Wall clock time and date at job start Mon Mar 30 2020 06:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50692 * 109.47099 * 2 1 4 4 N 1.35645 * 125.36294 * 259.98255 * 3 2 1 5 5 H 0.97000 * 124.68706 * 0.02562 * 4 3 2 6 6 C 1.38141 * 110.61940 * 180.02562 * 4 3 2 7 7 C 1.39123 * 132.80058 * 180.02562 * 6 4 3 8 8 C 1.37871 * 119.97039 * 179.97438 * 7 6 4 9 9 C 1.50696 * 119.68671 * 179.97438 * 8 7 6 10 10 C 1.38668 * 120.62299 * 0.02562 * 8 7 6 11 11 C 1.37883 * 120.25471 * 359.97438 * 10 8 7 12 12 C 1.50696 * 120.15548 * 179.97438 * 11 10 8 13 13 C 1.39187 * 119.68952 * 0.02562 * 11 10 8 14 14 C 1.38902 * 125.35900 * 79.99953 * 3 2 1 15 15 C 1.40897 * 126.93013 * 359.72403 * 14 3 2 16 16 H 1.07997 * 119.99675 * 223.46522 * 15 14 3 17 17 C 1.39740 * 119.99801 * 43.46361 * 15 14 3 18 18 N 1.31051 * 120.00255 * 22.61731 * 17 15 14 19 19 Si 1.86797 * 119.99702 * 202.61950 * 17 15 14 20 20 H 1.48499 * 109.47439 * 60.00119 * 19 17 15 21 21 H 1.48506 * 109.47173 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.47291 * 300.00006 * 19 17 15 23 23 H 1.09000 * 109.47119 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47414 * 299.99575 * 1 2 3 25 25 H 1.08994 * 109.47353 * 60.00236 * 1 2 3 26 26 H 1.09000 * 109.47138 * 239.99951 * 2 1 3 27 27 H 1.08998 * 109.46990 * 120.00078 * 2 1 3 28 28 H 1.07995 * 120.01840 * 359.95248 * 7 6 4 29 29 H 1.09007 * 109.47171 * 270.02538 * 9 8 7 30 30 H 1.09004 * 109.47152 * 30.02164 * 9 8 7 31 31 H 1.09000 * 109.47453 * 150.02596 * 9 8 7 32 32 H 1.08000 * 119.87209 * 179.97438 * 10 8 7 33 33 H 1.08994 * 109.47316 * 264.66496 * 12 11 10 34 34 H 1.09004 * 109.46987 * 24.66326 * 12 11 10 35 35 H 1.08994 * 109.47180 * 144.66393 * 12 11 10 36 36 H 0.97000 * 119.99646 * 183.30992 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 7 2.4754 2.0968 -1.0893 5 1 2.5143 1.7320 -1.9873 6 6 2.8636 3.3765 -0.7430 7 6 3.3771 4.4400 -1.4783 8 6 3.6800 5.6292 -0.8498 9 6 4.2365 6.7769 -1.6523 10 6 3.4784 5.7787 0.5140 11 6 2.9704 4.7361 1.2596 12 6 2.7527 4.9008 2.7416 13 6 2.6605 3.5303 0.6371 14 6 2.1148 2.2442 1.1156 15 6 1.7471 1.9195 2.4364 16 1 1.1935 2.6296 3.0328 17 6 2.0988 0.6788 2.9747 18 7 3.1063 0.0082 2.4720 19 14 1.1327 -0.0239 4.4107 20 1 -0.2885 -0.1943 4.0152 21 1 1.7019 -1.3412 4.7929 22 1 1.2170 0.9052 5.5660 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.5388 4.3342 -2.5408 29 1 5.3248 6.7158 -1.6673 30 1 3.8557 6.7254 -2.6723 31 1 3.9318 7.7196 -1.1978 32 1 3.7203 6.7155 0.9940 33 1 3.6175 4.5145 3.2810 34 1 2.6217 5.9576 2.9743 35 1 1.8615 4.3495 3.0414 36 1 3.3204 -0.8740 2.8137 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259921622.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:21 Heat of formation + Delta-G solvation = 13.193139 kcal Electronic energy + Delta-G solvation = -17470.024427 eV Core-core repulsion = 14917.654046 eV Total energy + Delta-G solvation = -2552.370382 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.56158 -38.19909 -35.60576 -34.19414 -33.50936 -30.87121 -30.51627 -27.99884 -27.24975 -25.94215 -23.64081 -22.31891 -21.00810 -20.69077 -18.07049 -17.49765 -16.89286 -16.40574 -15.72692 -15.27227 -14.98873 -14.74251 -14.23928 -14.16081 -13.95778 -13.83748 -13.57742 -13.15265 -13.05227 -12.90459 -12.73510 -12.59542 -12.38823 -12.07025 -11.94989 -11.85111 -11.48410 -11.41777 -11.28032 -10.47016 -9.68964 -8.62094 -8.41390 -7.86406 -5.91808 0.56168 1.03319 1.41153 1.45766 1.53390 2.29737 2.41012 2.77147 3.07713 3.48321 4.13180 4.22225 4.36484 4.42463 4.54999 4.64380 4.70169 4.78206 4.84233 4.92844 4.95428 4.99684 5.03204 5.11579 5.19506 5.23252 5.31508 5.38238 5.52560 5.60895 5.65539 5.75495 5.95981 6.03247 6.17292 6.37316 6.65981 6.86129 7.24331 7.26959 7.41226 8.72057 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.026574 B = 0.008503 C = 0.006921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.424003 B = 3292.107418 C = 4044.896485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.043 4.043 3 C -0.045 4.045 4 N -0.587 5.587 5 H 0.407 0.593 6 C 0.079 3.921 7 C -0.164 4.164 8 C -0.080 4.080 9 C -0.097 4.097 10 C -0.183 4.183 11 C -0.048 4.048 12 C -0.099 4.099 13 C -0.167 4.167 14 C 0.013 3.987 15 C -0.472 4.472 16 H 0.061 0.939 17 C 0.047 3.953 18 N -0.850 5.850 19 Si 0.941 3.059 20 H -0.264 1.264 21 H -0.277 1.277 22 H -0.269 1.269 23 H 0.064 0.936 24 H 0.040 0.960 25 H 0.048 0.952 26 H 0.048 0.952 27 H 0.083 0.917 28 H 0.127 0.873 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.134 0.866 33 H 0.054 0.946 34 H 0.078 0.922 35 H 0.057 0.943 36 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.705 5.499 -5.510 7.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.081 4.081 3 C -0.150 4.150 4 N -0.190 5.190 5 H 0.243 0.757 6 C -0.031 4.031 7 C -0.185 4.185 8 C -0.082 4.082 9 C -0.153 4.153 10 C -0.203 4.203 11 C -0.048 4.048 12 C -0.156 4.156 13 C -0.173 4.173 14 C 0.007 3.993 15 C -0.505 4.505 16 H 0.079 0.921 17 C -0.161 4.161 18 N -0.482 5.482 19 Si 0.764 3.236 20 H -0.189 1.189 21 H -0.202 1.202 22 H -0.194 1.194 23 H 0.083 0.917 24 H 0.060 0.940 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.101 0.899 28 H 0.145 0.855 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.151 0.849 33 H 0.073 0.927 34 H 0.097 0.903 35 H 0.075 0.925 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.583 5.203 -5.513 7.603 hybrid contribution -0.203 -0.923 0.351 1.008 sum -0.787 4.280 -5.162 6.751 Atomic orbital electron populations 1.21588 0.95141 1.00981 1.00985 1.20034 0.95451 0.90387 1.02206 1.20785 1.12266 0.96468 0.85501 1.41087 1.58368 1.10152 1.09407 0.75732 1.18501 1.02849 0.87011 0.94734 1.19979 1.07400 0.92062 0.99109 1.19760 0.99257 0.95137 0.94000 1.20695 1.00797 0.94819 0.99035 1.20733 1.06896 0.98780 0.93866 1.19596 0.96910 0.92017 0.96293 1.20671 1.01734 1.01518 0.91643 1.19949 1.06656 0.96916 0.93748 1.17974 0.99024 0.89498 0.92774 1.18470 1.33686 1.01108 0.97284 0.92059 1.25995 0.93920 0.97070 0.99148 1.70018 1.22928 1.12700 1.42565 0.85888 0.80116 0.77892 0.79658 1.18869 1.20226 1.19436 0.91690 0.94049 0.93335 0.93296 0.89872 0.85472 0.90783 0.90931 0.90570 0.84854 0.92724 0.90347 0.92456 0.91705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.96 9.89 71.98 0.71 -4.25 16 2 C -0.04 -1.87 5.97 29.85 0.18 -1.69 16 3 C -0.04 -2.20 6.18 42.13 0.26 -1.94 16 4 N -0.59 -25.64 5.99 -173.35 -1.04 -26.68 16 5 H 0.41 14.60 8.96 -92.71 -0.83 13.77 16 6 C 0.08 3.57 7.23 38.87 0.28 3.85 16 7 C -0.16 -6.18 9.70 22.40 0.22 -5.96 16 8 C -0.08 -2.75 5.88 -19.85 -0.12 -2.87 16 9 C -0.10 -2.28 9.99 71.23 0.71 -1.57 16 10 C -0.18 -6.81 9.32 22.29 0.21 -6.60 16 11 C -0.05 -2.13 5.90 -19.72 -0.12 -2.24 16 12 C -0.10 -4.02 9.57 71.23 0.68 -3.34 16 13 C -0.17 -8.43 6.15 -20.04 -0.12 -8.55 16 14 C 0.01 0.70 5.55 -19.97 -0.11 0.59 16 15 C -0.47 -25.79 8.12 23.28 0.19 -25.60 16 16 H 0.06 3.34 6.31 -2.91 -0.02 3.33 16 17 C 0.05 2.42 4.29 85.17 0.36 2.79 16 18 N -0.85 -45.91 10.97 21.80 0.24 -45.67 16 19 Si 0.94 40.28 29.62 68.60 2.03 42.31 16 20 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 21 H -0.28 -11.46 7.11 99.48 0.71 -10.75 16 22 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 23 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 24 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 25 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 26 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 27 H 0.08 4.07 4.81 -2.39 -0.01 4.06 16 28 H 0.13 3.97 8.06 -2.91 -0.02 3.94 16 29 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 30 H 0.07 1.49 8.08 -2.39 -0.02 1.47 16 31 H 0.08 1.55 8.08 -2.39 -0.02 1.53 16 32 H 0.13 4.08 8.06 -2.91 -0.02 4.06 16 33 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 34 H 0.08 2.54 8.05 -2.38 -0.02 2.53 16 35 H 0.06 2.53 5.76 -2.39 -0.01 2.52 16 36 H 0.27 13.73 8.30 -92.71 -0.77 12.96 16 Total: -1.00 -62.63 294.96 4.82 -57.80 By element: Atomic # 1 Polarization: 29.37 SS G_CDS: 0.26 Total: 29.62 kcal Atomic # 6 Polarization: -60.72 SS G_CDS: 3.34 Total: -57.38 kcal Atomic # 7 Polarization: -71.55 SS G_CDS: -0.80 Total: -72.35 kcal Atomic # 14 Polarization: 40.28 SS G_CDS: 2.03 Total: 42.31 kcal Total: -62.63 4.82 -57.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259921622.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.995 kcal (2) G-P(sol) polarization free energy of solvation -62.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.802 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds