Wall clock time and date at job start Mon Mar 30 2020 05:26:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86804 * 119.99703 * 2 1 4 4 H 1.48504 * 109.46995 * 274.66219 * 3 2 1 5 5 H 1.48497 * 109.47320 * 34.66559 * 3 2 1 6 6 H 1.48498 * 109.46905 * 154.66534 * 3 2 1 7 7 C 1.39928 * 120.00259 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00425 * 162.15586 * 7 2 1 9 9 C 1.41408 * 119.99767 * 342.15031 * 7 2 1 10 10 C 1.40782 * 120.13238 * 335.17247 * 9 7 2 11 11 C 1.37647 * 119.63960 * 180.23214 * 10 9 7 12 12 C 1.38392 * 120.40637 * 359.92863 * 11 10 9 13 13 C 1.39429 * 120.87127 * 359.71353 * 12 11 10 14 14 C 1.38796 * 119.35206 * 0.46002 * 13 12 11 15 15 N 1.40095 * 110.88624 * 180.48019 * 13 12 11 16 16 C 1.46897 * 111.00021 * 103.30867 * 15 13 12 17 17 C 1.53780 * 113.61663 * 80.85650 * 16 15 13 18 18 C 1.54051 * 86.98302 * 140.02147 * 17 16 15 19 19 C 1.53774 * 113.61635 * 178.46672 * 16 15 13 20 20 C 1.47878 * 107.88482 * 341.48701 * 15 13 12 21 21 C 1.51665 * 131.28906 * 179.28432 * 12 11 10 22 22 H 0.96998 * 119.99992 * 359.97438 * 1 2 3 23 23 H 1.08002 * 120.18314 * 0.20509 * 10 9 7 24 24 H 1.07997 * 119.80009 * 179.91679 * 11 10 9 25 25 H 1.08000 * 120.00161 * 179.74826 * 14 13 12 26 26 H 1.09004 * 112.84729 * 309.66678 * 16 15 13 27 27 H 1.08995 * 113.61824 * 254.61680 * 17 16 15 28 28 H 1.09002 * 113.61489 * 25.52267 * 17 16 15 29 29 H 1.09003 * 113.61660 * 220.02328 * 18 17 16 30 30 H 1.08999 * 113.68902 * 89.12847 * 18 17 16 31 31 H 1.08998 * 113.61576 * 334.48229 * 19 16 15 32 32 H 1.09003 * 113.61417 * 105.29560 * 19 16 15 33 33 H 1.09000 * 110.76309 * 145.76239 * 20 15 13 34 34 H 1.09002 * 110.76847 * 269.15517 * 20 15 13 35 35 H 1.08997 * 110.73017 * 314.72201 * 21 12 11 36 36 H 1.08993 * 110.73809 * 77.85508 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3911 2.1034 -1.3955 5 1 1.4925 2.6222 0.7963 6 1 3.5856 1.4138 0.5991 7 6 2.0080 -1.2118 -0.0005 8 1 3.0490 -1.2342 -0.2871 9 6 1.3520 -2.4071 0.3743 10 6 0.2259 -2.3606 1.2179 11 6 -0.4020 -3.5307 1.5803 12 6 0.0663 -4.7487 1.1194 13 6 1.1754 -4.8165 0.2771 14 6 1.8208 -3.6449 -0.0936 15 7 1.4597 -6.1440 -0.0685 16 6 1.0104 -6.4399 -1.4354 17 6 1.9868 -5.9602 -2.5223 18 6 1.6812 -7.2760 -3.2629 19 6 1.3271 -7.8740 -1.8912 20 6 0.7871 -7.0227 0.9124 21 6 -0.4155 -6.1651 1.3680 22 1 -0.4850 0.8400 0.0004 23 1 -0.1431 -1.4121 1.5792 24 1 -1.2652 -3.4982 2.2284 25 1 2.6833 -3.6855 -0.7422 26 1 -0.0229 -6.1428 -1.6149 27 1 1.6474 -5.0702 -3.0523 28 1 3.0183 -5.8819 -2.1789 29 1 2.5575 -7.7310 -3.7245 30 1 0.8316 -7.2089 -3.9425 31 1 2.1785 -8.3180 -1.3755 32 1 0.4556 -8.5285 -1.9104 33 1 0.4476 -7.9432 0.4375 34 1 1.4468 -7.2405 1.7523 35 1 -0.6223 -6.3221 2.4266 36 1 -1.2983 -6.3835 0.7672 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259940635.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:26:26 Heat of formation + Delta-G solvation = 46.634443 kcal Electronic energy + Delta-G solvation = -17305.062506 eV Core-core repulsion = 14754.142248 eV Total energy + Delta-G solvation = -2550.920258 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.93283 -37.50543 -35.43895 -32.97514 -30.74235 -28.57628 -27.92979 -25.40501 -24.78914 -24.03824 -21.54869 -20.13881 -19.87554 -18.93480 -17.18248 -15.73502 -15.38286 -15.23395 -14.63038 -14.05668 -13.90847 -13.44592 -12.63761 -12.57844 -12.23371 -12.13682 -11.79534 -11.71946 -11.41029 -11.12634 -11.11701 -10.96618 -10.61746 -10.46078 -10.36564 -10.08942 -9.97868 -9.82604 -9.35314 -9.13649 -8.27176 -7.39022 -6.79998 -6.73023 -4.33530 2.75286 2.97477 3.08068 3.12164 3.20087 3.93991 4.46488 4.60135 4.88056 4.92575 5.17481 5.19661 5.46847 5.57802 5.73934 5.75798 5.84843 5.93346 6.01563 6.08362 6.11533 6.34735 6.37717 6.39872 6.49624 6.52322 6.69037 6.98480 7.05845 7.09332 7.23276 7.29877 7.58071 7.81462 7.96377 8.10220 8.17492 8.36950 8.67129 8.91288 8.99231 10.19900 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.029070 B = 0.006723 C = 0.005783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.966718 B = 4163.964738 C = 4840.403186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.077 3.923 3 Si 0.906 3.094 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.260 1.260 7 C -0.461 4.461 8 H 0.078 0.922 9 C 0.120 3.880 10 C -0.170 4.170 11 C -0.076 4.076 12 C -0.261 4.261 13 C 0.103 3.897 14 C -0.201 4.201 15 N -0.482 5.482 16 C 0.063 3.937 17 C -0.123 4.123 18 C -0.142 4.142 19 C -0.131 4.131 20 C 0.052 3.948 21 C -0.088 4.088 22 H 0.280 0.720 23 H 0.120 0.880 24 H 0.085 0.915 25 H 0.093 0.907 26 H 0.063 0.937 27 H 0.066 0.934 28 H 0.087 0.913 29 H 0.066 0.934 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.060 0.940 33 H 0.069 0.931 34 H 0.076 0.924 35 H 0.060 0.940 36 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.425 -8.953 -2.043 9.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.184 1.184 7 C -0.491 4.491 8 H 0.096 0.904 9 C 0.117 3.883 10 C -0.190 4.190 11 C -0.095 4.095 12 C -0.265 4.265 13 C 0.009 3.991 14 C -0.222 4.222 15 N -0.201 5.201 16 C -0.044 4.044 17 C -0.161 4.161 18 C -0.180 4.180 19 C -0.169 4.169 20 C -0.075 4.075 21 C -0.127 4.127 22 H 0.091 0.909 23 H 0.138 0.862 24 H 0.103 0.897 25 H 0.111 0.889 26 H 0.081 0.919 27 H 0.085 0.915 28 H 0.106 0.894 29 H 0.085 0.915 30 H 0.094 0.906 31 H 0.105 0.895 32 H 0.078 0.922 33 H 0.087 0.913 34 H 0.095 0.905 35 H 0.079 0.921 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.778 -8.921 -2.078 9.193 hybrid contribution -0.648 0.973 0.015 1.169 sum 0.130 -7.948 -2.063 8.212 Atomic orbital electron populations 1.69835 1.07592 1.29133 1.35419 1.25886 0.94688 1.01258 0.92228 0.86334 0.80820 0.80760 0.79026 1.19607 1.20064 1.18389 1.19533 0.98107 0.91083 1.40348 0.90404 1.17381 0.91013 0.91444 0.88425 1.21244 0.99833 0.96381 1.01533 1.19960 0.98395 0.91687 0.99430 1.20232 1.01557 0.93241 1.11420 1.19075 0.94363 0.88060 0.97644 1.20343 1.03829 0.90265 1.07806 1.60582 1.55432 1.02590 1.01453 1.23142 0.97275 0.95779 0.88225 1.22951 1.00407 0.96769 0.95943 1.22765 1.01223 0.97921 0.96117 1.23015 1.01355 0.95875 0.96664 1.22956 0.94142 0.95185 0.95229 1.21302 0.97383 0.93786 1.00196 0.90940 0.86223 0.89714 0.88879 0.91936 0.91526 0.89414 0.91489 0.90583 0.89532 0.92171 0.91287 0.90521 0.92131 0.92915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.62 10.97 55.55 0.61 -20.01 16 2 C 0.08 1.94 5.13 -17.35 -0.09 1.85 16 3 Si 0.91 18.71 29.60 -169.99 -5.03 13.68 16 4 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 5 H -0.28 -5.56 7.11 56.52 0.40 -5.15 16 6 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 7 C -0.46 -12.32 9.04 -37.74 -0.34 -12.66 16 8 H 0.08 2.01 7.91 -52.49 -0.41 1.59 16 9 C 0.12 3.25 5.56 -106.92 -0.59 2.66 16 10 C -0.17 -4.49 8.70 -38.84 -0.34 -4.83 16 11 C -0.08 -1.83 10.01 -39.74 -0.40 -2.23 16 12 C -0.26 -5.99 6.25 -103.65 -0.65 -6.63 16 13 C 0.10 2.38 5.47 -83.43 -0.46 1.93 16 14 C -0.20 -5.08 9.66 -38.57 -0.37 -5.46 16 15 N -0.48 -9.37 5.01 -160.65 -0.81 -10.18 16 16 C 0.06 1.07 2.99 -66.91 -0.20 0.87 16 17 C -0.12 -1.97 7.64 -25.78 -0.20 -2.17 16 18 C -0.14 -1.81 8.09 -25.78 -0.21 -2.01 16 19 C -0.13 -1.75 6.56 -25.93 -0.17 -1.92 16 20 C 0.05 0.88 6.80 -2.46 -0.02 0.86 16 21 C -0.09 -1.63 6.97 -26.58 -0.19 -1.81 16 22 H 0.28 6.59 8.30 -40.82 -0.34 6.26 16 23 H 0.12 3.24 6.17 -52.49 -0.32 2.91 16 24 H 0.08 1.85 8.06 -52.49 -0.42 1.43 16 25 H 0.09 2.28 8.06 -52.49 -0.42 1.86 16 26 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 27 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 28 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.07 0.98 6.87 -51.93 -0.36 0.63 16 34 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 292.55 15.07 4.41 4.41 Total: -1.00 -27.62 292.55 -10.34 -37.95 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -5.30 Total: 5.70 kcal Atomic # 6 Polarization: -27.34 SS G_CDS: -4.21 Total: -31.56 kcal Atomic # 7 Polarization: -29.99 SS G_CDS: -0.20 Total: -30.18 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -5.03 Total: 13.68 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -27.62 -10.34 -37.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259940635.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.587 kcal (2) G-P(sol) polarization free energy of solvation -27.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds