Wall clock time and date at job start Mon Mar 30 2020 05:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38836 * 119.73795 * 2 1 4 4 C 1.37752 * 120.66743 * 180.02562 * 3 2 1 5 5 C 1.39125 * 119.78204 * 0.02562 * 4 3 2 6 6 N 1.37677 * 133.51372 * 179.97438 * 5 4 3 7 7 H 0.97008 * 125.06489 * 359.97438 * 6 5 4 8 8 C 1.36831 * 109.88036 * 179.97438 * 6 5 4 9 9 C 1.34245 * 109.92303 * 0.02562 * 8 6 5 10 10 C 1.50700 * 126.49792 * 180.26496 * 9 8 6 11 11 C 1.53004 * 109.46852 * 264.68630 * 10 9 8 12 12 H 1.09001 * 109.47119 * 55.00075 * 11 10 9 13 13 C 1.53000 * 109.47187 * 294.99789 * 11 10 9 14 14 C 1.50705 * 109.47090 * 175.00005 * 11 10 9 15 15 H 1.08001 * 119.99612 * 0.02562 * 14 11 10 16 16 C 1.37872 * 119.99929 * 179.97438 * 14 11 10 17 17 N 1.31510 * 120.00149 * 0.02562 * 16 14 11 18 18 Si 1.86802 * 119.99764 * 179.97438 * 16 14 11 19 19 H 1.48499 * 109.47088 * 0.02562 * 18 16 14 20 20 H 1.48507 * 109.46759 * 120.00287 * 18 16 14 21 21 H 1.48495 * 109.47219 * 239.99871 * 18 16 14 22 22 C 1.40667 * 119.32715 * 359.97438 * 5 4 3 23 23 C 1.36624 * 119.73737 * 180.02562 * 2 1 3 24 24 H 1.08998 * 109.46923 * 90.00035 * 1 2 3 25 25 H 1.08998 * 109.47074 * 209.99209 * 1 2 3 26 26 H 1.08995 * 109.46849 * 329.99657 * 1 2 3 27 27 H 1.07993 * 119.66329 * 0.05195 * 3 2 1 28 28 H 1.07993 * 120.10359 * 179.97438 * 4 3 2 29 29 H 1.07993 * 125.04143 * 180.02562 * 8 6 5 30 30 H 1.08999 * 109.47239 * 24.68756 * 10 9 8 31 31 H 1.09001 * 109.47006 * 144.68679 * 10 9 8 32 32 H 1.09010 * 109.46717 * 60.00036 * 13 11 10 33 33 H 1.08998 * 109.46905 * 179.97438 * 13 11 10 34 34 H 1.08994 * 109.47296 * 300.00527 * 13 11 10 35 35 H 0.96999 * 120.00124 * 179.97438 * 17 16 14 36 36 H 1.08003 * 120.11790 * 359.97233 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.2055 0.0000 4 6 3.5730 1.2279 -0.0005 5 6 4.2835 0.0317 -0.0016 6 7 5.6261 -0.2733 -0.0028 7 1 6.3455 0.3774 -0.0034 8 6 5.7947 -1.6312 -0.0029 9 6 4.5986 -2.2407 -0.0025 10 6 4.3499 -3.7270 0.0032 11 6 4.1364 -4.2138 -1.4316 12 1 4.9866 -3.9177 -2.0461 13 6 2.8578 -3.5916 -1.9963 14 6 4.0101 -5.7155 -1.4390 15 1 4.0751 -6.2674 -0.5130 16 6 3.8104 -6.3846 -2.6279 17 7 3.7307 -5.7125 -3.7554 18 14 3.6545 -8.2461 -2.6371 19 1 3.7793 -8.7602 -1.2495 20 1 2.3302 -8.6291 -3.1893 21 1 4.7295 -8.8287 -3.4799 22 6 3.5810 -1.1869 -0.0016 23 6 2.1847 -1.1863 -0.0005 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5137 26 1 -0.3633 0.8899 0.5139 27 1 1.6460 2.1351 0.0009 28 1 4.0994 2.1708 -0.0009 29 1 6.7485 -2.1376 -0.0034 30 1 5.2102 -4.2377 0.4359 31 1 3.4619 -3.9446 0.5966 32 1 2.9492 -2.5054 -1.9909 33 1 2.7059 -3.9381 -3.0185 34 1 2.0076 -3.8877 -1.3818 35 1 3.5906 -6.1832 -4.5918 36 1 1.6423 -2.1203 -0.0005 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259865272.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:34 Heat of formation + Delta-G solvation = 35.017693 kcal Electronic energy + Delta-G solvation = -17061.878082 eV Core-core repulsion = 14510.454084 eV Total energy + Delta-G solvation = -2551.423998 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.86199 -37.03773 -35.05885 -32.28191 -31.25456 -30.20900 -28.60832 -26.05814 -25.15594 -24.77063 -22.28911 -20.87916 -20.01826 -18.23446 -17.35823 -16.07235 -15.82493 -14.78493 -14.54806 -14.12746 -13.81929 -13.50338 -13.13269 -12.92688 -12.79267 -12.34553 -12.02410 -11.84004 -11.25489 -11.20517 -10.91645 -10.87504 -10.74856 -10.62817 -10.29996 -9.93695 -9.56083 -9.47128 -8.89823 -8.60754 -8.23191 -7.69606 -7.07008 -5.87893 -3.94899 1.52631 1.96702 3.21946 3.34411 3.42389 3.46357 3.52628 4.26503 4.51413 5.04003 5.19242 5.27562 5.41919 5.42619 5.60879 5.77026 5.79618 5.86541 6.04875 6.07396 6.25653 6.36884 6.45191 6.62446 6.77133 6.88029 6.94945 7.05888 7.13129 7.23698 7.34570 7.42428 7.57464 7.63961 7.84715 7.94397 8.14517 8.32094 8.57965 9.10225 9.69468 11.17191 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.029236 B = 0.006158 C = 0.005426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.497414 B = 4546.067147 C = 5159.422007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.130 4.130 3 C -0.102 4.102 4 C -0.138 4.138 5 C 0.089 3.911 6 N -0.602 5.602 7 H 0.409 0.591 8 C 0.023 3.977 9 C -0.130 4.130 10 C -0.042 4.042 11 C 0.051 3.949 12 H 0.023 0.977 13 C -0.133 4.133 14 C -0.511 4.511 15 H 0.054 0.946 16 C 0.060 3.940 17 N -0.890 5.890 18 Si 0.887 3.113 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.286 1.286 22 C -0.092 4.092 23 C -0.054 4.054 24 H 0.063 0.937 25 H 0.062 0.938 26 H 0.058 0.942 27 H 0.117 0.883 28 H 0.112 0.888 29 H 0.165 0.835 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.015 0.985 33 H 0.074 0.926 34 H 0.019 0.981 35 H 0.257 0.743 36 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.469 12.827 7.495 14.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.131 4.131 3 C -0.121 4.121 4 C -0.158 4.158 5 C -0.019 4.019 6 N -0.205 5.205 7 H 0.244 0.756 8 C -0.100 4.100 9 C -0.137 4.137 10 C -0.080 4.080 11 C 0.032 3.968 12 H 0.041 0.959 13 C -0.191 4.191 14 C -0.549 4.549 15 H 0.073 0.927 16 C -0.141 4.141 17 N -0.529 5.529 18 Si 0.715 3.285 19 H -0.198 1.198 20 H -0.212 1.212 21 H -0.212 1.212 22 C -0.097 4.097 23 C -0.072 4.072 24 H 0.082 0.918 25 H 0.081 0.919 26 H 0.077 0.923 27 H 0.135 0.865 28 H 0.130 0.870 29 H 0.182 0.818 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.034 0.966 33 H 0.093 0.907 34 H 0.039 0.961 35 H 0.067 0.933 36 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -0.368 12.831 7.308 14.771 hybrid contribution 0.374 -0.699 -0.242 0.828 sum 0.005 12.132 7.066 14.040 Atomic orbital electron populations 1.20669 0.91649 1.01980 1.01847 1.19299 0.95710 0.92854 1.05238 1.20555 0.92839 0.97179 1.01525 1.19861 0.93743 0.94447 1.07790 1.18265 0.83780 0.95299 1.04532 1.41616 1.05263 1.06868 1.66751 0.75575 1.21568 0.99464 0.81685 1.07316 1.20789 0.90444 0.95998 1.06443 1.20233 1.00202 0.86760 1.00819 1.18623 0.94769 0.94291 0.89078 0.95932 1.21833 0.98045 0.96127 1.03106 1.21297 1.48823 0.91811 0.93015 0.92749 1.24961 0.95473 0.97888 0.95745 1.69924 1.50335 1.34788 0.97880 0.86617 0.77536 0.86338 0.77967 1.19828 1.21155 1.21187 1.19136 0.93119 0.91999 1.05454 1.20293 0.92113 0.97674 0.97128 0.91776 0.91905 0.92323 0.86478 0.86975 0.81762 0.92704 0.92664 0.96557 0.90692 0.96148 0.93284 0.85844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.27 9.99 36.01 0.36 -0.91 16 2 C -0.13 -1.96 5.85 -104.98 -0.61 -2.57 16 3 C -0.10 -1.41 9.66 -39.54 -0.38 -1.79 16 4 C -0.14 -1.95 10.08 -39.43 -0.40 -2.35 16 5 C 0.09 1.45 7.28 -83.99 -0.61 0.84 16 6 N -0.60 -8.65 6.07 -10.65 -0.06 -8.72 16 7 H 0.41 4.30 8.96 -40.82 -0.37 3.93 16 8 C 0.02 0.38 11.73 -16.73 -0.20 0.18 16 9 C -0.13 -2.51 5.07 -102.71 -0.52 -3.03 16 10 C -0.04 -0.90 5.16 -27.88 -0.14 -1.04 16 11 C 0.05 1.30 2.29 -91.77 -0.21 1.09 16 12 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 13 C -0.13 -3.36 8.00 37.16 0.30 -3.06 16 14 C -0.51 -14.22 8.56 -34.44 -0.29 -14.51 16 15 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 16 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 17 N -0.89 -26.12 11.32 55.43 0.63 -25.50 16 18 Si 0.89 21.55 29.54 -169.99 -5.02 16.52 16 19 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 22 C -0.09 -1.72 5.25 -105.14 -0.55 -2.27 16 23 C -0.05 -0.95 8.31 -39.64 -0.33 -1.28 16 24 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.06 0.73 8.07 -51.93 -0.42 0.31 16 26 H 0.06 0.59 8.08 -51.93 -0.42 0.17 16 27 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 28 H 0.11 1.27 8.06 -52.49 -0.42 0.85 16 29 H 0.17 2.24 8.06 -52.49 -0.42 1.82 16 30 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 31 H 0.05 1.18 8.14 -51.93 -0.42 0.75 16 32 H 0.02 0.37 5.48 -51.92 -0.28 0.09 16 33 H 0.07 2.10 6.07 -51.93 -0.32 1.78 16 34 H 0.02 0.48 7.76 -51.93 -0.40 0.08 16 35 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 36 H 0.12 2.22 7.32 -52.48 -0.38 1.84 16 LS Contribution 295.31 15.07 4.45 4.45 Total: -1.00 -31.03 295.31 -8.79 -39.82 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -5.09 Total: 2.52 kcal Atomic # 6 Polarization: -25.42 SS G_CDS: -3.69 Total: -29.11 kcal Atomic # 7 Polarization: -34.77 SS G_CDS: 0.56 Total: -34.21 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -31.03 -8.79 -39.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259865272.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.842 kcal (2) G-P(sol) polarization free energy of solvation -31.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds