Wall clock time and date at job start Mon Mar 30 2020 06:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50702 * 109.47297 * 2 1 4 4 C 1.36659 * 120.11265 * 264.95184 * 3 2 1 5 5 C 1.38792 * 120.52676 * 180.02562 * 4 3 2 6 6 C 1.37795 * 120.66252 * 0.02562 * 5 4 3 7 7 C 1.39083 * 119.77690 * 0.02562 * 6 5 4 8 8 C 1.39586 * 120.11777 * 84.99789 * 3 2 1 9 9 C 1.46492 * 134.03955 * 359.96051 * 8 3 2 10 10 C 1.34241 * 106.99667 * 180.02562 * 9 8 3 11 11 C 1.50697 * 125.02873 * 179.97438 * 10 9 8 12 12 C 1.50693 * 109.47297 * 85.02454 * 11 10 9 13 13 H 1.08004 * 120.00155 * 0.02562 * 12 11 10 14 14 C 1.37885 * 120.00445 * 179.97438 * 12 11 10 15 15 N 1.31513 * 119.99396 * 0.02562 * 14 12 11 16 16 Si 1.86791 * 120.00306 * 180.02562 * 14 12 11 17 17 H 1.48505 * 109.47315 * 0.02562 * 16 14 12 18 18 H 1.48506 * 109.47173 * 120.00218 * 16 14 12 19 19 H 1.48501 * 109.47513 * 240.00264 * 16 14 12 20 20 N 1.36826 * 109.93976 * 0.02562 * 10 9 8 21 21 C 1.46505 * 125.06493 * 179.97438 * 20 10 9 22 22 H 1.09000 * 109.47457 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47322 * 300.00402 * 1 2 3 24 24 H 1.09009 * 109.47051 * 60.00195 * 1 2 3 25 25 H 1.08994 * 109.46872 * 239.99777 * 2 1 3 26 26 H 1.08999 * 109.46653 * 120.00156 * 2 1 3 27 27 H 1.08000 * 119.74169 * 0.02741 * 4 3 2 28 28 H 1.07999 * 119.67200 * 180.29288 * 5 4 3 29 29 H 1.07998 * 120.10659 * 179.97438 * 6 5 4 30 30 H 1.08000 * 126.50368 * 0.02562 * 9 8 3 31 31 H 1.09002 * 109.47023 * 205.02855 * 11 10 9 32 32 H 1.09004 * 109.47395 * 325.02636 * 11 10 9 33 33 H 0.97000 * 119.99887 * 179.97438 * 15 14 12 34 34 H 1.08993 * 109.47049 * 270.03010 * 21 20 10 35 35 H 1.09001 * 109.46510 * 30.02808 * 21 20 10 36 36 H 1.09001 * 109.47211 * 150.02289 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3590 2.0325 -1.1776 5 6 2.8231 3.3406 -1.1875 6 6 2.9633 4.0454 -0.0118 7 6 2.6377 3.4420 1.1983 8 6 2.1667 2.1163 1.2028 9 6 1.9168 1.7804 2.6067 10 6 2.2328 2.8650 3.3318 11 6 2.1270 2.9635 4.8319 12 6 3.3793 2.4098 5.4612 13 1 4.1728 2.0254 4.8373 14 6 3.5128 2.3948 6.8335 15 7 2.5469 2.8633 7.5931 16 14 5.0654 1.7092 7.6135 17 1 5.9927 1.2489 6.5487 18 1 5.7243 2.7688 8.4189 19 1 4.7141 0.5654 8.4930 20 7 2.6641 3.8682 2.5074 21 6 3.0920 5.1971 2.9514 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3634 0.5138 -0.8901 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5139 0.8900 27 1 2.2553 1.4940 -2.1079 28 1 3.0727 3.8122 -2.1265 29 1 3.3255 5.0627 -0.0300 30 1 1.5483 0.8389 2.9862 31 1 2.0068 4.0079 5.1198 32 1 1.2649 2.3908 5.1738 33 1 2.6406 2.8525 8.5585 34 1 2.2328 5.8674 2.9719 35 1 3.5210 5.1255 3.9509 36 1 3.8407 5.5870 2.2618 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259866128.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:43 Heat of formation + Delta-G solvation = 21.539195 kcal Electronic energy + Delta-G solvation = -16967.976669 eV Core-core repulsion = 14415.968200 eV Total energy + Delta-G solvation = -2552.008469 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.19392 -38.47710 -35.47644 -34.80512 -33.13984 -31.92778 -29.94862 -28.45024 -26.98685 -25.40706 -24.21634 -22.49046 -21.44620 -20.14432 -18.59317 -17.62145 -17.13833 -16.56531 -16.16010 -15.89895 -15.24645 -15.07527 -14.44342 -14.23307 -14.12663 -13.91460 -13.75553 -13.37681 -13.15844 -13.04060 -12.74341 -12.70307 -12.58532 -12.36746 -11.98916 -11.80413 -11.70214 -11.40718 -11.38165 -10.66602 -10.25848 -8.89006 -8.40598 -8.19478 -6.39598 0.32602 0.83431 1.36641 1.38130 1.50972 1.92106 2.07183 2.38990 3.05146 3.06114 3.80673 3.99542 4.07231 4.14743 4.29968 4.38365 4.42847 4.50121 4.60138 4.63659 4.74451 4.79032 4.87582 4.95182 5.03375 5.15082 5.21362 5.26038 5.28100 5.38428 5.44519 5.65682 5.68716 5.85513 6.01356 6.07603 6.19128 6.45614 6.59469 6.70418 7.29641 8.83167 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.026194 B = 0.006291 C = 0.005642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.688414 B = 4449.805165 C = 4961.181767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.081 4.081 3 C -0.052 4.052 4 C -0.153 4.153 5 C -0.101 4.101 6 C -0.143 4.143 7 C 0.069 3.931 8 C -0.123 4.123 9 C -0.242 4.242 10 C 0.108 3.892 11 C 0.083 3.917 12 C -0.528 4.528 13 H 0.048 0.952 14 C 0.013 3.987 15 N -0.925 5.925 16 Si 0.964 3.036 17 H -0.271 1.271 18 H -0.273 1.273 19 H -0.274 1.274 20 N -0.490 5.490 21 C 0.078 3.922 22 H 0.072 0.928 23 H 0.034 0.966 24 H 0.062 0.938 25 H 0.091 0.909 26 H 0.056 0.944 27 H 0.147 0.853 28 H 0.156 0.844 29 H 0.134 0.866 30 H 0.131 0.869 31 H 0.014 0.986 32 H 0.019 0.981 33 H 0.268 0.732 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.170 0.462 -16.384 16.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.118 4.118 3 C -0.053 4.053 4 C -0.172 4.172 5 C -0.120 4.120 6 C -0.163 4.163 7 C -0.037 4.037 8 C -0.128 4.128 9 C -0.266 4.266 10 C 0.000 4.000 11 C 0.046 3.954 12 C -0.566 4.566 13 H 0.066 0.934 14 C -0.186 4.186 15 N -0.564 5.564 16 Si 0.789 3.211 17 H -0.195 1.195 18 H -0.198 1.198 19 H -0.200 1.200 20 N -0.174 5.174 21 C -0.063 4.063 22 H 0.091 0.909 23 H 0.054 0.946 24 H 0.081 0.919 25 H 0.110 0.890 26 H 0.074 0.926 27 H 0.165 0.835 28 H 0.174 0.826 29 H 0.152 0.848 30 H 0.149 0.851 31 H 0.032 0.968 32 H 0.038 0.962 33 H 0.077 0.923 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -0.129 0.817 -16.060 16.081 hybrid contribution 0.543 -0.171 1.257 1.380 sum 0.414 0.646 -14.802 14.822 Atomic orbital electron populations 1.21669 0.94245 1.02189 1.01495 1.20503 0.96651 0.91851 1.02799 1.19340 0.98400 0.96547 0.90972 1.20793 1.03203 0.95946 0.97298 1.21100 0.99124 0.94409 0.97392 1.20276 1.05970 1.00958 0.89135 1.18725 1.04391 0.95075 0.85499 1.19312 1.05692 0.94326 0.93459 1.21351 1.14879 0.98969 0.91421 1.21010 0.97011 0.88220 0.93711 1.17739 0.97061 0.96873 0.83770 1.21239 1.02326 1.41338 0.91741 0.93356 1.25824 0.99913 0.95326 0.97574 1.70057 1.34184 1.46829 1.05337 0.85407 0.79038 0.78392 0.78286 1.19500 1.19796 1.19972 1.43993 1.56291 1.12881 1.04223 1.21996 1.01256 0.81045 1.01981 0.90945 0.94645 0.91902 0.89017 0.92567 0.83525 0.82646 0.84778 0.85097 0.96769 0.96237 0.92301 0.90588 0.90947 0.88174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.32 9.90 71.98 0.71 -2.60 16 2 C -0.08 -2.12 5.98 29.85 0.18 -1.94 16 3 C -0.05 -1.64 5.13 -19.91 -0.10 -1.74 16 4 C -0.15 -3.94 9.60 22.03 0.21 -3.73 16 5 C -0.10 -2.49 10.01 22.30 0.22 -2.27 16 6 C -0.14 -4.21 9.96 22.37 0.22 -3.98 16 7 C 0.07 2.60 6.81 39.03 0.27 2.87 16 8 C -0.12 -4.85 6.15 -20.20 -0.12 -4.98 16 9 C -0.24 -10.89 10.74 23.51 0.25 -10.64 16 10 C 0.11 5.13 6.02 40.87 0.25 5.38 16 11 C 0.08 4.47 4.97 29.10 0.14 4.62 16 12 C -0.53 -30.18 9.09 25.60 0.23 -29.94 16 13 H 0.05 2.80 7.74 -2.91 -0.02 2.78 16 14 C 0.01 0.71 5.46 84.66 0.46 1.18 16 15 N -0.92 -54.40 13.29 21.45 0.28 -54.11 16 16 Si 0.96 44.02 29.54 68.60 2.03 46.04 16 17 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 18 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 19 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 20 N -0.49 -20.16 3.18 -524.69 -1.67 -21.82 16 21 C 0.08 2.60 10.56 127.77 1.35 3.95 16 22 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 23 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 24 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 25 H 0.09 1.88 8.05 -2.39 -0.02 1.86 16 26 H 0.06 1.64 8.04 -2.39 -0.02 1.62 16 27 H 0.15 2.75 8.05 -2.91 -0.02 2.73 16 28 H 0.16 2.59 8.06 -2.91 -0.02 2.56 16 29 H 0.13 3.22 8.06 -2.91 -0.02 3.19 16 30 H 0.13 5.79 8.06 -2.91 -0.02 5.76 16 31 H 0.01 0.78 7.34 -2.39 -0.02 0.76 16 32 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.27 14.71 8.31 -92.71 -0.77 13.94 16 34 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 35 H 0.07 2.70 7.40 -2.39 -0.02 2.68 16 36 H 0.10 2.63 8.10 -2.39 -0.02 2.61 16 Total: -1.00 -66.33 305.62 5.96 -60.36 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: 1.04 Total: 13.38 kcal Atomic # 6 Polarization: -48.12 SS G_CDS: 4.28 Total: -43.85 kcal Atomic # 7 Polarization: -74.55 SS G_CDS: -1.38 Total: -75.94 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.04 kcal Total: -66.33 5.96 -60.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259866128.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.903 kcal (2) G-P(sol) polarization free energy of solvation -66.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds