Wall clock time and date at job start Mon Mar 30 2020 06:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37791 * 120.11456 * 2 1 4 4 C 1.38785 * 120.66569 * 180.25618 * 3 2 1 5 5 C 1.36662 * 120.52759 * 359.43933 * 4 3 2 6 6 C 1.39592 * 119.76498 * 0.55200 * 5 4 3 7 7 C 1.46486 * 134.03345 * 179.75021 * 6 5 4 8 8 C 1.50702 * 126.50303 * 359.94650 * 7 6 5 9 9 C 1.52998 * 109.47183 * 85.01574 * 8 7 6 10 10 C 1.52998 * 109.47108 * 180.02562 * 9 8 7 11 11 C 1.50699 * 109.47370 * 179.97438 * 10 9 8 12 12 H 1.08004 * 119.99660 * 359.97438 * 11 10 9 13 13 C 1.37872 * 120.00643 * 179.97438 * 11 10 9 14 14 N 1.31521 * 119.99612 * 0.02562 * 13 11 10 15 15 Si 1.86794 * 120.00453 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.46961 * 60.00450 * 15 13 11 17 17 H 1.48497 * 109.47342 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.47496 * 300.00376 * 15 13 11 19 19 C 1.34236 * 106.99841 * 179.97438 * 7 6 5 20 20 N 1.36834 * 109.93838 * 359.97438 * 19 7 6 21 21 H 0.96999 * 125.06376 * 179.97438 * 20 19 7 22 22 C 1.37688 * 109.87351 * 0.02562 * 20 19 7 23 23 H 1.09003 * 109.46914 * 89.99357 * 1 2 3 24 24 H 1.08996 * 109.47631 * 209.99899 * 1 2 3 25 25 H 1.09006 * 109.47038 * 330.00455 * 1 2 3 26 26 H 1.08002 * 119.66240 * 359.97365 * 3 2 1 27 27 H 1.08002 * 119.73446 * 179.70213 * 4 3 2 28 28 H 1.08002 * 120.11431 * 180.28475 * 5 4 3 29 29 H 1.08998 * 109.47428 * 205.01973 * 8 7 6 30 30 H 1.09001 * 109.46663 * 325.01770 * 8 7 6 31 31 H 1.09003 * 109.47337 * 300.00000 * 9 8 7 32 32 H 1.08998 * 109.47100 * 59.99965 * 9 8 7 33 33 H 1.08998 * 109.47136 * 300.00174 * 10 9 8 34 34 H 1.08998 * 109.47499 * 59.99805 * 10 9 8 35 35 H 0.97003 * 119.99985 * 179.97438 * 14 13 11 36 36 H 1.07996 * 125.02834 * 179.97438 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1919 0.0000 4 6 3.5861 1.2053 -0.0053 5 6 4.2916 0.0349 0.0008 6 6 3.6116 -1.1842 0.0009 7 6 4.0353 -2.5865 0.0018 8 6 5.4542 -3.0942 0.0019 9 6 5.9769 -3.1470 1.4388 10 6 7.4176 -3.6620 1.4388 11 6 7.9328 -3.7134 2.8540 12 1 7.2963 -3.4088 3.6718 13 6 9.2165 -4.1492 3.1051 14 7 9.9917 -4.5196 2.1093 15 14 9.8552 -4.2123 4.8593 16 1 9.0030 -5.1243 5.6639 17 1 11.2535 -4.7122 4.8593 18 1 9.8170 -2.8501 5.4494 19 6 2.9199 -3.3334 0.0020 20 7 1.8165 -2.5243 0.0018 21 1 0.8976 -2.8351 0.0015 22 6 2.2047 -1.2033 0.0010 23 1 -0.3633 0.0001 -1.0277 24 1 -0.3634 -0.8899 0.5138 25 1 -0.3633 0.8901 0.5138 26 1 1.6547 2.1251 -0.0004 27 1 4.1127 2.1482 -0.0101 28 1 5.3715 0.0531 0.0013 29 1 5.4825 -4.0937 -0.4320 30 1 6.0798 -2.4243 -0.5880 31 1 5.9487 -2.1475 1.8727 32 1 5.3513 -3.8169 2.0286 33 1 7.4463 -4.6614 1.0047 34 1 8.0431 -2.9918 0.8491 35 1 10.8950 -4.8259 2.2859 36 1 2.8970 -4.4131 0.0022 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259851825.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:13 Heat of formation + Delta-G solvation = 8.258622 kcal Electronic energy + Delta-G solvation = -16376.294180 eV Core-core repulsion = 13823.709821 eV Total energy + Delta-G solvation = -2552.584358 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.18298 -38.02108 -36.52151 -34.72868 -33.58063 -31.22865 -30.09885 -28.13208 -27.58512 -25.15121 -22.92192 -22.71372 -22.04448 -19.81212 -18.68755 -18.28636 -17.12478 -16.52445 -16.27744 -15.58260 -15.56846 -15.12123 -14.56990 -14.27110 -14.17254 -13.79179 -13.70170 -13.48503 -13.16586 -12.93260 -12.60426 -12.49618 -12.39332 -12.32307 -12.17783 -11.76691 -11.36602 -11.28037 -11.16440 -10.53231 -10.19306 -9.08820 -8.41221 -8.17478 -6.29503 0.23182 0.74820 1.39430 1.43044 1.51042 1.79294 2.31202 2.42258 2.98927 3.14032 3.85537 3.91343 4.10878 4.20366 4.36827 4.37353 4.46736 4.64234 4.70112 4.76115 4.81828 4.86005 4.90165 5.04401 5.13287 5.21155 5.29311 5.30538 5.38785 5.55516 5.66911 5.73696 5.79279 5.84411 5.90054 5.94240 6.28560 6.31086 6.79456 6.86966 7.39275 8.93329 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.035357 B = 0.004353 C = 0.004183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.742023 B = 6430.328317 C = 6692.736802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.104 4.104 3 C -0.111 4.111 4 C -0.148 4.148 5 C -0.102 4.102 6 C -0.129 4.129 7 C -0.191 4.191 8 C -0.035 4.035 9 C -0.084 4.084 10 C 0.024 3.976 11 C -0.546 4.546 12 H 0.055 0.945 13 C 0.000 4.000 14 N -0.933 5.933 15 Si 0.964 3.036 16 H -0.266 1.266 17 H -0.280 1.280 18 H -0.269 1.269 19 C 0.058 3.942 20 N -0.583 5.583 21 H 0.429 0.571 22 C 0.081 3.919 23 H 0.078 0.922 24 H 0.064 0.936 25 H 0.083 0.917 26 H 0.152 0.848 27 H 0.138 0.862 28 H 0.108 0.892 29 H 0.071 0.929 30 H 0.051 0.949 31 H 0.034 0.966 32 H 0.047 0.953 33 H -0.004 1.004 34 H -0.011 1.011 35 H 0.264 0.736 36 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.937 7.972 -5.499 23.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.107 4.107 3 C -0.130 4.130 4 C -0.167 4.167 5 C -0.121 4.121 6 C -0.134 4.134 7 C -0.198 4.198 8 C -0.073 4.073 9 C -0.122 4.122 10 C -0.013 4.013 11 C -0.583 4.583 12 H 0.073 0.927 13 C -0.197 4.197 14 N -0.573 5.573 15 Si 0.788 3.212 16 H -0.191 1.191 17 H -0.205 1.205 18 H -0.194 1.194 19 C -0.068 4.068 20 N -0.187 5.187 21 H 0.269 0.731 22 C -0.026 4.026 23 H 0.097 0.903 24 H 0.083 0.917 25 H 0.102 0.898 26 H 0.169 0.831 27 H 0.156 0.844 28 H 0.126 0.874 29 H 0.090 0.910 30 H 0.070 0.930 31 H 0.053 0.947 32 H 0.066 0.934 33 H 0.014 0.986 34 H 0.007 0.993 35 H 0.073 0.927 36 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -20.907 7.822 -5.541 23.000 hybrid contribution 0.742 -0.361 0.720 1.095 sum -20.166 7.461 -4.821 22.036 Atomic orbital electron populations 1.20722 0.88870 1.03596 1.02995 1.19276 0.97074 0.89590 1.04765 1.21044 0.93763 0.97505 1.00702 1.20871 0.94849 0.97719 1.03245 1.20466 0.99592 0.91679 1.00372 1.19448 0.93254 0.93698 1.06953 1.20478 0.95259 0.91510 1.12541 1.19824 0.90733 1.00292 0.96463 1.21353 0.96020 0.99132 0.95683 1.19037 0.92357 0.94612 0.95319 1.21685 0.98828 1.43573 0.94259 0.92677 1.25976 0.97183 0.94810 1.01779 1.70095 1.08671 1.45278 1.33288 0.85518 0.77368 0.78881 0.79392 1.19083 1.20529 1.19380 1.21988 0.84539 0.97372 1.02934 1.41598 1.08923 1.03194 1.64974 0.73108 1.18302 0.93122 0.85941 1.05276 0.90329 0.91721 0.89797 0.83054 0.84395 0.87367 0.90997 0.93001 0.94669 0.93391 0.98561 0.99258 0.92732 0.78542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.46 10.02 71.24 0.71 -0.74 16 2 C -0.10 -2.32 5.89 -19.77 -0.12 -2.44 16 3 C -0.11 -2.42 9.67 22.29 0.22 -2.21 16 4 C -0.15 -3.78 9.97 22.03 0.22 -3.56 16 5 C -0.10 -3.27 10.05 22.23 0.22 -3.05 16 6 C -0.13 -4.26 6.35 -20.20 -0.13 -4.39 16 7 C -0.19 -6.31 5.57 -18.63 -0.10 -6.41 16 8 C -0.04 -1.32 5.75 29.85 0.17 -1.15 16 9 C -0.08 -3.78 5.14 30.59 0.16 -3.63 16 10 C 0.02 1.32 4.97 29.85 0.15 1.47 16 11 C -0.55 -32.61 9.11 25.60 0.23 -32.38 16 12 H 0.05 3.19 7.74 -2.91 -0.02 3.17 16 13 C 0.00 0.01 5.46 84.65 0.46 0.47 16 14 N -0.93 -58.34 13.29 21.45 0.28 -58.06 16 15 Si 0.96 45.57 29.54 68.60 2.03 47.60 16 16 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 17 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 18 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 19 C 0.06 1.47 11.73 83.00 0.97 2.45 16 20 N -0.58 -12.76 6.07 -187.61 -1.14 -13.90 16 21 H 0.43 6.00 8.87 -92.71 -0.82 5.18 16 22 C 0.08 2.19 6.95 39.03 0.27 2.46 16 23 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 24 H 0.06 0.79 7.99 -2.39 -0.02 0.77 16 25 H 0.08 0.92 8.09 -2.38 -0.02 0.90 16 26 H 0.15 2.26 8.06 -2.91 -0.02 2.24 16 27 H 0.14 2.85 8.06 -2.91 -0.02 2.82 16 28 H 0.11 3.59 8.06 -2.91 -0.02 3.57 16 29 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 30 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.03 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 34 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 35 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 36 H 0.20 3.69 8.06 -2.91 -0.02 3.66 16 Total: -1.00 -72.16 307.07 4.85 -67.31 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: 0.24 Total: 10.14 kcal Atomic # 6 Polarization: -56.54 SS G_CDS: 3.44 Total: -53.10 kcal Atomic # 7 Polarization: -71.10 SS G_CDS: -0.85 Total: -71.95 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Total: -72.16 4.85 -67.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259851825.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.570 kcal (2) G-P(sol) polarization free energy of solvation -72.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds