Wall clock time and date at job start Mon Mar 30 2020 06:13:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.34238 * 126.50435 * 2 1 4 4 C 1.50700 * 125.03294 * 0.04741 * 3 2 1 5 5 N 1.36831 * 109.92986 * 180.02562 * 3 2 1 6 6 C 1.46495 * 125.06009 * 179.97438 * 5 3 2 7 7 C 1.37690 * 109.87308 * 359.97438 * 5 3 2 8 8 C 1.39129 * 133.50724 * 180.02562 * 7 5 3 9 9 C 1.37745 * 119.77529 * 180.21085 * 8 7 5 10 10 C 1.50698 * 119.66351 * 179.74542 * 9 8 7 11 11 C 1.50703 * 109.47189 * 89.99734 * 10 9 8 12 12 H 1.07991 * 120.00109 * 0.02562 * 11 10 9 13 13 C 1.37878 * 119.99658 * 179.97438 * 11 10 9 14 14 N 1.31515 * 120.00630 * 359.97438 * 13 11 10 15 15 Si 1.86810 * 119.99638 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.46951 * 0.02562 * 15 13 11 17 17 H 1.48502 * 109.47049 * 119.99855 * 15 13 11 18 18 H 1.48491 * 109.47209 * 240.00044 * 15 13 11 19 19 C 1.38833 * 120.66926 * 359.49037 * 9 8 7 20 20 C 1.36619 * 120.52540 * 0.51093 * 19 9 8 21 21 C 1.39630 * 119.76480 * 359.74998 * 20 19 9 22 22 H 1.09000 * 109.46891 * 89.97813 * 1 2 3 23 23 H 1.09001 * 109.47294 * 209.97832 * 1 2 3 24 24 H 1.08996 * 109.46577 * 329.98289 * 1 2 3 25 25 H 1.09000 * 109.47407 * 269.98142 * 4 3 2 26 26 H 1.09003 * 109.46965 * 29.98367 * 4 3 2 27 27 H 1.09000 * 109.46778 * 149.97880 * 4 3 2 28 28 H 1.09000 * 109.47352 * 269.99643 * 6 5 3 29 29 H 1.08993 * 109.47159 * 29.99895 * 6 5 3 30 30 H 1.09004 * 109.46670 * 149.99917 * 6 5 3 31 31 H 1.08002 * 120.10881 * 359.92801 * 8 7 5 32 32 H 1.09004 * 109.47349 * 209.99729 * 10 9 8 33 33 H 1.09004 * 109.47296 * 329.99757 * 10 9 8 34 34 H 0.96995 * 119.99936 * 179.97438 * 14 13 11 35 35 H 1.08001 * 119.73338 * 180.26414 * 19 9 8 36 36 H 1.08001 * 120.11528 * 179.72939 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3056 1.0790 0.0000 4 6 1.8284 2.5085 0.0010 5 7 3.6171 0.6887 -0.0006 6 6 4.7657 1.5979 -0.0013 7 6 3.6963 -0.6859 -0.0004 8 6 4.7588 -1.5841 -0.0003 9 6 4.5094 -2.9388 -0.0045 10 6 5.6622 -3.9094 -0.0102 11 6 6.0494 -4.2378 1.4087 12 1 5.5140 -3.7890 2.2322 13 6 7.0865 -5.1122 1.6554 14 7 7.7376 -5.6600 0.6526 15 14 7.5660 -5.5199 3.4143 16 1 6.6841 -4.7795 4.3520 17 1 7.4161 -6.9796 3.6425 18 1 8.9786 -5.1251 3.6464 19 6 3.2068 -3.4190 0.0018 20 6 2.1486 -2.5549 0.0018 21 6 2.3784 -1.1776 0.0007 22 1 -0.3633 0.0004 -1.0277 23 1 -0.3634 -0.8902 0.5135 24 1 -0.3632 0.8898 0.5141 25 1 1.7129 2.8537 -1.0264 26 1 0.8693 2.5709 0.5153 27 1 2.5577 3.1346 0.5150 28 1 5.0501 1.8233 -1.0291 29 1 4.4985 2.5213 0.5125 30 1 5.6032 1.1257 0.5123 31 1 5.7757 -1.2203 -0.0016 32 1 5.3658 -4.8225 -0.5266 33 1 6.5123 -3.4608 -0.5243 34 1 8.4674 -6.2748 0.8262 35 1 3.0286 -4.4842 0.0027 36 1 1.1380 -2.9357 0.0023 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259897577.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:58 Heat of formation + Delta-G solvation = 21.679504 kcal Electronic energy + Delta-G solvation = -16792.990262 eV Core-core repulsion = 14240.987877 eV Total energy + Delta-G solvation = -2552.002385 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.25740 -38.55721 -35.33021 -34.68820 -32.78249 -31.44873 -29.89777 -29.50166 -27.39443 -25.61819 -24.24339 -22.82100 -21.44233 -19.57460 -18.51019 -17.44876 -17.30226 -16.57299 -16.44922 -15.68957 -14.98562 -14.68624 -14.52060 -14.29159 -14.02668 -13.88058 -13.70235 -13.32941 -13.21525 -13.11984 -12.99587 -12.79151 -12.57867 -12.52496 -12.09901 -11.93696 -11.87522 -11.38170 -11.29328 -10.62211 -10.18439 -8.87703 -8.33228 -8.12694 -6.34510 0.32295 0.79480 1.37716 1.38365 1.52277 1.79099 1.97680 2.39197 3.08240 3.09113 3.80745 3.85091 3.97931 4.16457 4.36177 4.37336 4.44867 4.53510 4.58157 4.63997 4.68953 4.79465 4.92235 4.96945 5.03407 5.10168 5.17783 5.26804 5.31505 5.32670 5.44134 5.68179 5.76695 5.90262 6.04512 6.11233 6.17457 6.43077 6.56755 6.77586 7.33836 8.88511 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.032447 B = 0.005475 C = 0.005132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.744333 B = 5113.334462 C = 5454.983700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.198 4.198 3 C 0.067 3.933 4 C -0.084 4.084 5 N -0.491 5.491 6 C 0.072 3.928 7 C 0.083 3.917 8 C -0.148 4.148 9 C -0.046 4.046 10 C 0.061 3.939 11 C -0.527 4.527 12 H 0.050 0.950 13 C 0.005 3.995 14 N -0.930 5.930 15 Si 0.966 3.034 16 H -0.268 1.268 17 H -0.273 1.273 18 H -0.274 1.274 19 C -0.156 4.156 20 C -0.074 4.074 21 C -0.138 4.138 22 H 0.067 0.933 23 H 0.058 0.942 24 H 0.082 0.918 25 H 0.088 0.912 26 H 0.098 0.902 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.111 0.889 30 H 0.070 0.930 31 H 0.106 0.894 32 H 0.006 0.994 33 H 0.001 0.999 34 H 0.266 0.734 35 H 0.117 0.883 36 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.641 17.227 -1.052 21.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.204 4.204 3 C -0.039 4.039 4 C -0.141 4.141 5 N -0.176 5.176 6 C -0.069 4.069 7 C -0.023 4.023 8 C -0.169 4.169 9 C -0.047 4.047 10 C 0.024 3.976 11 C -0.565 4.565 12 H 0.069 0.931 13 C -0.193 4.193 14 N -0.570 5.570 15 Si 0.791 3.209 16 H -0.192 1.192 17 H -0.199 1.199 18 H -0.199 1.199 19 C -0.175 4.175 20 C -0.093 4.093 21 C -0.143 4.143 22 H 0.086 0.914 23 H 0.077 0.923 24 H 0.101 0.899 25 H 0.107 0.893 26 H 0.117 0.883 27 H 0.099 0.901 28 H 0.096 0.904 29 H 0.129 0.871 30 H 0.089 0.911 31 H 0.124 0.876 32 H 0.024 0.976 33 H 0.019 0.981 34 H 0.075 0.925 35 H 0.135 0.865 36 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -12.240 17.380 -1.095 21.286 hybrid contribution 1.115 -0.942 0.597 1.577 sum -11.126 16.438 -0.498 19.855 Atomic orbital electron populations 1.20101 0.87443 1.02784 1.02056 1.20397 0.96464 0.89447 1.14128 1.20748 0.81622 0.97792 1.03722 1.20568 1.02767 0.86658 1.04094 1.43915 1.06813 1.03295 1.63553 1.22117 0.86950 0.93979 1.03806 1.18286 0.95398 0.83959 1.04688 1.19770 0.96431 0.91686 1.08991 1.20051 0.95730 0.93570 0.95337 1.18063 0.90771 0.92338 0.96380 1.21372 1.16364 1.26437 0.92308 0.93138 1.25922 0.95969 0.95518 1.01846 1.70086 1.22867 1.31148 1.32905 0.85378 0.78170 0.78240 0.79148 1.19233 1.19880 1.19939 1.20633 0.91935 0.99796 1.05134 1.20369 0.98989 0.90888 0.99006 1.19433 0.92570 0.93944 1.08352 0.91382 0.92326 0.89945 0.89311 0.88293 0.90146 0.90426 0.87092 0.91077 0.87608 0.97569 0.98061 0.92494 0.86536 0.84151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.36 10.17 71.24 0.72 -0.63 16 2 C -0.20 -5.71 6.31 -18.62 -0.12 -5.82 16 3 C 0.07 1.73 6.83 40.87 0.28 2.00 16 4 C -0.08 -1.19 9.82 71.24 0.70 -0.49 16 5 N -0.49 -14.80 3.18 -524.71 -1.67 -16.47 16 6 C 0.07 1.55 10.81 127.77 1.38 2.93 16 7 C 0.08 3.22 6.81 39.03 0.27 3.49 16 8 C -0.15 -6.61 9.60 22.37 0.21 -6.40 16 9 C -0.05 -2.23 5.07 -19.84 -0.10 -2.33 16 10 C 0.06 3.49 5.08 29.10 0.15 3.64 16 11 C -0.53 -31.53 9.09 25.60 0.23 -31.30 16 12 H 0.05 3.02 7.74 -2.92 -0.02 3.00 16 13 C 0.01 0.32 5.46 84.65 0.46 0.78 16 14 N -0.93 -57.33 13.29 21.45 0.28 -57.05 16 15 Si 0.97 45.52 29.54 68.60 2.03 47.55 16 16 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 17 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 18 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 19 C -0.16 -6.82 9.62 22.03 0.21 -6.60 16 20 C -0.07 -2.79 10.05 22.23 0.22 -2.56 16 21 C -0.14 -5.15 6.35 -20.20 -0.13 -5.28 16 22 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 23 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 24 H 0.08 1.23 7.05 -2.39 -0.02 1.21 16 25 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.10 1.07 7.04 -2.39 -0.02 1.06 16 27 H 0.08 0.90 6.92 -2.39 -0.02 0.88 16 28 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.11 1.58 6.88 -2.39 -0.02 1.56 16 30 H 0.07 1.67 8.10 -2.38 -0.02 1.65 16 31 H 0.11 4.67 8.06 -2.91 -0.02 4.64 16 32 H 0.01 0.36 8.08 -2.39 -0.02 0.34 16 33 H 0.00 0.07 8.08 -2.38 -0.02 0.05 16 34 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 35 H 0.12 4.95 8.06 -2.91 -0.02 4.92 16 36 H 0.14 4.28 8.06 -2.91 -0.02 4.26 16 Total: -1.00 -72.83 303.33 6.19 -66.63 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: 1.06 Total: 7.91 kcal Atomic # 6 Polarization: -53.06 SS G_CDS: 4.50 Total: -48.57 kcal Atomic # 7 Polarization: -72.14 SS G_CDS: -1.38 Total: -73.52 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal Total: -72.83 6.19 -66.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259897577.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.314 kcal (2) G-P(sol) polarization free energy of solvation -72.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds