Wall clock time and date at job start Mon Mar 30 2020 05:43:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30832 * 1 3 3 Si 1.86797 * 119.99770 * 2 1 4 4 H 1.48497 * 109.47049 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47403 * 299.99826 * 3 2 1 6 6 H 1.48503 * 109.47061 * 60.00061 * 3 2 1 7 7 C 1.39928 * 120.00189 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00059 * 161.82205 * 7 2 1 9 9 C 1.41408 * 119.99957 * 341.82479 * 7 2 1 10 10 C 1.40794 * 120.20530 * 335.46649 * 9 7 2 11 11 C 1.37647 * 119.88991 * 179.76442 * 10 9 7 12 12 C 1.38523 * 120.32668 * 0.51728 * 11 10 9 13 13 C 1.39298 * 120.42178 * 359.73533 * 12 11 10 14 14 N 1.39684 * 119.95058 * 180.02562 * 13 12 11 15 15 C 1.47346 * 111.00288 * 123.39049 * 14 13 12 16 16 C 1.53937 * 108.26441 * 188.96197 * 15 14 13 17 17 C 1.54134 * 110.96035 * 71.46707 * 16 15 14 18 18 C 1.54144 * 85.28560 * 281.23535 * 17 16 15 19 19 C 1.54356 * 85.57402 * 328.33047 * 18 17 16 20 20 C 1.47351 * 110.99958 * 359.97438 * 14 13 12 21 21 C 1.38318 * 120.09960 * 0.02562 * 13 12 11 22 22 H 0.96999 * 120.00064 * 0.02562 * 1 2 3 23 23 H 1.07998 * 120.05378 * 0.02562 * 10 9 7 24 24 H 1.08001 * 119.84043 * 180.27609 * 11 10 9 25 25 H 1.07997 * 119.79351 * 179.76164 * 12 11 10 26 26 H 1.08999 * 109.70485 * 308.65575 * 15 14 13 27 27 H 1.08996 * 109.69905 * 69.26911 * 15 14 13 28 28 H 1.08998 * 114.86118 * 205.00764 * 16 15 14 29 29 H 1.08989 * 113.90225 * 167.14489 * 17 16 15 30 30 H 1.09000 * 113.90029 * 35.31341 * 17 16 15 31 31 H 1.09007 * 115.66646 * 211.29701 * 18 17 16 32 32 H 1.09002 * 113.92360 * 145.67096 * 19 18 17 33 33 H 1.08991 * 113.92828 * 277.58000 * 19 18 17 34 34 H 1.08998 * 109.70371 * 290.72616 * 20 14 13 35 35 H 1.08994 * 109.70580 * 51.34537 * 20 14 13 36 36 H 1.07995 * 120.16388 * 180.02562 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.7022 1.3464 0.0006 5 1 1.8835 2.3965 -1.2125 6 1 1.8835 2.3964 1.2125 7 6 2.0080 -1.2118 0.0005 8 1 3.0475 -1.2352 -0.2912 9 6 1.3539 -2.4057 0.3831 10 6 0.2280 -2.3574 1.2271 11 6 -0.4066 -3.5232 1.5914 12 6 0.0633 -4.7458 1.1404 13 6 1.1792 -4.8095 0.3092 14 7 1.6443 -6.0476 -0.1402 15 6 1.6933 -6.0906 -1.6123 16 6 1.9922 -7.5380 -2.0429 17 6 0.7745 -8.4497 -1.7948 18 6 1.2329 -8.4474 -0.3231 19 6 2.6618 -8.3207 -0.8932 20 6 0.8125 -7.1456 0.3827 21 6 1.8275 -3.6485 -0.0718 22 1 -0.4850 0.8400 -0.0004 23 1 -0.1396 -1.4069 1.5846 24 1 -1.2729 -3.4849 2.2353 25 1 -0.4390 -5.6555 1.4348 26 1 0.7331 -5.7764 -2.0213 27 1 2.4812 -5.4296 -1.9732 28 1 2.4651 -7.6370 -3.0199 29 1 0.8464 -9.4239 -2.2782 30 1 -0.1850 -7.9594 -1.9591 31 1 1.0177 -9.3557 0.2399 32 1 3.3308 -7.7180 -0.2790 33 1 3.1005 -9.2696 -1.2013 34 1 0.9667 -7.2438 1.4573 35 1 -0.2382 -6.9399 0.1789 36 1 2.6925 -3.6966 -0.7166 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259876009.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:33 Heat of formation + Delta-G solvation = 42.848561 kcal Electronic energy + Delta-G solvation = -17250.821413 eV Core-core repulsion = 14699.736987 eV Total energy + Delta-G solvation = -2551.084426 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.02394 -39.33733 -36.40719 -34.71595 -32.05058 -30.70736 -29.79827 -27.16783 -26.44339 -25.27599 -23.76747 -21.88242 -21.84255 -19.26213 -18.83462 -17.68512 -16.96726 -16.51612 -16.17016 -15.87073 -15.44065 -14.89597 -14.64480 -14.56588 -14.08563 -13.75929 -13.47639 -13.31577 -12.89179 -12.76772 -12.70196 -12.40027 -12.15641 -11.97947 -11.70125 -11.42346 -11.39085 -11.12743 -11.02602 -10.80587 -10.18261 -9.42019 -8.68106 -8.45914 -6.37944 0.95335 1.07242 1.37414 1.49885 1.53446 2.20248 2.67370 2.98099 3.62004 3.66429 3.68721 3.73707 3.81354 4.18439 4.37568 4.50566 4.53727 4.55042 4.64244 4.76821 4.79735 4.92630 5.01519 5.04556 5.05516 5.06958 5.14965 5.26380 5.30593 5.33972 5.38110 5.58389 5.78449 5.93406 6.06447 6.17026 6.32553 6.53072 6.76109 6.93896 7.05188 8.31923 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.042203 B = 0.005644 C = 0.005239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.306054 B = 4959.633594 C = 5343.366409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.037 3.963 3 Si 0.983 3.017 4 H -0.259 1.259 5 H -0.264 1.264 6 H -0.263 1.263 7 C -0.499 4.499 8 H 0.073 0.927 9 C 0.096 3.904 10 C -0.207 4.207 11 C -0.090 4.090 12 C -0.283 4.283 13 C 0.125 3.875 14 N -0.488 5.488 15 C 0.073 3.927 16 C -0.119 4.119 17 C -0.131 4.131 18 C -0.115 4.115 19 C -0.118 4.118 20 C 0.063 3.937 21 C -0.254 4.254 22 H 0.289 0.711 23 H 0.100 0.900 24 H 0.111 0.889 25 H 0.120 0.880 26 H 0.025 0.975 27 H 0.067 0.933 28 H 0.106 0.894 29 H 0.112 0.888 30 H 0.052 0.948 31 H 0.111 0.889 32 H 0.059 0.941 33 H 0.106 0.894 34 H 0.078 0.922 35 H 0.041 0.959 36 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.390 -12.227 -2.448 12.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.178 4.178 3 Si 0.804 3.196 4 H -0.183 1.183 5 H -0.188 1.188 6 H -0.187 1.187 7 C -0.529 4.529 8 H 0.091 0.909 9 C 0.093 3.907 10 C -0.227 4.227 11 C -0.109 4.109 12 C -0.305 4.305 13 C 0.029 3.971 14 N -0.205 5.205 15 C -0.053 4.053 16 C -0.138 4.138 17 C -0.168 4.168 18 C -0.134 4.134 19 C -0.156 4.156 20 C -0.064 4.064 21 C -0.276 4.276 22 H 0.099 0.901 23 H 0.118 0.882 24 H 0.129 0.871 25 H 0.138 0.862 26 H 0.044 0.956 27 H 0.086 0.914 28 H 0.124 0.876 29 H 0.131 0.869 30 H 0.071 0.929 31 H 0.129 0.871 32 H 0.078 0.922 33 H 0.124 0.876 34 H 0.096 0.904 35 H 0.059 0.941 36 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 1.680 -12.200 -2.320 12.532 hybrid contribution -0.610 1.335 -0.166 1.477 sum 1.070 -10.865 -2.486 11.197 Atomic orbital electron populations 1.69898 1.09071 1.30551 1.35457 1.26771 0.95473 1.04532 0.91035 0.85151 0.79367 0.76053 0.79071 1.18278 1.18850 1.18710 1.19816 0.98351 0.92564 1.42137 0.90924 1.17836 0.91558 0.92653 0.88671 1.21245 1.01010 0.97086 1.03351 1.20829 0.98504 0.92710 0.98839 1.20810 1.00932 0.97415 1.11320 1.18693 0.92694 0.89071 0.96690 1.59844 1.49847 1.01356 1.09438 1.22211 0.99713 0.97783 0.85609 1.22884 0.99080 0.91809 0.99997 1.23374 0.96673 1.00645 0.96135 1.22899 0.97870 0.96643 0.95946 1.23043 0.95638 1.00187 0.96724 1.22368 0.94634 0.89655 0.99748 1.20658 1.04931 0.91845 1.10195 0.90080 0.88154 0.87064 0.86183 0.95614 0.91410 0.87625 0.86932 0.92947 0.87064 0.92202 0.87616 0.90410 0.94114 0.89223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.23 10.98 21.82 0.24 -43.99 16 2 C 0.04 1.92 5.13 85.25 0.44 2.35 16 3 Si 0.98 39.12 29.60 68.60 2.03 41.15 16 4 H -0.26 -10.16 7.11 99.48 0.71 -9.46 16 5 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 6 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 7 C -0.50 -28.08 9.05 23.46 0.21 -27.87 16 8 H 0.07 3.98 7.91 -2.91 -0.02 3.96 16 9 C 0.10 5.45 5.57 -21.31 -0.12 5.33 16 10 C -0.21 -11.41 8.70 22.76 0.20 -11.22 16 11 C -0.09 -4.37 10.02 22.20 0.22 -4.15 16 12 C -0.28 -12.91 8.86 22.59 0.20 -12.71 16 13 C 0.13 5.83 5.59 38.16 0.21 6.04 16 14 N -0.49 -18.57 3.97 -689.55 -2.74 -21.31 16 15 C 0.07 2.50 5.17 86.53 0.45 2.94 16 16 C -0.12 -2.95 5.10 -9.83 -0.05 -3.00 16 17 C -0.13 -2.78 7.32 31.29 0.23 -2.55 16 18 C -0.12 -2.65 5.10 -9.83 -0.05 -2.70 16 19 C -0.12 -2.71 7.28 31.44 0.23 -2.48 16 20 C 0.06 1.95 4.30 86.53 0.37 2.33 16 21 C -0.25 -13.36 9.03 22.86 0.21 -13.16 16 22 H 0.29 13.87 8.30 -92.71 -0.77 13.10 16 23 H 0.10 5.74 6.17 -2.91 -0.02 5.72 16 24 H 0.11 4.73 8.06 -2.91 -0.02 4.71 16 25 H 0.12 4.74 5.78 -2.91 -0.02 4.72 16 26 H 0.03 0.96 8.04 -2.39 -0.02 0.94 16 27 H 0.07 2.47 7.33 -2.39 -0.02 2.45 16 28 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 29 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.05 1.25 8.03 -2.39 -0.02 1.23 16 31 H 0.11 2.02 8.14 -2.38 -0.02 2.00 16 32 H 0.06 1.68 7.52 -2.39 -0.02 1.66 16 33 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.08 2.41 7.92 -2.39 -0.02 2.39 16 35 H 0.04 1.33 6.74 -2.39 -0.02 1.31 16 36 H 0.09 4.62 7.34 -2.91 -0.02 4.60 16 Total: -1.00 -61.82 283.78 3.34 -58.48 By element: Atomic # 1 Polarization: 25.45 SS G_CDS: 1.06 Total: 26.51 kcal Atomic # 6 Polarization: -63.59 SS G_CDS: 2.75 Total: -60.84 kcal Atomic # 7 Polarization: -62.80 SS G_CDS: -2.50 Total: -65.30 kcal Atomic # 14 Polarization: 39.12 SS G_CDS: 2.03 Total: 41.15 kcal Total: -61.82 3.34 -58.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259876009.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.327 kcal (2) G-P(sol) polarization free energy of solvation -61.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.479 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds