Wall clock time and date at job start Mon Mar 30 2020 05:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38836 * 119.73795 * 2 1 4 4 C 1.37752 * 120.66743 * 180.02562 * 3 2 1 5 5 C 1.39125 * 119.78204 * 0.02562 * 4 3 2 6 6 N 1.37677 * 133.51372 * 179.97438 * 5 4 3 7 7 H 0.97008 * 125.06489 * 359.97438 * 6 5 4 8 8 C 1.36831 * 109.88036 * 179.97438 * 6 5 4 9 9 C 1.34245 * 109.92303 * 0.02562 * 8 6 5 10 10 C 1.50700 * 126.49792 * 180.26496 * 9 8 6 11 11 C 1.53004 * 109.46852 * 264.68630 * 10 9 8 12 12 H 1.09001 * 109.47119 * 55.00075 * 11 10 9 13 13 C 1.53000 * 109.47187 * 294.99789 * 11 10 9 14 14 C 1.50705 * 109.47090 * 175.00005 * 11 10 9 15 15 H 1.08001 * 119.99612 * 0.02562 * 14 11 10 16 16 C 1.37872 * 119.99929 * 179.97438 * 14 11 10 17 17 N 1.31510 * 120.00149 * 0.02562 * 16 14 11 18 18 Si 1.86802 * 119.99764 * 179.97438 * 16 14 11 19 19 H 1.48499 * 109.47088 * 0.02562 * 18 16 14 20 20 H 1.48507 * 109.46759 * 120.00287 * 18 16 14 21 21 H 1.48495 * 109.47219 * 239.99871 * 18 16 14 22 22 C 1.40667 * 119.32715 * 359.97438 * 5 4 3 23 23 C 1.36624 * 119.73737 * 180.02562 * 2 1 3 24 24 H 1.08998 * 109.46923 * 90.00035 * 1 2 3 25 25 H 1.08998 * 109.47074 * 209.99209 * 1 2 3 26 26 H 1.08995 * 109.46849 * 329.99657 * 1 2 3 27 27 H 1.07993 * 119.66329 * 0.05195 * 3 2 1 28 28 H 1.07993 * 120.10359 * 179.97438 * 4 3 2 29 29 H 1.07993 * 125.04143 * 180.02562 * 8 6 5 30 30 H 1.08999 * 109.47239 * 24.68756 * 10 9 8 31 31 H 1.09001 * 109.47006 * 144.68679 * 10 9 8 32 32 H 1.09010 * 109.46717 * 60.00036 * 13 11 10 33 33 H 1.08998 * 109.46905 * 179.97438 * 13 11 10 34 34 H 1.08994 * 109.47296 * 300.00527 * 13 11 10 35 35 H 0.96999 * 120.00124 * 179.97438 * 17 16 14 36 36 H 1.08003 * 120.11790 * 359.97233 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.2055 0.0000 4 6 3.5730 1.2279 -0.0005 5 6 4.2835 0.0317 -0.0016 6 7 5.6261 -0.2733 -0.0028 7 1 6.3455 0.3774 -0.0034 8 6 5.7947 -1.6312 -0.0029 9 6 4.5986 -2.2407 -0.0025 10 6 4.3499 -3.7270 0.0032 11 6 4.1364 -4.2138 -1.4316 12 1 4.9866 -3.9177 -2.0461 13 6 2.8578 -3.5916 -1.9963 14 6 4.0101 -5.7155 -1.4390 15 1 4.0751 -6.2674 -0.5130 16 6 3.8104 -6.3846 -2.6279 17 7 3.7307 -5.7125 -3.7554 18 14 3.6545 -8.2461 -2.6371 19 1 3.7793 -8.7602 -1.2495 20 1 2.3302 -8.6291 -3.1893 21 1 4.7295 -8.8287 -3.4799 22 6 3.5810 -1.1869 -0.0016 23 6 2.1847 -1.1863 -0.0005 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5137 26 1 -0.3633 0.8899 0.5139 27 1 1.6460 2.1351 0.0009 28 1 4.0994 2.1708 -0.0009 29 1 6.7485 -2.1376 -0.0034 30 1 5.2102 -4.2377 0.4359 31 1 3.4619 -3.9446 0.5966 32 1 2.9492 -2.5054 -1.9909 33 1 2.7059 -3.9381 -3.0185 34 1 2.0076 -3.8877 -1.3818 35 1 3.5906 -6.1832 -4.5918 36 1 1.6423 -2.1203 -0.0005 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259865272.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:34 Heat of formation + Delta-G solvation = 18.406869 kcal Electronic energy + Delta-G solvation = -17062.598381 eV Core-core repulsion = 14510.454084 eV Total energy + Delta-G solvation = -2552.144297 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.09571 -38.20667 -36.95368 -34.07636 -32.47657 -31.68844 -30.07773 -27.29358 -27.10188 -26.53111 -23.46066 -22.31127 -21.61761 -19.69386 -18.71223 -18.14778 -17.00849 -16.57483 -15.93660 -15.47248 -14.98959 -14.93284 -14.69947 -14.41836 -14.13089 -14.02656 -13.42724 -13.10730 -12.86364 -12.85295 -12.73947 -12.44808 -12.28265 -12.16382 -11.93665 -11.63727 -11.41893 -11.34489 -10.74556 -10.40279 -10.23633 -8.89799 -8.37782 -8.02020 -6.18882 0.32018 0.77515 1.41666 1.43085 1.55022 1.89941 2.38470 2.46723 3.04537 3.22639 3.89897 4.04932 4.17109 4.32385 4.47707 4.54893 4.64072 4.73477 4.90319 4.92203 4.93533 4.99818 5.07388 5.12667 5.24242 5.26525 5.35882 5.40027 5.53462 5.63736 5.66822 5.86419 5.94710 5.96823 6.08941 6.19782 6.37009 6.44213 6.87505 6.95011 7.49452 9.00572 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.029236 B = 0.006158 C = 0.005426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.497414 B = 4546.067147 C = 5159.422007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.128 4.128 3 C -0.104 4.104 4 C -0.130 4.130 5 C 0.073 3.927 6 N -0.585 5.585 7 H 0.429 0.571 8 C 0.044 3.956 9 C -0.181 4.181 10 C -0.026 4.026 11 C 0.051 3.949 12 H -0.009 1.009 13 C -0.113 4.113 14 C -0.531 4.531 15 H 0.054 0.946 16 C 0.009 3.991 17 N -0.921 5.921 18 Si 0.954 3.046 19 H -0.265 1.265 20 H -0.282 1.282 21 H -0.280 1.280 22 C -0.121 4.121 23 C -0.090 4.090 24 H 0.067 0.933 25 H 0.059 0.941 26 H 0.085 0.915 27 H 0.154 0.846 28 H 0.148 0.852 29 H 0.191 0.809 30 H 0.058 0.942 31 H 0.045 0.955 32 H 0.025 0.975 33 H 0.043 0.957 34 H 0.018 0.982 35 H 0.259 0.741 36 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.240 14.517 8.253 16.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.129 4.129 3 C -0.123 4.123 4 C -0.151 4.151 5 C -0.035 4.035 6 N -0.190 5.190 7 H 0.269 0.731 8 C -0.082 4.082 9 C -0.188 4.188 10 C -0.064 4.064 11 C 0.033 3.967 12 H 0.009 0.991 13 C -0.171 4.171 14 C -0.569 4.569 15 H 0.073 0.927 16 C -0.189 4.189 17 N -0.561 5.561 18 Si 0.780 3.220 19 H -0.189 1.189 20 H -0.208 1.208 21 H -0.206 1.206 22 C -0.126 4.126 23 C -0.108 4.108 24 H 0.086 0.914 25 H 0.078 0.922 26 H 0.104 0.896 27 H 0.172 0.828 28 H 0.166 0.834 29 H 0.207 0.793 30 H 0.077 0.923 31 H 0.063 0.937 32 H 0.044 0.956 33 H 0.062 0.938 34 H 0.037 0.963 35 H 0.068 0.932 36 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -0.128 14.553 8.080 16.646 hybrid contribution 0.297 -1.124 -0.467 1.253 sum 0.169 13.429 7.613 15.438 Atomic orbital electron populations 1.20731 0.89740 1.03221 1.02431 1.19696 0.97285 0.92564 1.03332 1.21010 0.93082 0.97937 1.00255 1.20318 0.94070 0.94972 1.05699 1.18547 0.84352 0.95376 1.05204 1.41556 1.05421 1.06569 1.65435 0.73120 1.21886 0.99481 0.82535 1.04274 1.20651 0.92380 0.94932 1.10854 1.19874 0.99871 0.88993 0.97637 1.18555 0.93352 0.93499 0.91325 0.99112 1.21585 0.98001 0.96562 1.00906 1.21669 1.48811 0.93228 0.93165 0.92745 1.25779 0.95098 1.02658 0.95359 1.70069 1.50991 1.36612 0.98416 0.85561 0.77535 0.80587 0.78303 1.18926 1.20798 1.20600 1.19362 0.93674 0.92951 1.06592 1.20322 0.92229 0.98100 1.00191 0.91399 0.92203 0.89602 0.82842 0.83436 0.79259 0.92294 0.93658 0.95589 0.93763 0.96306 0.93229 0.87900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.36 9.99 71.24 0.71 -1.65 16 2 C -0.13 -3.70 5.85 -20.10 -0.12 -3.82 16 3 C -0.10 -2.54 9.66 22.30 0.22 -2.33 16 4 C -0.13 -3.27 10.08 22.37 0.23 -3.04 16 5 C 0.07 2.26 7.28 39.03 0.28 2.54 16 6 N -0.58 -15.55 6.07 -187.62 -1.14 -16.69 16 7 H 0.43 7.68 8.96 -92.70 -0.83 6.85 16 8 C 0.04 1.39 11.73 83.00 0.97 2.36 16 9 C -0.18 -7.10 5.07 -18.63 -0.09 -7.20 16 10 C -0.03 -1.14 5.16 29.85 0.15 -0.98 16 11 C 0.05 2.73 2.29 -11.54 -0.03 2.70 16 12 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 13 C -0.11 -5.95 8.00 71.98 0.58 -5.38 16 14 C -0.53 -30.30 8.56 25.60 0.22 -30.08 16 15 H 0.05 3.03 7.74 -2.91 -0.02 3.00 16 16 C 0.01 0.51 5.30 84.65 0.45 0.96 16 17 N -0.92 -55.48 11.32 21.44 0.24 -55.24 16 18 Si 0.95 44.74 29.54 68.60 2.03 46.76 16 19 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 20 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 21 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 22 C -0.12 -4.55 5.25 -20.20 -0.11 -4.66 16 23 C -0.09 -3.25 8.31 22.23 0.18 -3.06 16 24 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 25 H 0.06 1.37 8.07 -2.39 -0.02 1.35 16 26 H 0.09 1.46 8.08 -2.39 -0.02 1.44 16 27 H 0.15 2.61 8.06 -2.91 -0.02 2.59 16 28 H 0.15 2.62 8.06 -2.91 -0.02 2.59 16 29 H 0.19 4.83 8.06 -2.91 -0.02 4.80 16 30 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 31 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 32 H 0.03 1.27 5.48 -2.38 -0.01 1.26 16 33 H 0.04 2.58 6.07 -2.39 -0.01 2.56 16 34 H 0.02 0.93 7.76 -2.39 -0.02 0.91 16 35 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 36 H 0.10 3.97 7.32 -2.91 -0.02 3.95 16 Total: -1.00 -68.80 295.31 5.02 -63.78 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: 0.24 Total: 15.01 kcal Atomic # 6 Polarization: -57.27 SS G_CDS: 3.65 Total: -53.63 kcal Atomic # 7 Polarization: -71.03 SS G_CDS: -0.90 Total: -71.93 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.76 kcal Total: -68.80 5.02 -63.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259865272.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.190 kcal (2) G-P(sol) polarization free energy of solvation -68.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds