Wall clock time and date at job start Mon Mar 30 2020 05:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 120.00271 * 2 1 4 4 H 1.48500 * 109.47054 * 270.00106 * 3 2 1 5 5 H 1.48501 * 109.47238 * 30.00594 * 3 2 1 6 6 H 1.48499 * 109.47075 * 150.00296 * 3 2 1 7 7 C 1.37877 * 119.99374 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99518 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00305 * 359.97438 * 7 2 1 10 10 C 1.50707 * 109.47391 * 180.02562 * 9 7 2 11 11 C 1.38313 * 119.96082 * 270.27350 * 10 9 7 12 12 C 1.38260 * 120.14667 * 180.27026 * 11 10 9 13 13 C 1.38119 * 120.07760 * 359.45483 * 12 11 10 14 14 C 1.38891 * 119.92315 * 0.27212 * 13 12 11 15 15 N 1.39676 * 120.07271 * 180.02562 * 14 13 12 16 16 C 1.48555 * 111.00117 * 53.62382 * 15 14 13 17 17 C 1.54380 * 104.59436 * 200.95575 * 16 15 14 18 18 H 1.08990 * 117.60858 * 244.71690 * 17 16 15 19 19 C 1.53004 * 118.12250 * 89.19777 * 17 16 15 20 20 C 1.54261 * 105.05925 * 23.85501 * 17 16 15 21 21 H 1.08998 * 121.78898 * 222.12512 * 20 17 16 22 22 C 1.48561 * 110.99965 * 298.20093 * 15 14 13 23 23 C 1.38076 * 119.96405 * 89.99674 * 10 9 7 24 24 H 0.97008 * 119.99254 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47280 * 60.00202 * 9 7 2 26 26 H 1.09003 * 109.47507 * 300.00135 * 9 7 2 27 27 H 1.08000 * 119.92206 * 0.02562 * 11 10 9 28 28 H 1.08006 * 119.95574 * 179.72288 * 12 11 10 29 29 H 1.07994 * 120.04019 * 180.29160 * 13 12 11 30 30 H 1.08998 * 110.41542 * 319.73922 * 16 15 14 31 31 H 1.09005 * 110.41502 * 82.06531 * 16 15 14 32 32 H 1.08999 * 117.44543 * 15.97690 * 19 17 16 33 33 H 1.09000 * 117.44055 * 160.68787 * 19 17 16 34 34 H 1.08996 * 110.40960 * 277.82312 * 22 15 14 35 35 H 1.08998 * 110.40638 * 40.26680 * 22 15 14 36 36 H 1.08002 * 120.03929 * 359.97438 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4468 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.2301 -3.6447 -0.0005 11 6 2.6833 -4.1661 -1.1988 12 6 3.5773 -5.2207 -1.2033 13 6 4.0297 -5.7498 -0.0104 14 6 3.5810 -5.2250 1.1947 15 7 4.0368 -5.7573 2.4029 16 6 5.5215 -5.7750 2.4505 17 6 5.8637 -6.8317 3.5228 18 1 6.3655 -6.4890 4.4275 19 6 6.0242 -8.2863 3.0764 20 6 4.6327 -7.7597 3.5782 21 1 4.2267 -8.1192 4.5238 22 6 3.6502 -7.1857 2.5349 23 6 2.6783 -4.1689 1.1957 24 1 -0.4849 0.8402 0.0004 25 1 0.6239 -2.5567 -0.8903 26 1 0.6245 -2.5571 0.8897 27 1 2.3349 -3.7510 -2.1330 28 1 3.9257 -5.6283 -2.1409 29 1 4.7316 -6.5705 -0.0146 30 1 5.9294 -6.0688 1.4834 31 1 5.9042 -4.7970 2.7424 32 1 6.1549 -8.4733 2.0106 33 1 6.5671 -8.9586 3.7407 34 1 2.6240 -7.2703 2.8921 35 1 3.7653 -7.7002 1.5809 36 1 2.3278 -3.7581 2.1310 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259858269.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:39 Heat of formation + Delta-G solvation = 61.479549 kcal Electronic energy + Delta-G solvation = -16726.941721 eV Core-core repulsion = 14176.665196 eV Total energy + Delta-G solvation = -2550.276526 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.33402 -38.14679 -34.47273 -33.06636 -31.07292 -29.19048 -28.46051 -26.95491 -24.54164 -23.30390 -21.34734 -21.15623 -20.16827 -19.51370 -16.65947 -16.31244 -16.16646 -15.09349 -14.81610 -14.49472 -14.10119 -13.58367 -13.23478 -12.81618 -12.74287 -12.43425 -12.28218 -11.64164 -11.54658 -11.41299 -11.30700 -11.01846 -10.86138 -10.53986 -10.42689 -10.22385 -10.03144 -9.59571 -9.44182 -8.41628 -8.41043 -8.12787 -7.82126 -6.03581 -4.07200 1.87074 2.07218 3.31373 3.37512 3.40806 3.42462 4.01615 4.33174 4.39083 4.49990 4.62281 4.85385 5.06168 5.13118 5.31195 5.37863 5.44097 5.47932 5.52408 5.60495 5.84379 5.87540 5.92209 6.01871 6.04184 6.08781 6.24298 6.41398 6.69140 6.74351 6.96980 7.02394 7.18062 7.41858 7.54724 7.81940 7.87992 7.92553 8.32296 8.97800 9.56576 11.06444 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.034111 B = 0.005037 C = 0.004792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.646208 B = 5557.923076 C = 5842.239900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.895 3.105 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.511 4.511 8 H 0.057 0.943 9 C 0.048 3.952 10 C -0.028 4.028 11 C -0.124 4.124 12 C -0.115 4.115 13 C -0.178 4.178 14 C 0.066 3.934 15 N -0.471 5.471 16 C 0.062 3.938 17 C -0.160 4.160 18 H 0.115 0.885 19 C -0.155 4.155 20 C -0.166 4.166 21 H 0.119 0.881 22 C 0.065 3.935 23 C -0.093 4.093 24 H 0.262 0.738 25 H 0.030 0.970 26 H 0.030 0.970 27 H 0.119 0.881 28 H 0.111 0.889 29 H 0.106 0.894 30 H 0.051 0.949 31 H 0.087 0.913 32 H 0.091 0.909 33 H 0.101 0.899 34 H 0.087 0.913 35 H 0.050 0.950 36 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.670 -14.984 3.893 18.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.723 3.277 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.549 4.549 8 H 0.075 0.925 9 C 0.011 3.989 10 C -0.029 4.029 11 C -0.142 4.142 12 C -0.134 4.134 13 C -0.198 4.198 14 C -0.028 4.028 15 N -0.192 5.192 16 C -0.064 4.064 17 C -0.178 4.178 18 H 0.133 0.867 19 C -0.192 4.192 20 C -0.185 4.185 21 H 0.137 0.863 22 C -0.061 4.061 23 C -0.112 4.112 24 H 0.072 0.928 25 H 0.048 0.952 26 H 0.048 0.952 27 H 0.137 0.863 28 H 0.129 0.871 29 H 0.124 0.876 30 H 0.069 0.931 31 H 0.106 0.894 32 H 0.110 0.890 33 H 0.119 0.881 34 H 0.105 0.895 35 H 0.068 0.932 36 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 9.270 -14.510 4.332 17.755 hybrid contribution 0.851 0.512 -0.633 1.178 sum 10.121 -13.998 3.699 17.665 Atomic orbital electron populations 1.69963 1.06029 1.26809 1.50511 1.25003 0.94879 0.99236 0.95161 0.86535 0.79874 0.83159 0.78153 1.20603 1.21133 1.19793 1.21046 0.93039 0.89836 1.51005 0.92487 1.18370 0.92538 0.89528 0.98478 1.20680 0.95797 0.94816 0.91586 1.21143 0.98187 0.96427 0.98481 1.20878 0.98281 0.97305 0.96913 1.21231 1.03203 1.02015 0.93364 1.18869 0.98810 0.97385 0.87709 1.63195 1.08532 1.16045 1.31415 1.22748 0.87825 0.98962 0.96895 1.23427 1.02562 0.90516 1.01339 0.86703 1.23701 0.98110 0.95852 1.01536 1.24068 0.88688 1.04549 1.01181 0.86313 1.22685 0.99058 0.87212 0.97098 1.20918 0.96817 0.94797 0.98621 0.92842 0.95224 0.95175 0.86320 0.87104 0.87614 0.93088 0.89447 0.89041 0.88097 0.89463 0.93209 0.85763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.52 13.29 55.43 0.74 -25.78 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 21.69 29.54 -169.99 -5.02 16.67 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.51 -14.43 9.09 -34.44 -0.31 -14.74 16 8 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 9 C 0.05 1.24 5.10 -29.04 -0.15 1.09 16 10 C -0.03 -0.62 5.07 -104.65 -0.53 -1.15 16 11 C -0.12 -2.44 9.70 -39.55 -0.38 -2.82 16 12 C -0.12 -1.94 10.04 -39.62 -0.40 -2.33 16 13 C -0.18 -2.91 8.06 -39.38 -0.32 -3.23 16 14 C 0.07 1.17 4.90 -83.79 -0.41 0.76 16 15 N -0.47 -7.32 5.39 -166.71 -0.90 -8.22 16 16 C 0.06 0.83 6.13 -2.18 -0.01 0.82 16 17 C -0.16 -1.73 6.98 -89.23 -0.62 -2.35 16 18 H 0.11 1.12 8.14 -51.93 -0.42 0.70 16 19 C -0.15 -1.41 10.29 -24.55 -0.25 -1.66 16 20 C -0.17 -1.77 7.29 -87.06 -0.63 -2.41 16 21 H 0.12 1.12 8.14 -51.93 -0.42 0.70 16 22 C 0.07 0.85 6.20 -2.18 -0.01 0.84 16 23 C -0.09 -1.90 9.62 -39.38 -0.38 -2.28 16 24 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 25 H 0.03 0.80 8.09 -51.93 -0.42 0.38 16 26 H 0.03 0.82 8.08 -51.93 -0.42 0.40 16 27 H 0.12 2.25 8.06 -52.49 -0.42 1.83 16 28 H 0.11 1.55 8.06 -52.48 -0.42 1.12 16 29 H 0.11 1.50 6.73 -52.49 -0.35 1.14 16 30 H 0.05 0.67 6.37 -51.93 -0.33 0.34 16 31 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 35 H 0.05 0.64 6.90 -51.93 -0.36 0.28 16 36 H 0.12 2.61 8.06 -52.49 -0.42 2.19 16 LS Contribution 298.71 15.07 4.50 4.50 Total: -1.00 -29.69 298.71 -10.42 -40.11 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: -5.23 Total: 0.64 kcal Atomic # 6 Polarization: -23.40 SS G_CDS: -4.52 Total: -27.92 kcal Atomic # 7 Polarization: -33.84 SS G_CDS: -0.16 Total: -34.00 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -29.69 -10.42 -40.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259858269.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.589 kcal (2) G-P(sol) polarization free energy of solvation -29.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds