Wall clock time and date at job start Mon Mar 30 2020 05:43:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30832 * 1 3 3 Si 1.86797 * 119.99770 * 2 1 4 4 H 1.48497 * 109.47049 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47403 * 299.99826 * 3 2 1 6 6 H 1.48503 * 109.47061 * 60.00061 * 3 2 1 7 7 C 1.39928 * 120.00189 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00059 * 161.82205 * 7 2 1 9 9 C 1.41408 * 119.99957 * 341.82479 * 7 2 1 10 10 C 1.40794 * 120.20530 * 335.46649 * 9 7 2 11 11 C 1.37647 * 119.88991 * 179.76442 * 10 9 7 12 12 C 1.38523 * 120.32668 * 0.51728 * 11 10 9 13 13 C 1.39298 * 120.42178 * 359.73533 * 12 11 10 14 14 N 1.39684 * 119.95058 * 180.02562 * 13 12 11 15 15 C 1.47346 * 111.00288 * 123.39049 * 14 13 12 16 16 C 1.53937 * 108.26441 * 188.96197 * 15 14 13 17 17 C 1.54134 * 110.96035 * 71.46707 * 16 15 14 18 18 C 1.54144 * 85.28560 * 281.23535 * 17 16 15 19 19 C 1.54356 * 85.57402 * 328.33047 * 18 17 16 20 20 C 1.47351 * 110.99958 * 359.97438 * 14 13 12 21 21 C 1.38318 * 120.09960 * 0.02562 * 13 12 11 22 22 H 0.96999 * 120.00064 * 0.02562 * 1 2 3 23 23 H 1.07998 * 120.05378 * 0.02562 * 10 9 7 24 24 H 1.08001 * 119.84043 * 180.27609 * 11 10 9 25 25 H 1.07997 * 119.79351 * 179.76164 * 12 11 10 26 26 H 1.08999 * 109.70485 * 308.65575 * 15 14 13 27 27 H 1.08996 * 109.69905 * 69.26911 * 15 14 13 28 28 H 1.08998 * 114.86118 * 205.00764 * 16 15 14 29 29 H 1.08989 * 113.90225 * 167.14489 * 17 16 15 30 30 H 1.09000 * 113.90029 * 35.31341 * 17 16 15 31 31 H 1.09007 * 115.66646 * 211.29701 * 18 17 16 32 32 H 1.09002 * 113.92360 * 145.67096 * 19 18 17 33 33 H 1.08991 * 113.92828 * 277.58000 * 19 18 17 34 34 H 1.08998 * 109.70371 * 290.72616 * 20 14 13 35 35 H 1.08994 * 109.70580 * 51.34537 * 20 14 13 36 36 H 1.07995 * 120.16388 * 180.02562 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.7022 1.3464 0.0006 5 1 1.8835 2.3965 -1.2125 6 1 1.8835 2.3964 1.2125 7 6 2.0080 -1.2118 0.0005 8 1 3.0475 -1.2352 -0.2912 9 6 1.3539 -2.4057 0.3831 10 6 0.2280 -2.3574 1.2271 11 6 -0.4066 -3.5232 1.5914 12 6 0.0633 -4.7458 1.1404 13 6 1.1792 -4.8095 0.3092 14 7 1.6443 -6.0476 -0.1402 15 6 1.6933 -6.0906 -1.6123 16 6 1.9922 -7.5380 -2.0429 17 6 0.7745 -8.4497 -1.7948 18 6 1.2329 -8.4474 -0.3231 19 6 2.6618 -8.3207 -0.8932 20 6 0.8125 -7.1456 0.3827 21 6 1.8275 -3.6485 -0.0718 22 1 -0.4850 0.8400 -0.0004 23 1 -0.1396 -1.4069 1.5846 24 1 -1.2729 -3.4849 2.2353 25 1 -0.4390 -5.6555 1.4348 26 1 0.7331 -5.7764 -2.0213 27 1 2.4812 -5.4296 -1.9732 28 1 2.4651 -7.6370 -3.0199 29 1 0.8464 -9.4239 -2.2782 30 1 -0.1850 -7.9594 -1.9591 31 1 1.0177 -9.3557 0.2399 32 1 3.3308 -7.7180 -0.2790 33 1 3.1005 -9.2696 -1.2013 34 1 0.9667 -7.2438 1.4573 35 1 -0.2382 -6.9399 0.1789 36 1 2.6925 -3.6966 -0.7166 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259876009.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:34 Heat of formation + Delta-G solvation = 56.509751 kcal Electronic energy + Delta-G solvation = -17250.229019 eV Core-core repulsion = 14699.736987 eV Total energy + Delta-G solvation = -2550.492032 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.75195 -37.58023 -34.70714 -32.91824 -30.29201 -29.22405 -28.02405 -25.46311 -25.21301 -23.79113 -22.35747 -20.13101 -20.05268 -17.69532 -17.49932 -16.02981 -15.31509 -14.99668 -14.50129 -14.32072 -13.95175 -13.56766 -13.10361 -12.90891 -12.35556 -12.30119 -11.92773 -11.73561 -11.46854 -11.16681 -11.06156 -10.80956 -10.56499 -10.41947 -10.22197 -10.08744 -9.81464 -9.74223 -9.39733 -9.17181 -8.48689 -7.44291 -6.78613 -6.64667 -4.34578 2.78893 3.00643 3.08835 3.14551 3.22883 3.94741 4.37899 4.64111 4.70287 4.80025 4.83206 4.87831 5.39566 5.58361 5.71395 5.76039 5.79461 5.84861 5.97478 6.08318 6.13174 6.19181 6.29282 6.32091 6.43903 6.49998 6.52064 6.93826 6.98906 7.05232 7.17891 7.30399 7.60041 7.81055 7.98913 8.13574 8.15461 8.42315 8.70149 8.93316 9.01790 10.20496 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.042203 B = 0.005644 C = 0.005239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.306054 B = 4959.633594 C = 5343.366409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.077 3.923 3 Si 0.906 3.094 4 H -0.260 1.260 5 H -0.275 1.275 6 H -0.272 1.272 7 C -0.462 4.462 8 H 0.078 0.922 9 C 0.124 3.876 10 C -0.177 4.177 11 C -0.090 4.090 12 C -0.281 4.281 13 C 0.118 3.882 14 N -0.483 5.483 15 C 0.075 3.925 16 C -0.117 4.117 17 C -0.143 4.143 18 C -0.118 4.118 19 C -0.125 4.125 20 C 0.069 3.931 21 C -0.233 4.233 22 H 0.279 0.721 23 H 0.116 0.884 24 H 0.087 0.913 25 H 0.092 0.908 26 H 0.042 0.958 27 H 0.082 0.918 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.063 0.937 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.047 0.953 36 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.241 -10.367 -2.087 10.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.184 1.184 5 H -0.200 1.200 6 H -0.197 1.197 7 C -0.492 4.492 8 H 0.096 0.904 9 C 0.120 3.880 10 C -0.197 4.197 11 C -0.109 4.109 12 C -0.303 4.303 13 C 0.023 3.977 14 N -0.200 5.200 15 C -0.051 4.051 16 C -0.136 4.136 17 C -0.180 4.180 18 C -0.137 4.137 19 C -0.162 4.162 20 C -0.059 4.059 21 C -0.254 4.254 22 H 0.090 0.910 23 H 0.134 0.866 24 H 0.105 0.895 25 H 0.110 0.890 26 H 0.061 0.939 27 H 0.100 0.900 28 H 0.103 0.897 29 H 0.098 0.902 30 H 0.082 0.918 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.091 0.909 34 H 0.096 0.904 35 H 0.065 0.935 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 1.538 -10.307 -1.955 10.603 hybrid contribution -0.540 0.881 -0.274 1.069 sum 0.998 -9.426 -2.229 9.737 Atomic orbital electron populations 1.69853 1.07609 1.29034 1.35384 1.25902 0.94678 1.01288 0.92194 0.86298 0.81088 0.81041 0.78512 1.18370 1.20048 1.19718 1.19585 0.98236 0.91214 1.40130 0.90423 1.17477 0.90804 0.91638 0.88032 1.21292 0.99924 0.96757 1.01747 1.20524 0.98173 0.93031 0.99145 1.20466 1.01121 0.96761 1.11929 1.18484 0.93534 0.87972 0.97748 1.59918 1.49628 1.02283 1.08213 1.22200 1.01048 0.94867 0.87031 1.22888 0.97571 0.94371 0.98739 1.23365 0.98075 0.99717 0.96860 1.22903 0.97715 0.97715 0.95324 1.23014 0.96211 0.99316 0.97689 1.22245 0.95413 0.88926 0.99300 1.20590 1.04331 0.91244 1.09277 0.91003 0.86620 0.89524 0.88971 0.93923 0.89982 0.89712 0.90199 0.91819 0.89837 0.89799 0.90871 0.90366 0.93452 0.88773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.71 10.98 55.55 0.61 -20.10 16 2 C 0.08 1.95 5.13 -17.34 -0.09 1.86 16 3 Si 0.91 18.80 29.60 -169.99 -5.03 13.77 16 4 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 5 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 6 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 7 C -0.46 -12.41 9.05 -37.74 -0.34 -12.76 16 8 H 0.08 2.02 7.91 -52.49 -0.42 1.60 16 9 C 0.12 3.35 5.57 -106.85 -0.60 2.76 16 10 C -0.18 -4.71 8.70 -38.83 -0.34 -5.04 16 11 C -0.09 -2.16 10.02 -39.69 -0.40 -2.55 16 12 C -0.28 -6.43 8.86 -39.08 -0.35 -6.78 16 13 C 0.12 2.70 5.59 -83.86 -0.47 2.24 16 14 N -0.48 -9.25 3.97 -169.30 -0.67 -9.92 16 15 C 0.07 1.28 5.17 -3.09 -0.02 1.27 16 16 C -0.12 -1.59 5.10 -89.14 -0.45 -2.05 16 17 C -0.14 -1.78 7.32 -25.66 -0.19 -1.97 16 18 C -0.12 -1.56 5.10 -89.14 -0.45 -2.02 16 19 C -0.12 -1.63 7.28 -25.43 -0.19 -1.82 16 20 C 0.07 1.13 4.30 -3.09 -0.01 1.11 16 21 C -0.23 -5.85 9.03 -38.68 -0.35 -6.20 16 22 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 23 H 0.12 3.16 6.17 -52.49 -0.32 2.83 16 24 H 0.09 1.87 8.06 -52.49 -0.42 1.44 16 25 H 0.09 1.89 5.78 -52.49 -0.30 1.59 16 26 H 0.04 0.78 8.04 -51.93 -0.42 0.36 16 27 H 0.08 1.45 7.33 -51.93 -0.38 1.07 16 28 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.06 0.85 8.03 -51.93 -0.42 0.43 16 31 H 0.08 0.96 8.14 -51.92 -0.42 0.54 16 32 H 0.08 1.26 7.52 -51.93 -0.39 0.87 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.08 1.28 7.92 -51.93 -0.41 0.87 16 35 H 0.05 0.81 6.74 -51.93 -0.35 0.46 16 36 H 0.09 2.29 7.34 -52.49 -0.39 1.90 16 LS Contribution 283.78 15.07 4.28 4.28 Total: -1.00 -27.50 283.78 -10.10 -37.60 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -5.04 Total: 6.32 kcal Atomic # 6 Polarization: -27.71 SS G_CDS: -4.24 Total: -31.95 kcal Atomic # 7 Polarization: -29.95 SS G_CDS: -0.06 Total: -30.02 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.03 Total: 13.77 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -27.50 -10.10 -37.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259876009.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.106 kcal (2) G-P(sol) polarization free energy of solvation -27.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds