Wall clock time and date at job start Mon Mar 30 2020 05:35:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30694 * 1 3 3 Si 1.86795 * 120.00118 * 2 1 4 4 H 1.48494 * 109.47071 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47081 * 119.99744 * 3 2 1 6 6 H 1.48501 * 109.47213 * 240.00116 * 3 2 1 7 7 C 1.40306 * 119.99681 * 179.72220 * 2 1 3 8 8 H 1.08002 * 120.00071 * 179.97438 * 7 2 1 9 9 C 1.40074 * 120.00583 * 0.02562 * 7 2 1 10 10 C 1.35028 * 120.00267 * 179.97438 * 9 7 2 11 11 C 1.50707 * 119.99845 * 180.02562 * 10 9 7 12 12 N 1.46897 * 109.47196 * 125.00316 * 11 10 9 13 13 C 1.47166 * 110.99808 * 189.05031 * 12 11 10 14 14 C 1.52893 * 108.49633 * 165.29200 * 13 12 11 15 15 C 1.50723 * 109.94665 * 50.41887 * 14 13 12 16 16 C 1.38680 * 118.48333 * 163.20338 * 15 14 13 17 17 C 1.38032 * 120.34896 * 179.78183 * 16 15 14 18 18 C 1.38257 * 119.82478 * 0.02562 * 17 16 15 19 19 C 1.38016 * 119.87212 * 0.07514 * 18 17 16 20 20 C 1.37835 * 121.66270 * 343.12593 * 15 14 13 21 21 C 1.46628 * 111.00474 * 66.04242 * 12 11 10 22 22 H 0.97005 * 120.00041 * 179.97438 * 1 2 3 23 23 H 1.08002 * 119.99348 * 0.02562 * 9 7 2 24 24 H 1.07992 * 120.00394 * 359.97438 * 10 9 7 25 25 H 1.09000 * 109.46799 * 244.99935 * 11 10 9 26 26 H 1.09004 * 109.47306 * 4.99560 * 11 10 9 27 27 H 1.08995 * 109.63118 * 284.98879 * 13 12 11 28 28 H 1.08999 * 109.62996 * 45.59262 * 13 12 11 29 29 H 1.08991 * 109.39765 * 290.26909 * 14 13 12 30 30 H 1.09003 * 109.30733 * 170.50584 * 14 13 12 31 31 H 1.08000 * 119.82236 * 359.80790 * 16 15 14 32 32 H 1.07997 * 120.08679 * 180.02562 * 17 16 15 33 33 H 1.08006 * 120.06513 * 180.09383 * 18 17 16 34 34 H 1.08003 * 119.81173 * 179.97438 * 19 18 17 35 35 H 1.08998 * 109.26603 * 296.15450 * 21 12 11 36 36 H 1.09005 * 109.26549 * 55.61446 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2409 1.6177 0.0000 4 1 1.2760 2.7464 -0.0006 5 1 3.0946 1.6963 1.2125 6 1 3.0947 1.6964 -1.2125 7 6 2.0084 -1.2151 0.0059 8 1 3.0884 -1.2152 0.0055 9 6 1.3081 -2.4282 0.0112 10 6 1.9832 -3.5976 0.0164 11 6 1.2297 -4.9027 0.0215 12 7 1.6732 -5.7287 -1.1093 13 6 0.8148 -6.9138 -1.2654 14 6 1.0785 -7.5259 -2.6414 15 6 2.5602 -7.7117 -2.8461 16 6 2.9870 -8.5608 -3.8561 17 6 4.3350 -8.7557 -4.0803 18 6 5.2645 -8.1014 -3.2933 19 6 4.8408 -7.2577 -2.2866 20 6 3.4864 -7.0610 -2.0597 21 6 3.0732 -6.1336 -0.9472 22 1 -0.4850 -0.8401 -0.0004 23 1 0.2281 -2.4281 0.0104 24 1 3.0631 -3.5977 0.0160 25 1 1.4238 -5.4306 0.9552 26 1 0.1614 -4.7059 -0.0692 27 1 1.0509 -7.6419 -0.4894 28 1 -0.2322 -6.6201 -1.1899 29 1 0.6868 -6.8637 -3.4133 30 1 0.5801 -8.4931 -2.7072 31 1 2.2608 -9.0719 -4.4707 32 1 4.6626 -9.4176 -4.8682 33 1 6.3203 -8.2498 -3.4663 34 1 5.5678 -6.7474 -1.6722 35 1 3.7079 -5.2476 -0.9628 36 1 3.1917 -6.6434 0.0090 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259880831.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:02 Heat of formation + Delta-G solvation = 5.511532 kcal Electronic energy + Delta-G solvation = -16501.966705 eV Core-core repulsion = 13949.263224 eV Total energy + Delta-G solvation = -2552.703481 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.00133 -38.33636 -36.60710 -34.33253 -33.17812 -31.98394 -30.14971 -28.33191 -26.05818 -24.60766 -23.59966 -23.02003 -20.97337 -20.34258 -19.01532 -17.49650 -16.88022 -16.57938 -16.07207 -15.85285 -15.53024 -15.43160 -14.88829 -14.76881 -14.16736 -14.01416 -13.58721 -13.16782 -13.06520 -12.93190 -12.87551 -12.36792 -12.33594 -12.01295 -11.83374 -11.69455 -11.47060 -11.39038 -11.11250 -9.94931 -9.72176 -9.48338 -9.26129 -9.13558 -6.44727 0.44486 0.47558 1.32282 1.49657 1.79787 1.94934 2.34473 2.83010 3.02172 3.37819 3.74131 3.78665 4.02791 4.13476 4.23981 4.28968 4.35531 4.41103 4.51084 4.54436 4.63601 4.71751 4.78747 4.83197 4.85481 5.00322 5.06857 5.12056 5.24956 5.57326 5.59873 5.60959 5.69706 5.70495 6.06012 6.10175 6.19964 6.25527 6.43744 6.88921 7.06883 8.09601 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.032972 B = 0.004493 C = 0.004177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.999172 B = 6230.146929 C = 6701.688899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.850 5.850 2 C -0.010 4.010 3 Si 1.127 2.873 4 H -0.268 1.268 5 H -0.260 1.260 6 H -0.263 1.263 7 C -0.555 4.555 8 H 0.058 0.942 9 C 0.009 3.991 10 C -0.395 4.395 11 C 0.141 3.859 12 N -0.543 5.543 13 C 0.045 3.955 14 C -0.070 4.070 15 C -0.087 4.087 16 C -0.126 4.126 17 C -0.124 4.124 18 C -0.127 4.127 19 C -0.132 4.132 20 C -0.097 4.097 21 C 0.103 3.897 22 H 0.274 0.726 23 H 0.056 0.944 24 H 0.062 0.938 25 H 0.012 0.988 26 H 0.053 0.947 27 H 0.036 0.964 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.104 0.896 31 H 0.145 0.855 32 H 0.151 0.849 33 H 0.146 0.854 34 H 0.124 0.876 35 H 0.066 0.934 36 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.561 -15.511 -6.318 17.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C -0.221 4.221 3 Si 0.944 3.056 4 H -0.192 1.192 5 H -0.184 1.184 6 H -0.187 1.187 7 C -0.585 4.585 8 H 0.076 0.924 9 C -0.012 4.012 10 C -0.417 4.417 11 C 0.015 3.985 12 N -0.268 5.268 13 C -0.082 4.082 14 C -0.107 4.107 15 C -0.087 4.087 16 C -0.143 4.143 17 C -0.142 4.142 18 C -0.145 4.145 19 C -0.151 4.151 20 C -0.097 4.097 21 C -0.025 4.025 22 H 0.086 0.914 23 H 0.074 0.926 24 H 0.081 0.919 25 H 0.030 0.970 26 H 0.072 0.928 27 H 0.054 0.946 28 H 0.100 0.900 29 H 0.095 0.905 30 H 0.122 0.878 31 H 0.162 0.838 32 H 0.168 0.832 33 H 0.163 0.837 34 H 0.142 0.858 35 H 0.084 0.916 36 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 5.234 -13.596 -6.734 16.050 hybrid contribution 0.101 -2.003 1.021 2.251 sum 5.335 -15.600 -5.713 17.449 Atomic orbital electron populations 1.70623 1.08615 1.32067 1.36339 1.28743 0.96073 1.08022 0.89288 0.82869 0.74479 0.69309 0.78988 1.19211 1.18448 1.18719 1.20669 0.95973 0.93627 1.48227 0.92368 1.19927 0.95171 0.93972 0.92093 1.21907 0.95844 0.92320 1.31670 1.20420 0.97112 0.91817 0.89136 1.62414 1.02221 1.18761 1.43378 1.22266 0.97718 0.91001 0.97261 1.20559 0.91799 1.01671 0.96707 1.19853 0.95852 0.96851 0.96184 1.21387 0.97055 0.98490 0.97412 1.21453 0.92802 0.99966 0.99972 1.21358 1.00998 0.96807 0.95325 1.21254 0.94542 0.99837 0.99434 1.19784 0.94290 0.97854 0.97790 1.20757 0.90498 0.96405 0.94826 0.91387 0.92606 0.91937 0.97012 0.92810 0.94609 0.90006 0.90478 0.87805 0.83764 0.83165 0.83660 0.85822 0.91554 0.94549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -48.36 13.59 21.89 0.30 -48.06 16 2 C -0.01 -0.53 5.50 85.37 0.47 -0.06 16 3 Si 1.13 45.66 29.94 68.60 2.05 47.72 16 4 H -0.27 -10.45 7.11 99.48 0.71 -9.74 16 5 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 6 H -0.26 -9.97 7.11 99.48 0.71 -9.27 16 7 C -0.55 -32.27 9.05 23.22 0.21 -32.06 16 8 H 0.06 3.36 7.85 -2.91 -0.02 3.34 16 9 C 0.01 0.54 8.95 21.98 0.20 0.73 16 10 C -0.40 -20.69 8.94 24.95 0.22 -20.47 16 11 C 0.14 6.16 5.41 85.56 0.46 6.62 16 12 N -0.54 -21.16 4.68 -905.76 -4.23 -25.40 16 13 C 0.05 1.38 5.57 86.22 0.48 1.86 16 14 C -0.07 -1.81 5.95 29.82 0.18 -1.63 16 15 C -0.09 -2.45 5.77 -19.85 -0.11 -2.56 16 16 C -0.13 -2.80 9.66 22.33 0.22 -2.59 16 17 C -0.12 -2.49 10.05 22.23 0.22 -2.27 16 18 C -0.13 -2.79 10.05 22.22 0.22 -2.57 16 19 C -0.13 -3.63 9.65 22.34 0.22 -3.41 16 20 C -0.10 -3.07 5.79 -19.87 -0.12 -3.19 16 21 C 0.10 3.77 4.96 85.58 0.42 4.20 16 22 H 0.27 15.81 6.54 -92.70 -0.61 15.20 16 23 H 0.06 3.21 6.07 -2.91 -0.02 3.19 16 24 H 0.06 3.40 7.02 -2.91 -0.02 3.38 16 25 H 0.01 0.50 8.07 -2.39 -0.02 0.48 16 26 H 0.05 2.32 7.61 -2.39 -0.02 2.30 16 27 H 0.04 1.04 8.05 -2.39 -0.02 1.02 16 28 H 0.08 2.35 7.87 -2.39 -0.02 2.33 16 29 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 30 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.14 2.38 8.06 -2.91 -0.02 2.36 16 32 H 0.15 2.01 8.06 -2.91 -0.02 1.99 16 33 H 0.15 2.33 8.06 -2.91 -0.02 2.31 16 34 H 0.12 3.14 8.06 -2.91 -0.02 3.12 16 35 H 0.07 2.71 6.77 -2.39 -0.02 2.69 16 36 H 0.04 1.30 8.08 -2.38 -0.02 1.28 16 Total: -1.00 -64.80 297.26 2.62 -62.18 By element: Atomic # 1 Polarization: 19.74 SS G_CDS: 1.21 Total: 20.95 kcal Atomic # 6 Polarization: -60.68 SS G_CDS: 3.29 Total: -57.39 kcal Atomic # 7 Polarization: -69.52 SS G_CDS: -3.94 Total: -73.46 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.05 Total: 47.72 kcal Total: -64.80 2.62 -62.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259880831.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.688 kcal (2) G-P(sol) polarization free energy of solvation -64.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds