Wall clock time and date at job start Mon Mar 30 2020 06:13:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.34238 * 126.50435 * 2 1 4 4 C 1.50700 * 125.03294 * 0.04741 * 3 2 1 5 5 N 1.36831 * 109.92986 * 180.02562 * 3 2 1 6 6 C 1.46495 * 125.06009 * 179.97438 * 5 3 2 7 7 C 1.37690 * 109.87308 * 359.97438 * 5 3 2 8 8 C 1.39129 * 133.50724 * 180.02562 * 7 5 3 9 9 C 1.37745 * 119.77529 * 180.21085 * 8 7 5 10 10 C 1.50698 * 119.66351 * 179.74542 * 9 8 7 11 11 C 1.50703 * 109.47189 * 89.99734 * 10 9 8 12 12 H 1.07991 * 120.00109 * 0.02562 * 11 10 9 13 13 C 1.37878 * 119.99658 * 179.97438 * 11 10 9 14 14 N 1.31515 * 120.00630 * 359.97438 * 13 11 10 15 15 Si 1.86810 * 119.99638 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.46951 * 0.02562 * 15 13 11 17 17 H 1.48502 * 109.47049 * 119.99855 * 15 13 11 18 18 H 1.48491 * 109.47209 * 240.00044 * 15 13 11 19 19 C 1.38833 * 120.66926 * 359.49037 * 9 8 7 20 20 C 1.36619 * 120.52540 * 0.51093 * 19 9 8 21 21 C 1.39630 * 119.76480 * 359.74998 * 20 19 9 22 22 H 1.09000 * 109.46891 * 89.97813 * 1 2 3 23 23 H 1.09001 * 109.47294 * 209.97832 * 1 2 3 24 24 H 1.08996 * 109.46577 * 329.98289 * 1 2 3 25 25 H 1.09000 * 109.47407 * 269.98142 * 4 3 2 26 26 H 1.09003 * 109.46965 * 29.98367 * 4 3 2 27 27 H 1.09000 * 109.46778 * 149.97880 * 4 3 2 28 28 H 1.09000 * 109.47352 * 269.99643 * 6 5 3 29 29 H 1.08993 * 109.47159 * 29.99895 * 6 5 3 30 30 H 1.09004 * 109.46670 * 149.99917 * 6 5 3 31 31 H 1.08002 * 120.10881 * 359.92801 * 8 7 5 32 32 H 1.09004 * 109.47349 * 209.99729 * 10 9 8 33 33 H 1.09004 * 109.47296 * 329.99757 * 10 9 8 34 34 H 0.96995 * 119.99936 * 179.97438 * 14 13 11 35 35 H 1.08001 * 119.73338 * 180.26414 * 19 9 8 36 36 H 1.08001 * 120.11528 * 179.72939 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3056 1.0790 0.0000 4 6 1.8284 2.5085 0.0010 5 7 3.6171 0.6887 -0.0006 6 6 4.7657 1.5979 -0.0013 7 6 3.6963 -0.6859 -0.0004 8 6 4.7588 -1.5841 -0.0003 9 6 4.5094 -2.9388 -0.0045 10 6 5.6622 -3.9094 -0.0102 11 6 6.0494 -4.2378 1.4087 12 1 5.5140 -3.7890 2.2322 13 6 7.0865 -5.1122 1.6554 14 7 7.7376 -5.6600 0.6526 15 14 7.5660 -5.5199 3.4143 16 1 6.6841 -4.7795 4.3520 17 1 7.4161 -6.9796 3.6425 18 1 8.9786 -5.1251 3.6464 19 6 3.2068 -3.4190 0.0018 20 6 2.1486 -2.5549 0.0018 21 6 2.3784 -1.1776 0.0007 22 1 -0.3633 0.0004 -1.0277 23 1 -0.3634 -0.8902 0.5135 24 1 -0.3632 0.8898 0.5141 25 1 1.7129 2.8537 -1.0264 26 1 0.8693 2.5709 0.5153 27 1 2.5577 3.1346 0.5150 28 1 5.0501 1.8233 -1.0291 29 1 4.4985 2.5213 0.5125 30 1 5.6032 1.1257 0.5123 31 1 5.7757 -1.2203 -0.0016 32 1 5.3658 -4.8225 -0.5266 33 1 6.5123 -3.4608 -0.5243 34 1 8.4674 -6.2748 0.8262 35 1 3.0286 -4.4842 0.0027 36 1 1.1380 -2.9357 0.0023 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259897577.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:58 Heat of formation + Delta-G solvation = 38.689517 kcal Electronic energy + Delta-G solvation = -16792.252653 eV Core-core repulsion = 14240.987877 eV Total energy + Delta-G solvation = -2551.264776 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.95017 -37.02181 -33.71305 -33.08595 -31.24946 -29.98716 -28.82238 -28.03148 -25.82471 -24.20916 -22.53217 -21.38903 -19.91563 -18.30895 -16.29862 -16.14955 -15.89374 -15.32247 -14.62649 -14.10057 -13.70201 -13.43215 -13.16863 -13.01558 -12.87028 -12.53041 -12.47354 -12.06623 -12.04506 -11.89949 -11.53871 -11.20035 -10.91903 -10.70485 -10.52203 -10.40302 -10.18668 -9.48681 -9.35395 -8.71155 -8.39591 -7.37779 -6.91038 -6.00541 -4.04299 1.77450 2.35509 3.05625 3.14715 3.31081 3.38659 3.44517 4.43634 4.68138 4.83386 4.92178 5.08096 5.26296 5.33204 5.36985 5.40725 5.46141 5.51569 5.61328 5.74003 5.86012 5.91551 6.01628 6.12707 6.18106 6.26834 6.46850 6.64442 6.85770 7.19637 7.29119 7.34652 7.39231 7.57643 7.73409 7.89831 7.95482 7.96649 8.37042 9.01519 9.59244 11.08826 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.032447 B = 0.005475 C = 0.005132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.744333 B = 5113.334462 C = 5454.983700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.175 4.175 3 C 0.056 3.944 4 C -0.086 4.086 5 N -0.489 5.489 6 C 0.081 3.919 7 C 0.104 3.896 8 C -0.142 4.142 9 C -0.012 4.012 10 C 0.049 3.951 11 C -0.508 4.508 12 H 0.058 0.942 13 C 0.057 3.943 14 N -0.895 5.895 15 Si 0.894 3.106 16 H -0.272 1.272 17 H -0.283 1.283 18 H -0.284 1.284 19 C -0.138 4.138 20 C -0.081 4.081 21 C -0.125 4.125 22 H 0.057 0.943 23 H 0.060 0.940 24 H 0.055 0.945 25 H 0.070 0.930 26 H 0.078 0.922 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.113 0.887 32 H 0.030 0.970 33 H 0.027 0.973 34 H 0.261 0.739 35 H 0.119 0.881 36 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.806 14.542 -2.101 18.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.182 4.182 3 C -0.050 4.050 4 C -0.143 4.143 5 N -0.174 5.174 6 C -0.061 4.061 7 C 0.000 4.000 8 C -0.163 4.163 9 C -0.014 4.014 10 C 0.013 3.987 11 C -0.546 4.546 12 H 0.076 0.924 13 C -0.144 4.144 14 N -0.535 5.535 15 Si 0.721 3.279 16 H -0.197 1.197 17 H -0.209 1.209 18 H -0.210 1.210 19 C -0.157 4.157 20 C -0.100 4.100 21 C -0.129 4.129 22 H 0.075 0.925 23 H 0.079 0.921 24 H 0.074 0.926 25 H 0.089 0.911 26 H 0.097 0.903 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.094 0.906 30 H 0.099 0.901 31 H 0.131 0.869 32 H 0.049 0.951 33 H 0.045 0.955 34 H 0.070 0.930 35 H 0.137 0.863 36 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -10.404 14.670 -2.136 18.111 hybrid contribution 0.591 -0.270 0.984 1.180 sum -9.812 14.400 -1.151 17.463 Atomic orbital electron populations 1.20034 0.90193 1.01539 1.00983 1.19927 0.94504 0.90676 1.13121 1.19864 0.82693 0.95486 1.06924 1.20371 1.01512 0.90070 1.02373 1.43541 1.04914 1.04282 1.64651 1.21817 0.88277 0.93588 1.02414 1.18274 0.95731 0.82017 1.04016 1.19879 0.95952 0.91778 1.08682 1.20347 0.96063 0.93404 0.91561 1.18349 0.90151 0.92562 0.97681 1.21119 1.15909 1.26002 0.91594 0.92412 1.25008 0.96260 0.95948 0.97139 1.69968 1.22360 1.30640 1.30485 0.86501 0.78280 0.78178 0.84901 1.19685 1.20918 1.21007 1.20643 0.92060 0.99388 1.03570 1.20123 0.98392 0.90843 1.00624 1.18889 0.91677 0.92946 1.09346 0.92453 0.92136 0.92566 0.91137 0.90277 0.91921 0.91864 0.90636 0.90071 0.86900 0.95149 0.95472 0.92953 0.86328 0.87121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.84 10.17 36.01 0.37 -0.48 16 2 C -0.17 -2.76 6.31 -102.71 -0.65 -3.41 16 3 C 0.06 0.81 6.83 -81.77 -0.56 0.25 16 4 C -0.09 -0.83 9.82 36.01 0.35 -0.48 16 5 N -0.49 -7.82 3.18 -117.20 -0.37 -8.19 16 6 C 0.08 0.96 10.81 59.84 0.65 1.61 16 7 C 0.10 2.02 6.81 -83.99 -0.57 1.45 16 8 C -0.14 -3.02 9.60 -39.43 -0.38 -3.40 16 9 C -0.01 -0.28 5.07 -104.58 -0.53 -0.81 16 10 C 0.05 1.30 5.08 -29.03 -0.15 1.16 16 11 C -0.51 -14.51 9.09 -34.44 -0.31 -14.82 16 12 H 0.06 1.66 7.74 -52.49 -0.41 1.25 16 13 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 14 N -0.90 -26.71 13.29 55.43 0.74 -25.98 16 15 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 16 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 17 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 18 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 19 C -0.14 -2.87 9.62 -39.95 -0.38 -3.26 16 20 C -0.08 -1.52 10.05 -39.65 -0.40 -1.92 16 21 C -0.12 -2.36 6.35 -105.14 -0.67 -3.03 16 22 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 23 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 24 H 0.06 0.55 7.05 -51.93 -0.37 0.19 16 25 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.08 0.66 7.04 -51.93 -0.37 0.29 16 27 H 0.06 0.53 6.92 -51.93 -0.36 0.17 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.07 0.69 6.88 -51.93 -0.36 0.33 16 30 H 0.08 0.98 8.10 -51.93 -0.42 0.56 16 31 H 0.11 2.32 8.06 -52.49 -0.42 1.89 16 32 H 0.03 0.83 8.08 -51.93 -0.42 0.41 16 33 H 0.03 0.75 8.08 -51.93 -0.42 0.33 16 34 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 35 H 0.12 2.36 8.06 -52.49 -0.42 1.94 16 36 H 0.11 1.76 8.06 -52.49 -0.42 1.33 16 LS Contribution 303.33 15.07 4.57 4.57 Total: -1.00 -32.19 303.33 -8.62 -40.82 By element: Atomic # 1 Polarization: 2.79 SS G_CDS: -5.21 Total: -2.42 kcal Atomic # 6 Polarization: -22.26 SS G_CDS: -3.33 Total: -25.59 kcal Atomic # 7 Polarization: -34.53 SS G_CDS: 0.36 Total: -34.17 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -32.19 -8.62 -40.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259897577.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.505 kcal (2) G-P(sol) polarization free energy of solvation -32.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds