Wall clock time and date at job start Mon Mar 30 2020 06:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50692 * 109.47099 * 2 1 4 4 N 1.35645 * 125.36294 * 259.98255 * 3 2 1 5 5 H 0.97000 * 124.68706 * 0.02562 * 4 3 2 6 6 C 1.38141 * 110.61940 * 180.02562 * 4 3 2 7 7 C 1.39123 * 132.80058 * 180.02562 * 6 4 3 8 8 C 1.37871 * 119.97039 * 179.97438 * 7 6 4 9 9 C 1.50696 * 119.68671 * 179.97438 * 8 7 6 10 10 C 1.38668 * 120.62299 * 0.02562 * 8 7 6 11 11 C 1.37883 * 120.25471 * 359.97438 * 10 8 7 12 12 C 1.50696 * 120.15548 * 179.97438 * 11 10 8 13 13 C 1.39187 * 119.68952 * 0.02562 * 11 10 8 14 14 C 1.38902 * 125.35900 * 79.99953 * 3 2 1 15 15 C 1.40897 * 126.93013 * 359.72403 * 14 3 2 16 16 H 1.07997 * 119.99675 * 223.46522 * 15 14 3 17 17 C 1.39740 * 119.99801 * 43.46361 * 15 14 3 18 18 N 1.31051 * 120.00255 * 22.61731 * 17 15 14 19 19 Si 1.86797 * 119.99702 * 202.61950 * 17 15 14 20 20 H 1.48499 * 109.47439 * 60.00119 * 19 17 15 21 21 H 1.48506 * 109.47173 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.47291 * 300.00006 * 19 17 15 23 23 H 1.09000 * 109.47119 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47414 * 299.99575 * 1 2 3 25 25 H 1.08994 * 109.47353 * 60.00236 * 1 2 3 26 26 H 1.09000 * 109.47138 * 239.99951 * 2 1 3 27 27 H 1.08998 * 109.46990 * 120.00078 * 2 1 3 28 28 H 1.07995 * 120.01840 * 359.95248 * 7 6 4 29 29 H 1.09007 * 109.47171 * 270.02538 * 9 8 7 30 30 H 1.09004 * 109.47152 * 30.02164 * 9 8 7 31 31 H 1.09000 * 109.47453 * 150.02596 * 9 8 7 32 32 H 1.08000 * 119.87209 * 179.97438 * 10 8 7 33 33 H 1.08994 * 109.47316 * 264.66496 * 12 11 10 34 34 H 1.09004 * 109.46987 * 24.66326 * 12 11 10 35 35 H 1.08994 * 109.47180 * 144.66393 * 12 11 10 36 36 H 0.97000 * 119.99646 * 183.30992 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 7 2.4754 2.0968 -1.0893 5 1 2.5143 1.7320 -1.9873 6 6 2.8636 3.3765 -0.7430 7 6 3.3771 4.4400 -1.4783 8 6 3.6800 5.6292 -0.8498 9 6 4.2365 6.7769 -1.6523 10 6 3.4784 5.7787 0.5140 11 6 2.9704 4.7361 1.2596 12 6 2.7527 4.9008 2.7416 13 6 2.6605 3.5303 0.6371 14 6 2.1148 2.2442 1.1156 15 6 1.7471 1.9195 2.4364 16 1 1.1935 2.6296 3.0328 17 6 2.0988 0.6788 2.9747 18 7 3.1063 0.0082 2.4720 19 14 1.1327 -0.0239 4.4107 20 1 -0.2885 -0.1943 4.0152 21 1 1.7019 -1.3412 4.7929 22 1 1.2170 0.9052 5.5660 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.5388 4.3342 -2.5408 29 1 5.3248 6.7158 -1.6673 30 1 3.8557 6.7254 -2.6723 31 1 3.9318 7.7196 -1.1978 32 1 3.7203 6.7155 0.9940 33 1 3.6175 4.5145 3.2810 34 1 2.6217 5.9576 2.9743 35 1 1.8615 4.3495 3.0414 36 1 3.3204 -0.8740 2.8137 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259921622.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:21 Heat of formation + Delta-G solvation = 27.137119 kcal Electronic energy + Delta-G solvation = -17469.419771 eV Core-core repulsion = 14917.654046 eV Total energy + Delta-G solvation = -2551.765725 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.88047 -36.60156 -33.79519 -32.66151 -31.79196 -29.10965 -28.99505 -26.41233 -25.62489 -24.27448 -21.98626 -20.67817 -19.24561 -19.05579 -16.29911 -15.73975 -15.24095 -14.64353 -14.16485 -13.66226 -13.34503 -13.18431 -12.76833 -12.53385 -12.45198 -12.21598 -11.99289 -11.83144 -11.32644 -11.25350 -11.14948 -11.03593 -10.74424 -10.44860 -10.28790 -10.13323 -9.85968 -9.77602 -9.59676 -8.62816 -7.98766 -6.95612 -6.54380 -6.08229 -4.00053 2.19281 2.64892 3.15037 3.22516 3.27178 4.10733 4.21102 4.41120 4.78701 5.32551 5.57339 5.59739 5.88909 5.95911 6.01478 6.04351 6.10765 6.17111 6.25768 6.37897 6.42338 6.52488 6.60556 6.64301 6.70822 6.85629 6.91654 7.06957 7.13083 7.29953 7.37737 7.51986 7.56482 7.69071 7.82670 8.14234 8.42975 8.68048 8.96995 9.14866 9.24024 10.58357 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.026574 B = 0.008503 C = 0.006921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.424003 B = 3292.107418 C = 4044.896485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.040 4.040 3 C -0.043 4.043 4 N -0.589 5.589 5 H 0.391 0.609 6 C 0.096 3.904 7 C -0.159 4.159 8 C -0.084 4.084 9 C -0.100 4.100 10 C -0.187 4.187 11 C -0.019 4.019 12 C -0.107 4.107 13 C -0.123 4.123 14 C 0.058 3.942 15 C -0.451 4.451 16 H 0.073 0.927 17 C 0.079 3.921 18 N -0.818 5.818 19 Si 0.883 3.117 20 H -0.268 1.268 21 H -0.284 1.284 22 H -0.270 1.270 23 H 0.037 0.963 24 H 0.063 0.937 25 H 0.036 0.964 26 H 0.030 0.970 27 H 0.104 0.896 28 H 0.099 0.901 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.104 0.896 33 H 0.064 0.936 34 H 0.044 0.956 35 H 0.078 0.922 36 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.862 4.226 -4.252 6.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.078 4.078 3 C -0.147 4.147 4 N -0.191 5.191 5 H 0.225 0.775 6 C -0.014 4.014 7 C -0.180 4.180 8 C -0.085 4.085 9 C -0.157 4.157 10 C -0.207 4.207 11 C -0.019 4.019 12 C -0.163 4.163 13 C -0.129 4.129 14 C 0.053 3.947 15 C -0.485 4.485 16 H 0.091 0.909 17 C -0.132 4.132 18 N -0.448 5.448 19 Si 0.708 3.292 20 H -0.193 1.193 21 H -0.209 1.209 22 H -0.195 1.195 23 H 0.056 0.944 24 H 0.082 0.918 25 H 0.055 0.945 26 H 0.049 0.951 27 H 0.122 0.878 28 H 0.117 0.883 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.122 0.878 33 H 0.082 0.918 34 H 0.063 0.937 35 H 0.096 0.904 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.741 3.916 -4.234 5.814 hybrid contribution -0.215 -0.678 0.070 0.714 sum -0.956 3.238 -4.164 5.361 Atomic orbital electron populations 1.21691 0.96950 0.99415 1.01596 1.20011 0.93896 0.91550 1.02372 1.20479 1.13205 0.95881 0.85148 1.41154 1.58546 1.10304 1.09093 0.77529 1.18088 1.02319 0.86115 0.94846 1.19570 1.08146 0.92578 0.97725 1.19150 1.01232 0.94196 0.93925 1.20626 1.00075 0.96238 0.98776 1.20316 1.08604 0.98554 0.93214 1.19223 0.95791 0.91751 0.95152 1.20752 1.03206 0.99845 0.92527 1.19570 1.04928 0.96175 0.92239 1.17601 0.97207 0.87820 0.92091 1.18375 1.32931 1.00420 0.96725 0.90916 1.25444 0.93544 0.97146 0.97053 1.69959 1.21723 1.12305 1.40835 0.86787 0.81333 0.78525 0.82527 1.19315 1.20907 1.19492 0.94389 0.91755 0.94486 0.95110 0.87849 0.88313 0.92315 0.92674 0.92394 0.87800 0.91760 0.93660 0.90352 0.91895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.70 9.89 37.16 0.37 -2.33 16 2 C -0.04 -0.88 5.97 -27.89 -0.17 -1.04 16 3 C -0.04 -1.03 6.18 -80.66 -0.50 -1.52 16 4 N -0.59 -12.87 5.99 -6.14 -0.04 -12.91 16 5 H 0.39 7.17 8.96 -40.82 -0.37 6.80 16 6 C 0.10 2.20 7.23 -83.90 -0.61 1.59 16 7 C -0.16 -3.15 9.70 -39.39 -0.38 -3.53 16 8 C -0.08 -1.56 5.88 -104.60 -0.61 -2.18 16 9 C -0.10 -1.41 9.99 36.00 0.36 -1.05 16 10 C -0.19 -3.67 9.32 -39.55 -0.37 -4.04 16 11 C -0.02 -0.41 5.90 -104.40 -0.62 -1.03 16 12 C -0.11 -2.13 9.57 36.00 0.34 -1.79 16 13 C -0.12 -3.03 6.15 -104.90 -0.65 -3.68 16 14 C 0.06 1.52 5.55 -104.79 -0.58 0.94 16 15 C -0.45 -11.79 8.12 -38.01 -0.31 -12.09 16 16 H 0.07 1.86 6.31 -52.49 -0.33 1.53 16 17 C 0.08 1.99 4.29 -17.32 -0.07 1.92 16 18 N -0.82 -21.39 10.97 55.54 0.61 -20.78 16 19 Si 0.88 19.13 29.62 -169.99 -5.03 14.09 16 20 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 21 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 22 H -0.27 -5.83 7.11 56.52 0.40 -5.42 16 23 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 25 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.10 2.48 4.81 -51.93 -0.25 2.23 16 28 H 0.10 1.70 8.06 -52.49 -0.42 1.28 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.05 0.70 8.08 -51.93 -0.42 0.28 16 31 H 0.06 0.73 8.08 -51.93 -0.42 0.31 16 32 H 0.10 1.78 8.06 -52.49 -0.42 1.35 16 33 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 34 H 0.04 0.75 8.05 -51.93 -0.42 0.34 16 35 H 0.08 1.65 5.76 -51.93 -0.30 1.35 16 36 H 0.27 6.62 8.30 -40.82 -0.34 6.28 16 LS Contribution 294.96 15.07 4.45 4.45 Total: -1.00 -28.09 294.96 -8.83 -36.92 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -5.02 Total: 8.08 kcal Atomic # 6 Polarization: -26.05 SS G_CDS: -3.79 Total: -29.85 kcal Atomic # 7 Polarization: -34.26 SS G_CDS: 0.57 Total: -33.69 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -5.03 Total: 14.09 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -28.09 -8.83 -36.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259921622.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.053 kcal (2) G-P(sol) polarization free energy of solvation -28.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.916 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds