Wall clock time and date at job start Mon Mar 30 2020 05:54:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38833 * 119.73233 * 2 1 4 4 C 1.37753 * 120.66713 * 179.97438 * 3 2 1 5 5 C 1.39126 * 119.77899 * 359.97438 * 4 3 2 6 6 N 1.37683 * 133.51239 * 180.02562 * 5 4 3 7 7 H 0.97006 * 125.05748 * 359.96378 * 6 5 4 8 8 C 1.36824 * 109.87508 * 179.72079 * 6 5 4 9 9 C 1.34237 * 109.93014 * 0.40706 * 8 6 5 10 10 C 1.50705 * 126.50508 * 179.86275 * 9 8 6 11 11 C 1.52997 * 109.47390 * 264.69493 * 10 9 8 12 12 H 1.09002 * 109.47153 * 304.99634 * 11 10 9 13 13 C 1.53000 * 109.47060 * 64.99953 * 11 10 9 14 14 C 1.50699 * 109.47078 * 184.99841 * 11 10 9 15 15 H 1.07999 * 120.00019 * 359.97438 * 14 11 10 16 16 C 1.37877 * 120.00129 * 180.02562 * 14 11 10 17 17 N 1.31519 * 119.99723 * 359.97438 * 16 14 11 18 18 Si 1.86803 * 119.99900 * 179.97438 * 16 14 11 19 19 H 1.48501 * 109.47147 * 90.00197 * 18 16 14 20 20 H 1.48499 * 109.46797 * 209.99607 * 18 16 14 21 21 H 1.48500 * 109.47032 * 329.99738 * 18 16 14 22 22 C 1.40668 * 119.32894 * 0.02562 * 5 4 3 23 23 C 1.36625 * 119.74003 * 179.97438 * 2 1 3 24 24 H 1.09001 * 109.46578 * 90.00562 * 1 2 3 25 25 H 1.08996 * 109.46838 * 209.99961 * 1 2 3 26 26 H 1.08995 * 109.46948 * 330.00412 * 1 2 3 27 27 H 1.08001 * 119.66678 * 359.97438 * 3 2 1 28 28 H 1.08001 * 120.10666 * 179.97438 * 4 3 2 29 29 H 1.08003 * 125.03757 * 180.29037 * 8 6 5 30 30 H 1.09001 * 109.46949 * 144.68813 * 10 9 8 31 31 H 1.09004 * 109.46555 * 24.69585 * 10 9 8 32 32 H 1.09001 * 109.47194 * 299.99650 * 13 11 10 33 33 H 1.08992 * 109.47399 * 59.99823 * 13 11 10 34 34 H 1.09004 * 109.46724 * 180.02562 * 13 11 10 35 35 H 0.97003 * 119.99231 * 179.97438 * 17 16 14 36 36 H 1.07997 * 120.11545 * 0.02663 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1956 1.2056 0.0000 4 6 3.5730 1.2280 0.0005 5 6 4.2836 0.0319 0.0016 6 7 5.6262 -0.2731 0.0028 7 1 6.3454 0.3778 0.0026 8 6 5.7947 -1.6309 0.0098 9 6 4.5988 -2.2405 0.0044 10 6 4.3501 -3.7269 0.0062 11 6 4.1425 -4.2111 -1.4302 12 1 3.3409 -3.6369 -1.8949 13 6 5.4354 -4.0180 -2.2253 14 6 3.7729 -5.6720 -1.4194 15 1 3.6944 -6.2022 -0.4818 16 6 3.5361 -6.3320 -2.6065 17 7 3.6322 -5.6864 -3.7483 18 14 3.0786 -8.1431 -2.5931 19 1 1.6023 -8.2802 -2.5098 20 1 3.5658 -8.7859 -3.8399 21 1 3.7041 -8.8029 -1.4189 22 6 3.5811 -1.1868 0.0016 23 6 2.1848 -1.1863 0.0005 24 1 -0.3632 -0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.6458 2.1352 -0.0004 28 1 4.0994 2.1711 0.0001 29 1 6.7487 -2.1372 0.0166 30 1 3.4597 -3.9455 0.5957 31 1 5.2087 -4.2383 0.4416 32 1 5.7027 -2.9613 -2.2332 33 1 6.2369 -4.5920 -1.7607 34 1 5.2873 -4.3625 -3.2488 35 1 3.4660 -6.1510 -4.5835 36 1 1.6425 -2.1202 0.0005 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259865278.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:36 Heat of formation + Delta-G solvation = 17.439665 kcal Electronic energy + Delta-G solvation = -16948.559480 eV Core-core repulsion = 14396.373241 eV Total energy + Delta-G solvation = -2552.186238 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.09023 -38.26347 -36.89887 -34.06035 -32.50439 -31.85565 -29.79545 -27.43423 -27.11887 -26.60223 -23.49729 -21.93852 -21.88239 -19.84813 -18.60703 -18.17645 -16.98383 -16.57966 -15.93971 -15.44490 -15.22202 -14.87428 -14.69206 -14.48818 -14.12513 -13.85541 -13.44776 -13.18373 -12.97365 -12.82412 -12.75024 -12.43168 -12.25563 -12.11954 -11.96693 -11.70480 -11.45309 -11.35387 -10.76293 -10.40494 -10.28950 -8.91259 -8.37265 -8.03576 -6.19376 0.29817 0.75500 1.42369 1.42610 1.53410 1.89421 2.37519 2.46403 3.02139 3.22206 3.88173 4.03726 4.15304 4.31095 4.46181 4.53244 4.62465 4.74675 4.87357 4.90539 4.92775 4.95776 5.06884 5.13445 5.21049 5.24280 5.32524 5.40170 5.50988 5.61175 5.66055 5.84783 5.93093 5.96625 6.06994 6.22853 6.35586 6.43508 6.87334 6.94499 7.48944 9.00047 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.026251 B = 0.006241 C = 0.005407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.362467 B = 4485.066706 C = 5177.694622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.125 4.125 3 C -0.104 4.104 4 C -0.128 4.128 5 C 0.076 3.924 6 N -0.584 5.584 7 H 0.430 0.570 8 C 0.051 3.949 9 C -0.181 4.181 10 C -0.025 4.025 11 C 0.052 3.948 12 H -0.019 1.019 13 C -0.118 4.118 14 C -0.532 4.532 15 H 0.054 0.946 16 C 0.009 3.991 17 N -0.921 5.921 18 Si 0.954 3.046 19 H -0.278 1.278 20 H -0.283 1.283 21 H -0.265 1.265 22 C -0.130 4.130 23 C -0.098 4.098 24 H 0.067 0.933 25 H 0.059 0.941 26 H 0.087 0.913 27 H 0.156 0.844 28 H 0.150 0.850 29 H 0.191 0.809 30 H 0.040 0.960 31 H 0.063 0.937 32 H 0.026 0.974 33 H 0.030 0.970 34 H 0.045 0.955 35 H 0.259 0.741 36 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.988 14.400 8.177 16.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.126 4.126 3 C -0.123 4.123 4 C -0.149 4.149 5 C -0.032 4.032 6 N -0.189 5.189 7 H 0.270 0.730 8 C -0.075 4.075 9 C -0.187 4.187 10 C -0.063 4.063 11 C 0.034 3.966 12 H -0.001 1.001 13 C -0.176 4.176 14 C -0.570 4.570 15 H 0.072 0.928 16 C -0.189 4.189 17 N -0.561 5.561 18 Si 0.780 3.220 19 H -0.203 1.203 20 H -0.209 1.209 21 H -0.190 1.190 22 C -0.135 4.135 23 C -0.117 4.117 24 H 0.086 0.914 25 H 0.078 0.922 26 H 0.105 0.895 27 H 0.173 0.827 28 H 0.168 0.832 29 H 0.208 0.792 30 H 0.058 0.942 31 H 0.081 0.919 32 H 0.045 0.955 33 H 0.049 0.951 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 1.110 14.434 7.996 16.538 hybrid contribution 0.024 -1.117 -0.439 1.200 sum 1.134 13.318 7.557 15.355 Atomic orbital electron populations 1.20739 0.89685 1.03271 1.02451 1.19692 0.97314 0.92497 1.03101 1.21026 0.93140 0.97894 1.00273 1.20345 0.94051 0.95020 1.05459 1.18514 0.84372 0.95220 1.05097 1.41563 1.05350 1.06642 1.65366 0.73038 1.21851 0.99325 0.82402 1.03935 1.20622 0.92324 0.94841 1.10955 1.19868 0.99802 0.89070 0.97587 1.18501 0.93263 0.93616 0.91258 1.00067 1.21566 0.97493 0.96917 1.01627 1.21638 1.46374 0.96475 0.92528 0.92809 1.25783 0.95464 1.02323 0.95304 1.70069 1.50546 1.37630 0.97828 0.85615 0.78405 0.80354 0.77645 1.20343 1.20881 1.18953 1.19468 0.93774 0.93400 1.06861 1.20308 0.92402 0.98143 1.00815 0.91391 0.92242 0.89451 0.82678 0.83220 0.79200 0.94154 0.91885 0.95500 0.95084 0.93579 0.93218 0.88249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.43 9.99 71.24 0.71 -1.71 16 2 C -0.12 -3.71 5.85 -20.10 -0.12 -3.83 16 3 C -0.10 -2.59 9.66 22.30 0.22 -2.38 16 4 C -0.13 -3.24 10.08 22.37 0.23 -3.02 16 5 C 0.08 2.37 7.28 39.03 0.28 2.65 16 6 N -0.58 -15.45 6.07 -187.62 -1.14 -16.59 16 7 H 0.43 7.57 8.96 -92.70 -0.83 6.74 16 8 C 0.05 1.58 10.76 83.00 0.89 2.47 16 9 C -0.18 -7.12 4.88 -18.63 -0.09 -7.21 16 10 C -0.03 -1.12 5.16 29.85 0.15 -0.97 16 11 C 0.05 2.79 2.29 -11.54 -0.03 2.76 16 12 H -0.02 -1.16 8.14 -2.39 -0.02 -1.18 16 13 C -0.12 -5.98 8.73 71.98 0.63 -5.35 16 14 C -0.53 -30.56 8.56 25.60 0.22 -30.34 16 15 H 0.05 3.01 7.74 -2.91 -0.02 2.98 16 16 C 0.01 0.53 5.30 84.65 0.45 0.98 16 17 N -0.92 -55.67 11.32 21.45 0.24 -55.43 16 18 Si 0.95 44.88 29.54 68.60 2.03 46.91 16 19 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 20 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 21 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 22 C -0.13 -5.04 6.35 -20.20 -0.13 -5.16 16 23 C -0.10 -3.68 9.67 22.23 0.22 -3.46 16 24 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 25 H 0.06 1.40 8.07 -2.39 -0.02 1.38 16 26 H 0.09 1.51 8.08 -2.39 -0.02 1.49 16 27 H 0.16 2.66 8.06 -2.91 -0.02 2.63 16 28 H 0.15 2.63 8.06 -2.91 -0.02 2.61 16 29 H 0.19 4.77 8.06 -2.91 -0.02 4.75 16 30 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.06 2.61 8.14 -2.39 -0.02 2.60 16 32 H 0.03 1.21 6.67 -2.39 -0.02 1.19 16 33 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.05 2.61 6.07 -2.39 -0.01 2.59 16 35 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 36 H 0.10 4.00 8.06 -2.91 -0.02 3.97 16 Total: -1.00 -69.76 299.66 5.00 -64.76 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: 0.24 Total: 14.92 kcal Atomic # 6 Polarization: -58.21 SS G_CDS: 3.63 Total: -54.58 kcal Atomic # 7 Polarization: -71.12 SS G_CDS: -0.90 Total: -72.01 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -69.76 5.00 -64.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259865278.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.199 kcal (2) G-P(sol) polarization free energy of solvation -69.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds