Wall clock time and date at job start Mon Mar 30 2020 05:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 120.00271 * 2 1 4 4 H 1.48500 * 109.47054 * 270.00106 * 3 2 1 5 5 H 1.48501 * 109.47238 * 30.00594 * 3 2 1 6 6 H 1.48499 * 109.47075 * 150.00296 * 3 2 1 7 7 C 1.37877 * 119.99374 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99518 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00305 * 359.97438 * 7 2 1 10 10 C 1.50707 * 109.47391 * 180.02562 * 9 7 2 11 11 C 1.38313 * 119.96082 * 270.27350 * 10 9 7 12 12 C 1.38260 * 120.14667 * 180.27026 * 11 10 9 13 13 C 1.38119 * 120.07760 * 359.45483 * 12 11 10 14 14 C 1.38891 * 119.92315 * 0.27212 * 13 12 11 15 15 N 1.39676 * 120.07271 * 180.02562 * 14 13 12 16 16 C 1.48555 * 111.00117 * 53.62382 * 15 14 13 17 17 C 1.54380 * 104.59436 * 200.95575 * 16 15 14 18 18 H 1.08990 * 117.60858 * 244.71690 * 17 16 15 19 19 C 1.53004 * 118.12250 * 89.19777 * 17 16 15 20 20 C 1.54261 * 105.05925 * 23.85501 * 17 16 15 21 21 H 1.08998 * 121.78898 * 222.12512 * 20 17 16 22 22 C 1.48561 * 110.99965 * 298.20093 * 15 14 13 23 23 C 1.38076 * 119.96405 * 89.99674 * 10 9 7 24 24 H 0.97008 * 119.99254 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47280 * 60.00202 * 9 7 2 26 26 H 1.09003 * 109.47507 * 300.00135 * 9 7 2 27 27 H 1.08000 * 119.92206 * 0.02562 * 11 10 9 28 28 H 1.08006 * 119.95574 * 179.72288 * 12 11 10 29 29 H 1.07994 * 120.04019 * 180.29160 * 13 12 11 30 30 H 1.08998 * 110.41542 * 319.73922 * 16 15 14 31 31 H 1.09005 * 110.41502 * 82.06531 * 16 15 14 32 32 H 1.08999 * 117.44543 * 15.97690 * 19 17 16 33 33 H 1.09000 * 117.44055 * 160.68787 * 19 17 16 34 34 H 1.08996 * 110.40960 * 277.82312 * 22 15 14 35 35 H 1.08998 * 110.40638 * 40.26680 * 22 15 14 36 36 H 1.08002 * 120.03929 * 359.97438 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4468 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.2301 -3.6447 -0.0005 11 6 2.6833 -4.1661 -1.1988 12 6 3.5773 -5.2207 -1.2033 13 6 4.0297 -5.7498 -0.0104 14 6 3.5810 -5.2250 1.1947 15 7 4.0368 -5.7573 2.4029 16 6 5.5215 -5.7750 2.4505 17 6 5.8637 -6.8317 3.5228 18 1 6.3655 -6.4890 4.4275 19 6 6.0242 -8.2863 3.0764 20 6 4.6327 -7.7597 3.5782 21 1 4.2267 -8.1192 4.5238 22 6 3.6502 -7.1857 2.5349 23 6 2.6783 -4.1689 1.1957 24 1 -0.4849 0.8402 0.0004 25 1 0.6239 -2.5567 -0.8903 26 1 0.6245 -2.5571 0.8897 27 1 2.3349 -3.7510 -2.1330 28 1 3.9257 -5.6283 -2.1409 29 1 4.7316 -6.5705 -0.0146 30 1 5.9294 -6.0688 1.4834 31 1 5.9042 -4.7970 2.7424 32 1 6.1549 -8.4733 2.0106 33 1 6.5671 -8.9586 3.7407 34 1 2.6240 -7.2703 2.8921 35 1 3.7653 -7.7002 1.5809 36 1 2.3278 -3.7581 2.1310 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259858269.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:38 Heat of formation + Delta-G solvation = 45.435355 kcal Electronic energy + Delta-G solvation = -16727.637450 eV Core-core repulsion = 14176.665196 eV Total energy + Delta-G solvation = -2550.972254 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.47792 -39.46575 -35.90513 -34.86242 -32.82607 -30.59074 -29.44901 -28.82058 -25.70583 -25.20196 -22.84061 -22.11215 -21.06300 -20.92366 -18.54464 -17.85671 -17.31934 -16.56513 -16.43886 -16.07323 -15.20119 -14.85916 -14.53502 -14.40255 -14.09601 -13.78746 -13.73043 -13.26629 -13.09859 -12.73028 -12.64754 -12.52355 -12.37093 -12.34511 -11.98869 -11.55327 -11.44512 -11.07033 -10.87167 -10.62194 -9.65470 -9.53198 -9.38244 -8.22175 -6.35460 0.40911 0.57480 1.38389 1.39818 1.51370 2.38133 2.59378 2.89128 2.94673 3.09009 3.50826 3.73452 4.01145 4.06331 4.10064 4.15942 4.27121 4.35116 4.52088 4.53928 4.59810 4.76158 4.82019 4.85146 4.87136 5.01377 5.15470 5.19261 5.28339 5.30897 5.35923 5.52614 5.54822 5.68400 5.71919 5.90645 6.05399 6.16524 6.48622 6.76614 7.33080 8.87623 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.034111 B = 0.005037 C = 0.004792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.646208 B = 5557.923076 C = 5842.239900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.005 3.995 3 Si 0.966 3.034 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.268 1.268 7 C -0.530 4.530 8 H 0.052 0.948 9 C 0.057 3.943 10 C -0.055 4.055 11 C -0.138 4.138 12 C -0.101 4.101 13 C -0.166 4.166 14 C 0.076 3.924 15 N -0.494 5.494 16 C 0.059 3.941 17 C -0.166 4.166 18 H 0.125 0.875 19 C -0.129 4.129 20 C -0.172 4.172 21 H 0.131 0.869 22 C 0.063 3.937 23 C -0.115 4.115 24 H 0.266 0.734 25 H 0.007 0.993 26 H 0.000 1.000 27 H 0.118 0.882 28 H 0.151 0.849 29 H 0.140 0.860 30 H 0.057 0.943 31 H 0.075 0.925 32 H 0.096 0.904 33 H 0.126 0.874 34 H 0.079 0.921 35 H 0.055 0.945 36 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.399 -16.717 3.747 21.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.193 4.193 3 Si 0.790 3.210 4 H -0.194 1.194 5 H -0.203 1.203 6 H -0.192 1.192 7 C -0.567 4.567 8 H 0.071 0.929 9 C 0.020 3.980 10 C -0.056 4.056 11 C -0.156 4.156 12 C -0.119 4.119 13 C -0.186 4.186 14 C -0.018 4.018 15 N -0.215 5.215 16 C -0.067 4.067 17 C -0.185 4.185 18 H 0.143 0.857 19 C -0.166 4.166 20 C -0.191 4.191 21 H 0.149 0.851 22 C -0.063 4.063 23 C -0.134 4.134 24 H 0.075 0.925 25 H 0.026 0.974 26 H 0.018 0.982 27 H 0.136 0.864 28 H 0.169 0.831 29 H 0.158 0.842 30 H 0.075 0.925 31 H 0.094 0.906 32 H 0.115 0.885 33 H 0.144 0.856 34 H 0.098 0.902 35 H 0.073 0.927 36 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 12.005 -16.260 4.188 20.642 hybrid contribution 0.012 0.956 -0.551 1.103 sum 12.017 -15.305 3.638 19.796 Atomic orbital electron populations 1.70086 1.07670 1.28003 1.51191 1.25929 0.95785 1.03113 0.94465 0.85428 0.78514 0.78327 0.78692 1.19388 1.20344 1.19233 1.21344 0.92988 0.91240 1.51163 0.92928 1.18103 0.92880 0.91174 0.95848 1.20344 0.96768 0.94965 0.93510 1.21200 0.99342 0.97738 0.97316 1.21233 0.96310 0.95490 0.98870 1.21584 1.02602 1.02013 0.92359 1.18921 0.97309 0.96028 0.89500 1.63159 1.10180 1.17868 1.30317 1.22779 0.86211 0.99532 0.98209 1.23429 1.03193 0.90792 1.01109 0.85688 1.23829 0.96027 0.94365 1.02400 1.24089 0.88582 1.05253 1.01183 0.85117 1.22716 0.99546 0.85763 0.98243 1.20793 0.98725 0.96640 0.97209 0.92497 0.97445 0.98158 0.86367 0.83128 0.84218 0.92480 0.90621 0.88537 0.85620 0.90207 0.92669 0.87876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.02 13.29 21.45 0.28 -56.73 16 2 C 0.01 0.31 5.46 84.65 0.46 0.77 16 3 Si 0.97 45.14 29.54 68.60 2.03 47.17 16 4 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 5 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 6 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 7 C -0.53 -31.18 9.09 25.60 0.23 -30.94 16 8 H 0.05 3.06 7.74 -2.91 -0.02 3.04 16 9 C 0.06 3.16 5.10 29.10 0.15 3.31 16 10 C -0.06 -2.56 5.07 -19.88 -0.10 -2.66 16 11 C -0.14 -5.43 9.70 22.29 0.22 -5.22 16 12 C -0.10 -3.13 10.04 22.25 0.22 -2.90 16 13 C -0.17 -4.97 8.06 22.40 0.18 -4.79 16 14 C 0.08 2.66 4.90 38.21 0.19 2.85 16 15 N -0.49 -14.91 5.39 -681.35 -3.67 -18.58 16 16 C 0.06 1.46 6.13 86.45 0.53 1.99 16 17 C -0.17 -3.12 6.98 -9.90 -0.07 -3.19 16 18 H 0.13 2.09 8.14 -2.39 -0.02 2.07 16 19 C -0.13 -1.79 10.29 32.00 0.33 -1.47 16 20 C -0.17 -3.18 7.29 -8.49 -0.06 -3.25 16 21 H 0.13 2.10 8.14 -2.39 -0.02 2.08 16 22 C 0.06 1.52 6.20 86.45 0.54 2.06 16 23 C -0.11 -4.92 9.62 22.40 0.22 -4.71 16 24 H 0.27 15.24 8.31 -92.70 -0.77 14.47 16 25 H 0.01 0.42 8.09 -2.39 -0.02 0.40 16 26 H 0.00 0.01 8.08 -2.39 -0.02 -0.01 16 27 H 0.12 4.56 8.06 -2.91 -0.02 4.53 16 28 H 0.15 3.51 8.06 -2.91 -0.02 3.49 16 29 H 0.14 3.29 6.73 -2.91 -0.02 3.27 16 30 H 0.06 1.33 6.37 -2.39 -0.02 1.31 16 31 H 0.08 2.02 8.14 -2.38 -0.02 2.00 16 32 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.13 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.06 1.26 6.90 -2.39 -0.02 1.25 16 36 H 0.10 4.71 8.06 -2.91 -0.02 4.69 16 Total: -1.00 -66.62 298.71 2.72 -63.90 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: 1.05 Total: 12.38 kcal Atomic # 6 Polarization: -51.17 SS G_CDS: 3.03 Total: -48.14 kcal Atomic # 7 Polarization: -71.92 SS G_CDS: -3.39 Total: -75.31 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Total: -66.62 2.72 -63.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259858269.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.334 kcal (2) G-P(sol) polarization free energy of solvation -66.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds