Wall clock time and date at job start Mon Mar 30 2020 05:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38833 * 119.73233 * 2 1 4 4 C 1.37753 * 120.66713 * 179.97438 * 3 2 1 5 5 C 1.39126 * 119.77899 * 359.97438 * 4 3 2 6 6 N 1.37683 * 133.51239 * 180.02562 * 5 4 3 7 7 H 0.97006 * 125.05748 * 359.96378 * 6 5 4 8 8 C 1.36824 * 109.87508 * 179.72079 * 6 5 4 9 9 C 1.34237 * 109.93014 * 0.40706 * 8 6 5 10 10 C 1.50705 * 126.50508 * 179.86275 * 9 8 6 11 11 C 1.52997 * 109.47390 * 264.69493 * 10 9 8 12 12 H 1.09002 * 109.47153 * 304.99634 * 11 10 9 13 13 C 1.53000 * 109.47060 * 64.99953 * 11 10 9 14 14 C 1.50699 * 109.47078 * 184.99841 * 11 10 9 15 15 H 1.07999 * 120.00019 * 359.97438 * 14 11 10 16 16 C 1.37877 * 120.00129 * 180.02562 * 14 11 10 17 17 N 1.31519 * 119.99723 * 359.97438 * 16 14 11 18 18 Si 1.86803 * 119.99900 * 179.97438 * 16 14 11 19 19 H 1.48501 * 109.47147 * 90.00197 * 18 16 14 20 20 H 1.48499 * 109.46797 * 209.99607 * 18 16 14 21 21 H 1.48500 * 109.47032 * 329.99738 * 18 16 14 22 22 C 1.40668 * 119.32894 * 0.02562 * 5 4 3 23 23 C 1.36625 * 119.74003 * 179.97438 * 2 1 3 24 24 H 1.09001 * 109.46578 * 90.00562 * 1 2 3 25 25 H 1.08996 * 109.46838 * 209.99961 * 1 2 3 26 26 H 1.08995 * 109.46948 * 330.00412 * 1 2 3 27 27 H 1.08001 * 119.66678 * 359.97438 * 3 2 1 28 28 H 1.08001 * 120.10666 * 179.97438 * 4 3 2 29 29 H 1.08003 * 125.03757 * 180.29037 * 8 6 5 30 30 H 1.09001 * 109.46949 * 144.68813 * 10 9 8 31 31 H 1.09004 * 109.46555 * 24.69585 * 10 9 8 32 32 H 1.09001 * 109.47194 * 299.99650 * 13 11 10 33 33 H 1.08992 * 109.47399 * 59.99823 * 13 11 10 34 34 H 1.09004 * 109.46724 * 180.02562 * 13 11 10 35 35 H 0.97003 * 119.99231 * 179.97438 * 17 16 14 36 36 H 1.07997 * 120.11545 * 0.02663 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1956 1.2056 0.0000 4 6 3.5730 1.2280 0.0005 5 6 4.2836 0.0319 0.0016 6 7 5.6262 -0.2731 0.0028 7 1 6.3454 0.3778 0.0026 8 6 5.7947 -1.6309 0.0098 9 6 4.5988 -2.2405 0.0044 10 6 4.3501 -3.7269 0.0062 11 6 4.1425 -4.2111 -1.4302 12 1 3.3409 -3.6369 -1.8949 13 6 5.4354 -4.0180 -2.2253 14 6 3.7729 -5.6720 -1.4194 15 1 3.6944 -6.2022 -0.4818 16 6 3.5361 -6.3320 -2.6065 17 7 3.6322 -5.6864 -3.7483 18 14 3.0786 -8.1431 -2.5931 19 1 1.6023 -8.2802 -2.5098 20 1 3.5658 -8.7859 -3.8399 21 1 3.7041 -8.8029 -1.4189 22 6 3.5811 -1.1868 0.0016 23 6 2.1848 -1.1863 0.0005 24 1 -0.3632 -0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.6458 2.1352 -0.0004 28 1 4.0994 2.1711 0.0001 29 1 6.7487 -2.1372 0.0166 30 1 3.4597 -3.9455 0.5957 31 1 5.2087 -4.2383 0.4416 32 1 5.7027 -2.9613 -2.2332 33 1 6.2369 -4.5920 -1.7607 34 1 5.2873 -4.3625 -3.2488 35 1 3.4660 -6.1510 -4.5835 36 1 1.6425 -2.1202 0.0005 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259865278.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:37 Heat of formation + Delta-G solvation = 34.044087 kcal Electronic energy + Delta-G solvation = -16947.839458 eV Core-core repulsion = 14396.373241 eV Total energy + Delta-G solvation = -2551.466217 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.84852 -37.06690 -35.01249 -32.27871 -31.24786 -30.38399 -28.33735 -26.07058 -25.40304 -24.72250 -22.30374 -20.74815 -20.02821 -18.41095 -17.26512 -16.08246 -15.78665 -14.76844 -14.55835 -14.11408 -13.85736 -13.54945 -13.16387 -13.03402 -12.70365 -12.27593 -11.96342 -11.81241 -11.41085 -11.22512 -10.94127 -10.88394 -10.78194 -10.49001 -10.33482 -10.01175 -9.61213 -9.51247 -8.87235 -8.67390 -8.22945 -7.70226 -7.06307 -5.88367 -3.94948 1.51970 1.96074 3.22205 3.35635 3.42163 3.45437 3.52330 4.25788 4.51446 5.03535 5.18762 5.27159 5.41765 5.42357 5.60810 5.76875 5.79031 5.86502 6.04762 6.07295 6.25256 6.36591 6.44981 6.61288 6.78636 6.85439 6.92532 7.03899 7.12214 7.19793 7.26295 7.41518 7.55011 7.61905 7.83952 7.94170 8.15006 8.29178 8.57174 9.10008 9.69318 11.17181 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.026251 B = 0.006241 C = 0.005407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.362467 B = 4485.066706 C = 5177.694622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.128 4.128 3 C -0.102 4.102 4 C -0.137 4.137 5 C 0.090 3.910 6 N -0.602 5.602 7 H 0.409 0.591 8 C 0.027 3.973 9 C -0.130 4.130 10 C -0.042 4.042 11 C 0.051 3.949 12 H 0.025 0.975 13 C -0.134 4.134 14 C -0.511 4.511 15 H 0.054 0.946 16 C 0.060 3.940 17 N -0.890 5.890 18 Si 0.888 3.112 19 H -0.282 1.282 20 H -0.288 1.288 21 H -0.275 1.275 22 C -0.097 4.097 23 C -0.057 4.057 24 H 0.064 0.936 25 H 0.062 0.938 26 H 0.058 0.942 27 H 0.118 0.882 28 H 0.113 0.887 29 H 0.164 0.836 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.008 0.992 33 H 0.020 0.980 34 H 0.077 0.923 35 H 0.258 0.742 36 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.325 12.653 7.430 14.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.129 4.129 3 C -0.121 4.121 4 C -0.158 4.158 5 C -0.017 4.017 6 N -0.205 5.205 7 H 0.244 0.756 8 C -0.096 4.096 9 C -0.136 4.136 10 C -0.080 4.080 11 C 0.032 3.968 12 H 0.043 0.957 13 C -0.191 4.191 14 C -0.550 4.550 15 H 0.072 0.928 16 C -0.141 4.141 17 N -0.530 5.530 18 Si 0.716 3.284 19 H -0.208 1.208 20 H -0.214 1.214 21 H -0.200 1.200 22 C -0.102 4.102 23 C -0.075 4.075 24 H 0.082 0.918 25 H 0.081 0.919 26 H 0.077 0.923 27 H 0.136 0.864 28 H 0.131 0.869 29 H 0.181 0.819 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.027 0.973 33 H 0.039 0.961 34 H 0.096 0.904 35 H 0.068 0.932 36 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 0.435 12.655 7.235 14.583 hybrid contribution 0.263 -0.671 -0.217 0.753 sum 0.699 11.984 7.017 13.905 Atomic orbital electron populations 1.20675 0.91610 1.02016 1.01871 1.19295 0.95721 0.92824 1.05068 1.20561 0.92846 0.97186 1.01535 1.19869 0.93746 0.94452 1.07711 1.18254 0.83769 0.95258 1.04455 1.41627 1.05257 1.06896 1.66715 0.75576 1.21553 0.99418 0.81603 1.07073 1.20769 0.90424 0.95939 1.06502 1.20228 1.00193 0.86783 1.00766 1.18594 0.94348 0.95124 0.88690 0.95658 1.21781 0.97728 0.95846 1.03785 1.21249 1.46202 0.95134 0.92385 0.92785 1.24963 0.95576 0.97812 0.95703 1.69916 1.49833 1.35905 0.97305 0.86665 0.78652 0.85753 0.77326 1.20782 1.21382 1.19982 1.19181 0.93175 0.92147 1.05657 1.20250 0.92100 0.97724 0.97463 0.91755 0.91854 0.92308 0.86443 0.86941 0.81858 0.92641 0.92740 0.97256 0.96065 0.90443 0.93219 0.85868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.27 9.99 36.01 0.36 -0.91 16 2 C -0.13 -1.94 5.85 -104.98 -0.61 -2.55 16 3 C -0.10 -1.41 9.66 -39.54 -0.38 -1.80 16 4 C -0.14 -1.95 10.08 -39.43 -0.40 -2.34 16 5 C 0.09 1.48 7.28 -83.99 -0.61 0.87 16 6 N -0.60 -8.68 6.07 -10.65 -0.06 -8.75 16 7 H 0.41 4.32 8.96 -40.82 -0.37 3.95 16 8 C 0.03 0.44 10.76 -16.73 -0.18 0.26 16 9 C -0.13 -2.51 4.88 -102.71 -0.50 -3.02 16 10 C -0.04 -0.89 5.16 -27.88 -0.14 -1.04 16 11 C 0.05 1.30 2.29 -91.77 -0.21 1.09 16 12 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 13 C -0.13 -3.31 8.73 37.16 0.32 -2.99 16 14 C -0.51 -14.24 8.56 -34.44 -0.29 -14.53 16 15 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 16 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 17 N -0.89 -26.14 11.32 55.43 0.63 -25.52 16 18 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 19 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 21 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 22 C -0.10 -1.83 6.35 -105.14 -0.67 -2.49 16 23 C -0.06 -1.02 9.67 -39.65 -0.38 -1.40 16 24 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.06 0.74 8.07 -51.93 -0.42 0.32 16 26 H 0.06 0.59 8.08 -51.93 -0.42 0.17 16 27 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 28 H 0.11 1.27 8.06 -52.49 -0.42 0.85 16 29 H 0.16 2.28 8.06 -52.48 -0.42 1.85 16 30 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.01 0.20 6.67 -51.93 -0.35 -0.15 16 33 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.08 2.14 6.07 -51.93 -0.32 1.83 16 35 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 36 H 0.12 2.21 8.06 -52.49 -0.42 1.79 16 LS Contribution 299.66 15.07 4.52 4.52 Total: -1.00 -31.02 299.66 -8.95 -39.98 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -5.21 Total: 2.47 kcal Atomic # 6 Polarization: -25.44 SS G_CDS: -3.80 Total: -29.24 kcal Atomic # 7 Polarization: -34.83 SS G_CDS: 0.56 Total: -34.26 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -31.02 -8.95 -39.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259865278.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.020 kcal (2) G-P(sol) polarization free energy of solvation -31.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds