Wall clock time and date at job start Mon Mar 30 2020 05:22:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46497 * 109.46971 * 2 1 4 4 C 1.37964 * 127.13378 * 273.76267 * 3 2 1 5 5 C 1.39749 * 126.53581 * 0.02567 * 4 3 2 6 6 H 1.08002 * 119.99376 * 359.95372 * 5 4 3 7 7 C 1.40276 * 120.00213 * 179.97438 * 5 4 3 8 8 N 1.30666 * 120.00357 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99872 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47155 * 60.00275 * 9 7 5 11 11 H 1.48506 * 109.47078 * 179.97438 * 9 7 5 12 12 H 1.48493 * 109.47081 * 299.99909 * 9 7 5 13 13 N 1.33282 * 106.93417 * 179.97438 * 4 3 2 14 14 N 1.28515 * 109.75377 * 0.02562 * 13 4 3 15 15 C 1.32451 * 110.13806 * 359.97438 * 14 13 4 16 16 C 1.47407 * 126.28038 * 179.73789 * 15 14 13 17 17 C 1.39859 * 120.17074 * 160.30728 * 16 15 14 18 18 C 1.37863 * 119.82946 * 179.72389 * 17 16 15 19 19 C 1.38439 * 120.17087 * 0.53169 * 18 17 16 20 20 C 1.38437 * 120.33751 * 359.76527 * 19 18 17 21 21 C 1.37866 * 120.17280 * 359.95449 * 20 19 18 22 22 H 1.08994 * 109.47624 * 60.00082 * 1 2 3 23 23 H 1.09008 * 109.47591 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.47413 * 300.00000 * 1 2 3 25 25 H 1.09001 * 109.46802 * 239.99612 * 2 1 3 26 26 H 1.09003 * 109.46865 * 119.99745 * 2 1 3 27 27 H 0.96999 * 120.00892 * 180.02562 * 8 7 5 28 28 H 1.08004 * 120.08014 * 359.97438 * 17 16 15 29 29 H 1.07997 * 119.92120 * 180.27680 * 18 17 16 30 30 H 1.07995 * 119.83274 * 179.74495 * 19 18 17 31 31 H 1.08000 * 119.91504 * 179.97438 * 20 19 18 32 32 H 1.08001 * 120.09051 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2278 2.1905 -1.0975 5 6 2.0134 1.8495 -2.4357 6 1 1.6481 0.8656 -2.6903 7 6 2.2730 2.7851 -3.4482 8 7 2.7148 3.9755 -3.1402 9 14 1.9857 2.3294 -5.2369 10 1 0.5573 1.9746 -5.4340 11 1 2.3325 3.4843 -6.1037 12 1 2.8383 1.1675 -5.5948 13 7 2.6727 3.3599 -0.6383 14 7 2.7490 3.3223 0.6441 15 6 2.3611 2.1368 1.0894 16 6 2.3136 1.7072 2.4987 17 6 1.5213 0.6179 2.8752 18 6 1.4865 0.2186 4.1943 19 6 2.2247 0.8997 5.1471 20 6 3.0065 1.9827 4.7832 21 6 3.0561 2.3905 3.4672 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 2.8940 4.6226 -3.8402 28 1 0.9414 0.0884 2.1337 29 1 0.8787 -0.6251 4.4859 30 1 2.1902 0.5848 6.1795 31 1 3.5792 2.5094 5.5322 32 1 3.6668 3.2353 3.1848 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259873420.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:36 Heat of formation + Delta-G solvation = 70.934738 kcal Electronic energy + Delta-G solvation = -16892.265051 eV Core-core repulsion = 14238.858190 eV Total energy + Delta-G solvation = -2653.406861 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 243.107 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.64088 -39.68832 -36.21837 -35.63592 -32.90378 -31.80298 -31.18346 -30.18034 -27.41730 -24.79823 -23.95399 -23.34821 -22.09393 -21.05657 -19.06009 -17.78593 -17.36142 -16.90756 -16.39155 -16.09317 -15.55154 -15.12696 -14.80389 -14.45720 -13.98235 -13.82075 -13.58272 -13.27916 -13.19949 -12.90165 -12.76809 -12.29389 -12.13011 -11.97521 -11.74011 -11.62569 -11.36457 -10.54165 -10.39495 -10.27559 -9.82387 -9.07383 -8.54380 -6.59912 0.15851 0.53741 1.34743 1.40408 1.56172 1.78934 2.11662 2.33570 2.48973 3.05937 3.35883 3.74613 3.85767 4.04953 4.15969 4.20942 4.32267 4.37411 4.54986 4.63369 4.74426 4.79038 4.91801 5.06409 5.06930 5.19753 5.28978 5.33175 5.55360 5.61745 5.63774 5.86377 6.12232 6.21753 6.26453 6.76029 7.01607 8.41443 8.72024 Molecular weight = 243.11amu Principal moments of inertia in cm(-1) A = 0.041183 B = 0.006472 C = 0.005695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.731561 B = 4325.177856 C = 4915.756217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.106 3.894 3 N -0.523 5.523 4 C 0.314 3.686 5 C -0.469 4.469 6 H 0.103 0.897 7 C 0.028 3.972 8 N -0.787 5.787 9 Si 1.006 2.994 10 H -0.253 1.253 11 H -0.272 1.272 12 H -0.253 1.253 13 N -0.394 5.394 14 N -0.331 5.331 15 C 0.106 3.894 16 C -0.005 4.005 17 C -0.144 4.144 18 C -0.109 4.109 19 C -0.122 4.122 20 C -0.113 4.113 21 C -0.121 4.121 22 H 0.044 0.956 23 H 0.111 0.889 24 H 0.053 0.947 25 H 0.087 0.913 26 H 0.103 0.897 27 H 0.285 0.715 28 H 0.138 0.862 29 H 0.159 0.841 30 H 0.160 0.840 31 H 0.149 0.851 32 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.214 -11.861 9.090 15.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.016 4.016 3 N -0.223 5.223 4 C 0.070 3.930 5 C -0.509 4.509 6 H 0.121 0.879 7 C -0.193 4.193 8 N -0.412 5.412 9 Si 0.825 3.175 10 H -0.177 1.177 11 H -0.197 1.197 12 H -0.177 1.177 13 N -0.240 5.240 14 N -0.173 5.173 15 C -0.156 4.156 16 C -0.007 4.007 17 C -0.164 4.164 18 C -0.127 4.127 19 C -0.141 4.141 20 C -0.131 4.131 21 C -0.141 4.141 22 H 0.063 0.937 23 H 0.129 0.871 24 H 0.072 0.928 25 H 0.105 0.895 26 H 0.121 0.879 27 H 0.095 0.905 28 H 0.155 0.845 29 H 0.177 0.823 30 H 0.177 0.823 31 H 0.167 0.833 32 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -3.623 -10.187 9.029 14.086 hybrid contribution -0.257 -0.657 -1.088 1.297 sum -3.880 -10.844 7.940 13.990 Atomic orbital electron populations 1.22161 0.93656 1.04221 1.01809 1.21920 0.96168 0.79258 1.04266 1.46505 1.56601 1.13955 1.05200 1.21934 0.94751 0.86183 0.90085 1.18620 1.43623 1.01838 0.86773 0.87925 1.27039 0.92180 0.93567 1.06498 1.70096 1.28711 1.05279 1.37125 0.84917 0.80181 0.78922 0.73523 1.17665 1.19657 1.17665 1.75493 1.29406 1.19671 0.99461 1.74242 1.18101 1.17980 1.06965 1.22754 1.11633 0.91278 0.89964 1.17862 0.98982 0.97222 0.86683 1.21796 0.99426 0.96610 0.98558 1.21406 0.99345 1.00513 0.91400 1.21646 0.96234 0.95173 1.00999 1.21345 0.99536 0.97721 0.94497 1.21250 0.99383 0.99739 0.93751 0.93680 0.87083 0.92808 0.89515 0.87886 0.90493 0.84450 0.82314 0.82276 0.83333 0.87665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.71 9.59 71.98 0.69 -4.02 16 2 C 0.11 3.72 5.77 86.38 0.50 4.22 16 3 N -0.52 -25.66 2.85 -512.56 -1.46 -27.12 16 4 C 0.31 18.36 7.52 133.30 1.00 19.36 16 5 C -0.47 -25.41 9.06 23.13 0.21 -25.20 16 6 H 0.10 4.90 7.39 -2.91 -0.02 4.88 16 7 C 0.03 1.47 5.50 85.36 0.47 1.94 16 8 N -0.79 -45.60 11.93 21.88 0.26 -45.33 16 9 Si 1.01 38.08 29.56 68.60 2.03 40.11 16 10 H -0.25 -8.98 7.11 99.48 0.71 -8.28 16 11 H -0.27 -10.00 7.11 99.48 0.71 -9.29 16 12 H -0.25 -8.99 7.11 99.48 0.71 -8.28 16 13 N -0.39 -25.57 10.49 -55.18 -0.58 -26.15 16 14 N -0.33 -20.01 12.05 -50.90 -0.61 -20.62 16 15 C 0.11 5.41 7.67 135.94 1.04 6.45 16 16 C 0.00 -0.19 5.86 -20.08 -0.12 -0.31 16 17 C -0.14 -4.44 8.59 22.57 0.19 -4.25 16 18 C -0.11 -2.47 10.03 22.23 0.22 -2.24 16 19 C -0.12 -2.58 10.04 22.37 0.22 -2.36 16 20 C -0.11 -2.96 10.03 22.23 0.22 -2.74 16 21 C -0.12 -4.41 9.71 22.57 0.22 -4.19 16 22 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 23 H 0.11 2.21 8.14 -2.38 -0.02 2.19 16 24 H 0.05 1.62 6.93 -2.38 -0.02 1.60 16 25 H 0.09 2.92 7.67 -2.39 -0.02 2.90 16 26 H 0.10 3.07 5.78 -2.39 -0.01 3.06 16 27 H 0.28 14.90 8.29 -92.71 -0.77 14.13 16 28 H 0.14 3.90 3.33 -2.91 -0.01 3.89 16 29 H 0.16 2.33 8.06 -2.91 -0.02 2.31 16 30 H 0.16 2.09 8.06 -2.91 -0.02 2.06 16 31 H 0.15 2.96 8.06 -2.91 -0.02 2.93 16 32 H 0.11 4.23 7.98 -2.91 -0.02 4.21 16 Total: -1.00 -78.28 275.42 5.65 -72.63 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: 1.14 Total: 19.83 kcal Atomic # 6 Polarization: -18.22 SS G_CDS: 4.88 Total: -13.34 kcal Atomic # 7 Polarization: -116.83 SS G_CDS: -2.39 Total: -119.23 kcal Atomic # 14 Polarization: 38.08 SS G_CDS: 2.03 Total: 40.11 kcal Total: -78.28 5.65 -72.63 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259873420.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.561 kcal (2) G-P(sol) polarization free energy of solvation -78.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds