Wall clock time and date at job start Mon Mar 30 2020 05:35:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30694 * 1 3 3 Si 1.86795 * 120.00118 * 2 1 4 4 H 1.48494 * 109.47071 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47081 * 119.99744 * 3 2 1 6 6 H 1.48501 * 109.47213 * 240.00116 * 3 2 1 7 7 C 1.40306 * 119.99681 * 179.72220 * 2 1 3 8 8 H 1.08002 * 120.00071 * 179.97438 * 7 2 1 9 9 C 1.40074 * 120.00583 * 0.02562 * 7 2 1 10 10 C 1.35028 * 120.00267 * 179.97438 * 9 7 2 11 11 C 1.50707 * 119.99845 * 180.02562 * 10 9 7 12 12 N 1.46897 * 109.47196 * 125.00316 * 11 10 9 13 13 C 1.47166 * 110.99808 * 189.05031 * 12 11 10 14 14 C 1.52893 * 108.49633 * 165.29200 * 13 12 11 15 15 C 1.50723 * 109.94665 * 50.41887 * 14 13 12 16 16 C 1.38680 * 118.48333 * 163.20338 * 15 14 13 17 17 C 1.38032 * 120.34896 * 179.78183 * 16 15 14 18 18 C 1.38257 * 119.82478 * 0.02562 * 17 16 15 19 19 C 1.38016 * 119.87212 * 0.07514 * 18 17 16 20 20 C 1.37835 * 121.66270 * 343.12593 * 15 14 13 21 21 C 1.46628 * 111.00474 * 66.04242 * 12 11 10 22 22 H 0.97005 * 120.00041 * 179.97438 * 1 2 3 23 23 H 1.08002 * 119.99348 * 0.02562 * 9 7 2 24 24 H 1.07992 * 120.00394 * 359.97438 * 10 9 7 25 25 H 1.09000 * 109.46799 * 244.99935 * 11 10 9 26 26 H 1.09004 * 109.47306 * 4.99560 * 11 10 9 27 27 H 1.08995 * 109.63118 * 284.98879 * 13 12 11 28 28 H 1.08999 * 109.62996 * 45.59262 * 13 12 11 29 29 H 1.08991 * 109.39765 * 290.26909 * 14 13 12 30 30 H 1.09003 * 109.30733 * 170.50584 * 14 13 12 31 31 H 1.08000 * 119.82236 * 359.80790 * 16 15 14 32 32 H 1.07997 * 120.08679 * 180.02562 * 17 16 15 33 33 H 1.08006 * 120.06513 * 180.09383 * 18 17 16 34 34 H 1.08003 * 119.81173 * 179.97438 * 19 18 17 35 35 H 1.08998 * 109.26603 * 296.15450 * 21 12 11 36 36 H 1.09005 * 109.26549 * 55.61446 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2409 1.6177 0.0000 4 1 1.2760 2.7464 -0.0006 5 1 3.0946 1.6963 1.2125 6 1 3.0947 1.6964 -1.2125 7 6 2.0084 -1.2151 0.0059 8 1 3.0884 -1.2152 0.0055 9 6 1.3081 -2.4282 0.0112 10 6 1.9832 -3.5976 0.0164 11 6 1.2297 -4.9027 0.0215 12 7 1.6732 -5.7287 -1.1093 13 6 0.8148 -6.9138 -1.2654 14 6 1.0785 -7.5259 -2.6414 15 6 2.5602 -7.7117 -2.8461 16 6 2.9870 -8.5608 -3.8561 17 6 4.3350 -8.7557 -4.0803 18 6 5.2645 -8.1014 -3.2933 19 6 4.8408 -7.2577 -2.2866 20 6 3.4864 -7.0610 -2.0597 21 6 3.0732 -6.1336 -0.9472 22 1 -0.4850 -0.8401 -0.0004 23 1 0.2281 -2.4281 0.0104 24 1 3.0631 -3.5977 0.0160 25 1 1.4238 -5.4306 0.9552 26 1 0.1614 -4.7059 -0.0692 27 1 1.0509 -7.6419 -0.4894 28 1 -0.2322 -6.6201 -1.1899 29 1 0.6868 -6.8637 -3.4133 30 1 0.5801 -8.4931 -2.7072 31 1 2.2608 -9.0719 -4.4707 32 1 4.6626 -9.4176 -4.8682 33 1 6.3203 -8.2498 -3.4663 34 1 5.5678 -6.7474 -1.6722 35 1 3.7079 -5.2476 -0.9628 36 1 3.1917 -6.6434 0.0090 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259880831.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:02 Heat of formation + Delta-G solvation = 21.409513 kcal Electronic energy + Delta-G solvation = -16501.277317 eV Core-core repulsion = 13949.263224 eV Total energy + Delta-G solvation = -2552.014093 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.85638 -36.97618 -34.59546 -32.95893 -31.79505 -30.40198 -28.96152 -26.60246 -24.47316 -23.19025 -22.15026 -21.88095 -19.33331 -18.83144 -16.98574 -16.32877 -15.59479 -15.25448 -14.51620 -14.40656 -14.11321 -13.95436 -13.46981 -13.25506 -12.96217 -12.51885 -12.40191 -11.86902 -11.74562 -11.36925 -11.21903 -11.14653 -10.74324 -10.45170 -10.33386 -10.21351 -9.79521 -9.47400 -9.09012 -8.69471 -8.41475 -7.89545 -7.56861 -7.10133 -4.27984 1.48221 1.49708 3.11765 3.21478 3.41575 3.83471 3.86834 4.10986 4.56287 4.85616 4.89776 5.07054 5.11530 5.31969 5.42483 5.50270 5.56508 5.66726 5.67544 5.82547 5.99006 6.02038 6.11339 6.15167 6.24512 6.37736 6.42014 6.58217 6.59822 6.81038 6.83689 6.98195 7.12728 7.63875 7.71965 7.82355 7.91265 8.23261 8.55890 9.02689 9.20785 10.22897 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.032972 B = 0.004493 C = 0.004177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.999172 B = 6230.146929 C = 6701.688899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.027 3.973 3 Si 1.077 2.923 4 H -0.275 1.275 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.520 4.520 8 H 0.065 0.935 9 C 0.039 3.961 10 C -0.413 4.413 11 C 0.136 3.864 12 N -0.526 5.526 13 C 0.047 3.953 14 C -0.075 4.075 15 C -0.068 4.068 16 C -0.124 4.124 17 C -0.129 4.129 18 C -0.127 4.127 19 C -0.118 4.118 20 C -0.067 4.067 21 C 0.097 3.903 22 H 0.286 0.714 23 H 0.062 0.938 24 H 0.075 0.925 25 H 0.003 0.997 26 H 0.053 0.947 27 H 0.029 0.971 28 H 0.075 0.925 29 H 0.083 0.917 30 H 0.071 0.929 31 H 0.118 0.882 32 H 0.117 0.883 33 H 0.118 0.882 34 H 0.120 0.880 35 H 0.093 0.907 36 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.756 -14.000 -4.945 15.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.190 4.190 3 Si 0.901 3.099 4 H -0.200 1.200 5 H -0.203 1.203 6 H -0.202 1.202 7 C -0.550 4.550 8 H 0.084 0.916 9 C 0.017 3.983 10 C -0.436 4.436 11 C 0.010 3.990 12 N -0.250 5.250 13 C -0.082 4.082 14 C -0.113 4.113 15 C -0.068 4.068 16 C -0.142 4.142 17 C -0.147 4.147 18 C -0.145 4.145 19 C -0.136 4.136 20 C -0.067 4.067 21 C -0.031 4.031 22 H 0.099 0.901 23 H 0.080 0.920 24 H 0.093 0.907 25 H 0.021 0.979 26 H 0.072 0.928 27 H 0.047 0.953 28 H 0.093 0.907 29 H 0.101 0.899 30 H 0.090 0.910 31 H 0.136 0.864 32 H 0.135 0.865 33 H 0.136 0.864 34 H 0.138 0.862 35 H 0.112 0.888 36 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 4.433 -12.041 -5.359 13.905 hybrid contribution 0.301 -2.268 0.630 2.372 sum 4.734 -14.308 -4.729 15.795 Atomic orbital electron populations 1.70507 1.07960 1.32805 1.34554 1.27208 0.96028 1.04794 0.90966 0.83451 0.75231 0.73456 0.77760 1.20016 1.20253 1.20219 1.20459 0.96165 0.92361 1.46009 0.91645 1.19781 0.95259 0.93095 0.90137 1.21635 0.96212 0.90847 1.34902 1.20586 0.97743 0.92999 0.87632 1.62590 1.00890 1.16738 1.44811 1.22154 0.98165 0.92309 0.95553 1.20551 0.91797 1.00388 0.98517 1.19631 0.95665 0.96119 0.95434 1.21063 0.95842 0.99230 0.98058 1.20999 0.93246 1.00518 0.99922 1.20997 0.99259 0.97870 0.96334 1.21076 0.95113 0.99016 0.98428 1.19823 0.92956 0.96738 0.97215 1.20895 0.91739 0.96930 0.93503 0.90118 0.92034 0.90686 0.97920 0.92840 0.95309 0.90677 0.89906 0.91046 0.86437 0.86483 0.86372 0.86150 0.88847 0.94417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -23.17 13.59 55.57 0.76 -22.41 16 2 C 0.03 0.74 5.50 -17.26 -0.09 0.64 16 3 Si 1.08 22.80 29.94 -169.99 -5.09 17.71 16 4 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 5 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 6 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 7 C -0.52 -14.64 9.05 -38.12 -0.35 -14.99 16 8 H 0.07 1.83 7.85 -52.49 -0.41 1.42 16 9 C 0.04 1.06 8.95 -40.03 -0.36 0.70 16 10 C -0.41 -10.47 8.94 -35.45 -0.32 -10.79 16 11 C 0.14 2.91 5.41 -4.97 -0.03 2.88 16 12 N -0.53 -10.16 4.68 -237.64 -1.11 -11.27 16 13 C 0.05 0.73 5.57 -3.73 -0.02 0.71 16 14 C -0.08 -1.04 5.95 -27.93 -0.17 -1.21 16 15 C -0.07 -1.02 5.77 -104.60 -0.60 -1.62 16 16 C -0.12 -1.59 9.66 -39.49 -0.38 -1.97 16 17 C -0.13 -1.54 10.05 -39.65 -0.40 -1.93 16 18 C -0.13 -1.56 10.05 -39.66 -0.40 -1.96 16 19 C -0.12 -1.67 9.65 -39.48 -0.38 -2.05 16 20 C -0.07 -1.08 5.79 -104.63 -0.61 -1.68 16 21 C 0.10 1.74 4.96 -5.17 -0.03 1.71 16 22 H 0.29 7.93 6.54 -40.82 -0.27 7.67 16 23 H 0.06 1.69 6.07 -52.49 -0.32 1.37 16 24 H 0.07 1.95 7.02 -52.49 -0.37 1.59 16 25 H 0.00 0.06 8.07 -51.93 -0.42 -0.36 16 26 H 0.05 1.14 7.61 -51.93 -0.40 0.74 16 27 H 0.03 0.44 8.05 -51.93 -0.42 0.02 16 28 H 0.07 1.12 7.87 -51.93 -0.41 0.71 16 29 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 32 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 33 H 0.12 1.16 8.06 -52.48 -0.42 0.73 16 34 H 0.12 1.52 8.06 -52.48 -0.42 1.10 16 35 H 0.09 1.80 6.77 -51.93 -0.35 1.45 16 36 H 0.04 0.66 8.08 -51.93 -0.42 0.24 16 LS Contribution 297.26 15.07 4.48 4.48 Total: -1.00 -29.30 297.26 -10.20 -39.50 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -5.11 Total: 3.55 kcal Atomic # 6 Polarization: -27.43 SS G_CDS: -4.12 Total: -31.55 kcal Atomic # 7 Polarization: -33.33 SS G_CDS: -0.36 Total: -33.69 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -5.09 Total: 17.71 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -29.30 -10.20 -39.50 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259880831.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.907 kcal (2) G-P(sol) polarization free energy of solvation -29.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds