 * 125.06376 * 179.97438 * 20 19 7 22 22 C 1.37688 * 109.87351 * 0.02562 * 20 19 7 23 23 H 1.09003 * 109.46914 * 89.99357 * 1 2 3 24 24 H 1.08996 * 109.47631 * 209.99899 * 1 2 3 25 25 H 1.09006 * 109.47038 * 330.00455 * 1 2 3 26 26 H 1.08002 * 119.66240 * 359.97365 * 3 2 1 27 27 H 1.08002 * 119.73446 * 179.70213 * 4 3 2 28 28 H 1.08002 * 120.11431 * 180.28475 * 5 4 3 29 29 H 1.08998 * 109.47428 * 205.01973 * 8 7 6 30 30 H 1.09001 * 109.46663 * 325.01770 * 8 7 6 31 31 H 1.09003 * 109.47337 * 300.00000 * 9 8 7 32 32 H 1.08998 * 109.47100 * 59.99965 * 9 8 7 33 33 H 1.08998 * 109.47136 * 300.00174 * 10 9 8 34 34 H 1.08998 * 109.47499 * 59.99805 * 10 9 8 35 35 H 0.97003 * 119.99985 * 179.97438 * 14 13 11 36 36 H 1.07996 * 125.02834 * 179.97438 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1919 0.0000 4 6 3.5861 1.2053 -0.0053 5 6 4.2916 0.0349 0.0008 6 6 3.6116 -1.1842 0.0009 7 6 4.0353 -2.5865 0.0018 8 6 5.4542 -3.0942 0.0019 9 6 5.9769 -3.1470 1.4388 10 6 7.4176 -3.6620 1.4388 11 6 7.9328 -3.7134 2.8540 12 1 7.2963 -3.4088 3.6718 13 6 9.2165 -4.1492 3.1051 14 7 9.9917 -4.5196 2.1093 15 14 9.8552 -4.2123 4.8593 16 1 9.0030 -5.1243 5.6639 17 1 11.2535 -4.7122 4.8593 18 1 9.8170 -2.8501 5.4494 19 6 2.9199 -3.3334 0.0020 20 7 1.8165 -2.5243 0.0018 21 1 0.8976 -2.8351 0.0015 22 6 2.2047 -1.2033 0.0010 23 1 -0.3633 0.0001 -1.0277 24 1 -0.3634 -0.8899 0.5138 25 1 -0.3633 0.8901 0.5138 26 1 1.6547 2.1251 -0.0004 27 1 4.1127 2.1482 -0.0101 28 1 5.3715 0.0531 0.0013 29 1 5.4825 -4.0937 -0.4320 30 1 6.0798 -2.4243 -0.5880 31 1 5.9487 -2.1475 1.8727 32 1 5.3513 -3.8169 2.0286 33 1 7.4463 -4.6614 1.0047 34 1 8.0431 -2.9918 0.8491 35 1 10.8950 -4.8259 2.2859 36 1 2.8970 -4.4131 0.0022 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259851825.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:13 Heat of formation + Delta-G solvation = 25.949416 kcal Electronic energy + Delta-G solvation = -16375.527049 eV Core-core repulsion = 13823.709821 eV Total energy + Delta-G solvation = -2551.817228 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.14361 -37.01505 -34.80226 -33.15645 -32.06144 -29.79377 -28.95339 -26.73632 -26.41220 -23.26022 -21.93073 -21.70045 -20.14009 -18.58578 -17.62355 -16.13366 -16.05841 -15.24442 -14.59817 -14.40855 -14.29683 -13.80666 -13.30900 -13.23848 -12.85105 -12.49419 -12.28474 -12.12300 -11.74950 -11.50843 -11.35034 -11.04952 -10.80826 -10.64445 -10.55207 -10.38051 -9.53510 -9.40403 -9.11041 -8.89824 -8.26940 -8.04909 -7.32677 -5.92516 -3.94208 1.25948 1.78530 2.90952 3.26997 3.38052 3.41909 3.45046 4.04123 4.52388 4.78501 4.88897 5.02784 5.16971 5.30494 5.42482 5.42653 5.42978 5.63911 5.67591 5.73838 5.95419 6.09200 6.11733 6.29783 6.32519 6.50551 6.63564 6.77290 6.83749 6.95248 7.07661 7.07967 7.27467 7.36098 7.68084 7.77579 7.94418 8.09319 8.52927 9.13148 9.69271 11.18783 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.035357 B = 0.004353 C = 0.004183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.742023 B = 6430.328317 C = 6692.736802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.107 4.107 3 C -0.104 4.104 4 C -0.151 4.151 5 C -0.065 4.065 6 C -0.099 4.099 7 C -0.145 4.145 8 C -0.049 4.049 9 C -0.101 4.101 10 C 0.020 3.980 11 C -0.518 4.518 12 H 0.053 0.947 13 C 0.056 3.944 14 N -0.897 5.897 15 Si 0.890 3.110 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.277 1.277 19 C 0.034 3.966 20 N -0.598 5.598 21 H 0.410 0.590 22 C 0.097 3.903 23 H 0.064 0.936 24 H 0.054 0.946 25 H 0.067 0.933 26 H 0.119 0.881 27 H 0.119 0.881 28 H 0.124 0.876 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.046 0.954 32 H 0.045 0.955 33 H 0.015 0.985 34 H 0.015 0.985 35 H 0.260 0.740 36 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.460 7.569 -6.324 20.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.110 4.110 3 C -0.123 4.123 4 C -0.171 4.171 5 C -0.084 4.084 6 C -0.104 4.104 7 C -0.151 4.151 8 C -0.087 4.087 9 C -0.139 4.139 10 C -0.017 4.017 11 C -0.556 4.556 12 H 0.071 0.929 13 C -0.145 4.145 14 N -0.537 5.537 15 Si 0.718 3.282 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.203 1.203 19 C -0.091 4.091 20 N -0.201 5.201 21 H 0.246 0.754 22 C -0.010 4.010 23 H 0.083 0.917 24 H 0.073 0.927 25 H 0.086 0.914 26 H 0.137 0.863 27 H 0.137 0.863 28 H 0.142 0.858 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.033 0.967 34 H 0.034 0.966 35 H 0.069 0.931 36 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -18.386 7.409 -6.362 20.818 hybrid contribution 0.016 -0.271 1.026 1.061 sum -18.370 7.138 -5.336 20.418 Atomic orbital electron populations 1.20646 0.91731 1.02267 1.01741 1.18787 0.94981 0.90348 1.06869 1.20629 0.94180 0.96090 1.01448 1.20568 0.93883 0.97815 1.04793 1.20380 0.99937 0.90541 0.97529 1.19166 0.91670 0.93571 1.05977 1.20636 0.95693 0.90545 1.08251 1.20120 0.89230 1.00003 0.99387 1.21597 0.99054 1.00344 0.92926 1.19124 0.89662 0.96171 0.96761 1.21260 0.98076 1.43132 0.93178 0.92860 1.25018 0.97029 0.95567 0.96862 1.69962 1.08221 1.44755 1.30753 0.86688 0.77795 0.78390 0.85301 1.20316 1.21330 1.20276 1.21609 0.85025 0.96187 1.06231 1.41633 1.08227 1.04009 1.66260 0.75367 1.18058 0.93771 0.84596 1.04569 0.91708 0.92652 0.91430 0.86253 0.86260 0.85814 0.91779 0.91720 0.93487 0.93662 0.96691 0.96639 0.93054 0.81492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.94 10.02 36.01 0.36 -0.58 16 2 C -0.11 -1.32 5.89 -104.47 -0.62 -1.94 16 3 C -0.10 -1.25 9.67 -39.54 -0.38 -1.63 16 4 C -0.15 -1.97 9.97 -39.95 -0.40 -2.37 16 5 C -0.07 -1.00 10.05 -39.65 -0.40 -1.40 16 6 C -0.10 -1.61 6.35 -105.14 -0.67 -2.28 16 7 C -0.14 -2.37 5.57 -102.71 -0.57 -2.94 16 8 C -0.05 -0.89 5.75 -27.88 -0.16 -1.05 16 9 C -0.10 -2.19 5.14 -26.73 -0.14 -2.33 16 10 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 11 C -0.52 -15.12 9.11 -34.44 -0.31 -15.43 16 12 H 0.05 1.52 7.74 -52.48 -0.41 1.11 16 13 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 14 N -0.90 -27.48 13.29 55.43 0.74 -26.74 16 15 Si 0.89 22.13 29.54 -169.99 -5.02 17.10 16 16 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 17 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 18 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 19 C 0.03 0.46 11.73 -16.73 -0.20 0.26 16 20 N -0.60 -7.24 6.07 -10.65 -0.06 -7.31 16 21 H 0.41 3.54 8.87 -40.82 -0.36 3.17 16 22 C 0.10 1.39 6.95 -83.99 -0.58 0.80 16 23 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 24 H 0.05 0.44 7.99 -51.93 -0.42 0.03 16 25 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 26 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 27 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 28 H 0.12 1.85 8.06 -52.49 -0.42 1.43 16 29 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 31 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 32 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 36 H 0.17 1.80 8.06 -52.49 -0.42 1.38 16 LS Contribution 307.07 15.07 4.63 4.63 Total: -1.00 -32.65 307.07 -9.41 -42.06 By element: Atomic # 1 Polarization: 4.60 SS G_CDS: -5.39 Total: -0.79 kcal Atomic # 6 Polarization: -24.65 SS G_CDS: -4.30 Total: -28.95 kcal Atomic # 7 Polarization: -34.72 SS G_CDS: 0.67 Total: -34.05 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -32.65 -9.41 -42.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259851825.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.008 kcal (2) G-P(sol) polarization free energy of solvation -32.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.059 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds