Wall clock time and date at job start Mon Mar 30 2020 06:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50702 * 109.47297 * 2 1 4 4 C 1.36659 * 120.11265 * 264.95184 * 3 2 1 5 5 C 1.38792 * 120.52676 * 180.02562 * 4 3 2 6 6 C 1.37795 * 120.66252 * 0.02562 * 5 4 3 7 7 C 1.39083 * 119.77690 * 0.02562 * 6 5 4 8 8 C 1.39586 * 120.11777 * 84.99789 * 3 2 1 9 9 C 1.46492 * 134.03955 * 359.96051 * 8 3 2 10 10 C 1.34241 * 106.99667 * 180.02562 * 9 8 3 11 11 C 1.50697 * 125.02873 * 179.97438 * 10 9 8 12 12 C 1.50693 * 109.47297 * 85.02454 * 11 10 9 13 13 H 1.08004 * 120.00155 * 0.02562 * 12 11 10 14 14 C 1.37885 * 120.00445 * 179.97438 * 12 11 10 15 15 N 1.31513 * 119.99396 * 0.02562 * 14 12 11 16 16 Si 1.86791 * 120.00306 * 180.02562 * 14 12 11 17 17 H 1.48505 * 109.47315 * 0.02562 * 16 14 12 18 18 H 1.48506 * 109.47173 * 120.00218 * 16 14 12 19 19 H 1.48501 * 109.47513 * 240.00264 * 16 14 12 20 20 N 1.36826 * 109.93976 * 0.02562 * 10 9 8 21 21 C 1.46505 * 125.06493 * 179.97438 * 20 10 9 22 22 H 1.09000 * 109.47457 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47322 * 300.00402 * 1 2 3 24 24 H 1.09009 * 109.47051 * 60.00195 * 1 2 3 25 25 H 1.08994 * 109.46872 * 239.99777 * 2 1 3 26 26 H 1.08999 * 109.46653 * 120.00156 * 2 1 3 27 27 H 1.08000 * 119.74169 * 0.02741 * 4 3 2 28 28 H 1.07999 * 119.67200 * 180.29288 * 5 4 3 29 29 H 1.07998 * 120.10659 * 179.97438 * 6 5 4 30 30 H 1.08000 * 126.50368 * 0.02562 * 9 8 3 31 31 H 1.09002 * 109.47023 * 205.02855 * 11 10 9 32 32 H 1.09004 * 109.47395 * 325.02636 * 11 10 9 33 33 H 0.97000 * 119.99887 * 179.97438 * 15 14 12 34 34 H 1.08993 * 109.47049 * 270.03010 * 21 20 10 35 35 H 1.09001 * 109.46510 * 30.02808 * 21 20 10 36 36 H 1.09001 * 109.47211 * 150.02289 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3590 2.0325 -1.1776 5 6 2.8231 3.3406 -1.1875 6 6 2.9633 4.0454 -0.0118 7 6 2.6377 3.4420 1.1983 8 6 2.1667 2.1163 1.2028 9 6 1.9168 1.7804 2.6067 10 6 2.2328 2.8650 3.3318 11 6 2.1270 2.9635 4.8319 12 6 3.3793 2.4098 5.4612 13 1 4.1728 2.0254 4.8373 14 6 3.5128 2.3948 6.8335 15 7 2.5469 2.8633 7.5931 16 14 5.0654 1.7092 7.6135 17 1 5.9927 1.2489 6.5487 18 1 5.7243 2.7688 8.4189 19 1 4.7141 0.5654 8.4930 20 7 2.6641 3.8682 2.5074 21 6 3.0920 5.1971 2.9514 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3634 0.5138 -0.8901 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5139 0.8900 27 1 2.2553 1.4940 -2.1079 28 1 3.0727 3.8122 -2.1265 29 1 3.3255 5.0627 -0.0300 30 1 1.5483 0.8389 2.9862 31 1 2.0068 4.0079 5.1198 32 1 1.2649 2.3908 5.1738 33 1 2.6406 2.8525 8.5585 34 1 2.2328 5.8674 2.9719 35 1 3.5210 5.1255 3.9509 36 1 3.8407 5.5870 2.2618 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259866128.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:44 Heat of formation + Delta-G solvation = 35.712105 kcal Electronic energy + Delta-G solvation = -16967.362086 eV Core-core repulsion = 14415.968200 eV Total energy + Delta-G solvation = -2551.393886 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.76302 -37.16252 -33.88048 -33.14382 -31.73569 -30.16147 -28.71608 -26.84694 -25.53579 -23.68569 -22.85383 -21.14111 -20.06127 -18.66070 -16.47591 -16.24260 -15.71232 -14.91282 -14.68625 -14.45699 -13.99314 -13.78045 -12.98665 -12.91037 -12.57778 -12.41482 -12.05013 -11.89388 -11.66855 -11.58348 -11.51915 -11.16406 -10.83040 -10.71461 -10.56809 -10.51787 -10.20148 -9.80938 -9.46189 -8.87840 -8.53492 -7.46334 -6.89272 -6.13916 -4.19375 1.64133 2.12231 3.23870 3.31745 3.36250 3.48694 3.55849 4.34331 4.38699 5.02871 5.19897 5.21200 5.29214 5.41837 5.49481 5.63440 5.66440 5.69690 5.72690 5.91662 5.95441 6.02631 6.11863 6.22964 6.28046 6.42388 6.51113 6.65438 6.69905 6.91929 7.10549 7.14542 7.33803 7.38480 7.68242 7.81321 7.98820 8.01613 8.22144 8.85785 9.45636 10.94805 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.026194 B = 0.006291 C = 0.005642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.688414 B = 4449.805165 C = 4961.181767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.080 4.080 3 C -0.043 4.043 4 C -0.156 4.156 5 C -0.117 4.117 6 C -0.132 4.132 7 C 0.086 3.914 8 C -0.091 4.091 9 C -0.236 4.236 10 C 0.141 3.859 11 C 0.069 3.931 12 C -0.514 4.514 13 H 0.059 0.941 14 C 0.060 3.940 15 N -0.893 5.893 16 Si 0.897 3.103 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.282 1.282 20 N -0.484 5.484 21 C 0.081 3.919 22 H 0.052 0.948 23 H 0.059 0.941 24 H 0.050 0.950 25 H 0.063 0.937 26 H 0.072 0.928 27 H 0.112 0.888 28 H 0.115 0.885 29 H 0.110 0.890 30 H 0.139 0.861 31 H 0.029 0.971 32 H 0.046 0.954 33 H 0.263 0.737 34 H 0.060 0.940 35 H 0.094 0.906 36 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.245 0.495 -13.533 13.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.118 4.118 3 C -0.043 4.043 4 C -0.176 4.176 5 C -0.136 4.136 6 C -0.153 4.153 7 C -0.020 4.020 8 C -0.096 4.096 9 C -0.259 4.259 10 C 0.034 3.966 11 C 0.031 3.969 12 C -0.552 4.552 13 H 0.078 0.922 14 C -0.142 4.142 15 N -0.531 5.531 16 Si 0.724 3.276 17 H -0.196 1.196 18 H -0.209 1.209 19 H -0.208 1.208 20 N -0.167 5.167 21 C -0.061 4.061 22 H 0.071 0.929 23 H 0.078 0.922 24 H 0.070 0.930 25 H 0.082 0.918 26 H 0.090 0.910 27 H 0.130 0.870 28 H 0.133 0.867 29 H 0.128 0.872 30 H 0.156 0.844 31 H 0.047 0.953 32 H 0.064 0.936 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.113 0.887 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.202 0.837 -13.198 13.279 hybrid contribution 0.914 -0.173 0.535 1.073 sum -0.288 0.663 -12.663 12.684 Atomic orbital electron populations 1.21708 0.95091 1.01070 1.02193 1.20443 0.95953 0.93148 1.02240 1.18959 0.98628 0.95387 0.91355 1.20322 1.04909 0.95557 0.96782 1.20546 1.01868 0.94739 0.96444 1.19885 1.05892 0.99561 0.89956 1.18259 1.03849 0.94797 0.85118 1.19108 1.03732 0.93237 0.93564 1.21256 1.15392 0.99549 0.89692 1.21474 0.93848 0.86372 0.94865 1.18109 0.98807 0.98609 0.81337 1.21053 1.01866 1.41074 0.91256 0.92226 1.24993 0.96737 0.95234 0.97189 1.69957 1.32315 1.45986 1.04878 0.86451 0.83026 0.78807 0.79307 1.19619 1.20920 1.20751 1.43916 1.56289 1.12509 1.03971 1.21850 0.99884 0.81982 1.02422 0.92925 0.92177 0.93046 0.91801 0.90957 0.87035 0.86726 0.87234 0.84362 0.95288 0.93569 0.92722 0.92138 0.88719 0.91223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 9.90 37.16 0.37 -1.45 16 2 C -0.08 -1.12 5.98 -27.88 -0.17 -1.29 16 3 C -0.04 -0.71 5.13 -104.69 -0.54 -1.25 16 4 C -0.16 -2.33 9.60 -39.95 -0.38 -2.71 16 5 C -0.12 -1.70 10.01 -39.54 -0.40 -2.10 16 6 C -0.13 -2.14 9.96 -39.43 -0.39 -2.54 16 7 C 0.09 1.65 6.81 -83.99 -0.57 1.08 16 8 C -0.09 -1.79 6.15 -105.14 -0.65 -2.43 16 9 C -0.24 -5.01 10.74 -37.67 -0.40 -5.42 16 10 C 0.14 3.17 6.02 -81.77 -0.49 2.68 16 11 C 0.07 1.73 4.97 -29.04 -0.14 1.58 16 12 C -0.51 -14.03 9.09 -34.44 -0.31 -14.34 16 13 H 0.06 1.66 7.74 -52.48 -0.41 1.25 16 14 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 15 N -0.89 -25.50 13.29 55.43 0.74 -24.76 16 16 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 17 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 18 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 20 N -0.48 -9.71 3.18 -117.20 -0.37 -10.09 16 21 C 0.08 1.33 10.56 59.85 0.63 1.96 16 22 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 23 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 24 H 0.05 0.61 8.14 -51.92 -0.42 0.19 16 25 H 0.06 0.76 8.05 -51.93 -0.42 0.35 16 26 H 0.07 1.06 8.04 -51.93 -0.42 0.64 16 27 H 0.11 1.37 8.05 -52.49 -0.42 0.95 16 28 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 29 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 30 H 0.14 2.81 8.06 -52.49 -0.42 2.39 16 31 H 0.03 0.74 7.34 -51.93 -0.38 0.36 16 32 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.09 1.68 7.40 -51.93 -0.38 1.30 16 36 H 0.07 0.96 8.10 -51.93 -0.42 0.54 16 LS Contribution 305.62 15.07 4.61 4.61 Total: -1.00 -29.63 305.62 -8.96 -38.59 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: -5.37 Total: 0.22 kcal Atomic # 6 Polarization: -21.12 SS G_CDS: -3.55 Total: -24.67 kcal Atomic # 7 Polarization: -35.21 SS G_CDS: 0.36 Total: -34.85 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -29.63 -8.96 -38.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259866128.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.305 kcal (2) G-P(sol) polarization free energy of solvation -29.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds