Wall clock time and date at job start Mon Mar 30 2020 05:26:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86804 * 119.99703 * 2 1 4 4 H 1.48504 * 109.46995 * 274.66219 * 3 2 1 5 5 H 1.48497 * 109.47320 * 34.66559 * 3 2 1 6 6 H 1.48498 * 109.46905 * 154.66534 * 3 2 1 7 7 C 1.39928 * 120.00259 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00425 * 162.15586 * 7 2 1 9 9 C 1.41408 * 119.99767 * 342.15031 * 7 2 1 10 10 C 1.40782 * 120.13238 * 335.17247 * 9 7 2 11 11 C 1.37647 * 119.63960 * 180.23214 * 10 9 7 12 12 C 1.38392 * 120.40637 * 359.92863 * 11 10 9 13 13 C 1.39429 * 120.87127 * 359.71353 * 12 11 10 14 14 C 1.38796 * 119.35206 * 0.46002 * 13 12 11 15 15 N 1.40095 * 110.88624 * 180.48019 * 13 12 11 16 16 C 1.46897 * 111.00021 * 103.30867 * 15 13 12 17 17 C 1.53780 * 113.61663 * 80.85650 * 16 15 13 18 18 C 1.54051 * 86.98302 * 140.02147 * 17 16 15 19 19 C 1.53774 * 113.61635 * 178.46672 * 16 15 13 20 20 C 1.47878 * 107.88482 * 341.48701 * 15 13 12 21 21 C 1.51665 * 131.28906 * 179.28432 * 12 11 10 22 22 H 0.96998 * 119.99992 * 359.97438 * 1 2 3 23 23 H 1.08002 * 120.18314 * 0.20509 * 10 9 7 24 24 H 1.07997 * 119.80009 * 179.91679 * 11 10 9 25 25 H 1.08000 * 120.00161 * 179.74826 * 14 13 12 26 26 H 1.09004 * 112.84729 * 309.66678 * 16 15 13 27 27 H 1.08995 * 113.61824 * 254.61680 * 17 16 15 28 28 H 1.09002 * 113.61489 * 25.52267 * 17 16 15 29 29 H 1.09003 * 113.61660 * 220.02328 * 18 17 16 30 30 H 1.08999 * 113.68902 * 89.12847 * 18 17 16 31 31 H 1.08998 * 113.61576 * 334.48229 * 19 16 15 32 32 H 1.09003 * 113.61417 * 105.29560 * 19 16 15 33 33 H 1.09000 * 110.76309 * 145.76239 * 20 15 13 34 34 H 1.09002 * 110.76847 * 269.15517 * 20 15 13 35 35 H 1.08997 * 110.73017 * 314.72201 * 21 12 11 36 36 H 1.08993 * 110.73809 * 77.85508 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3911 2.1034 -1.3955 5 1 1.4925 2.6222 0.7963 6 1 3.5856 1.4138 0.5991 7 6 2.0080 -1.2118 -0.0005 8 1 3.0490 -1.2342 -0.2871 9 6 1.3520 -2.4071 0.3743 10 6 0.2259 -2.3606 1.2179 11 6 -0.4020 -3.5307 1.5803 12 6 0.0663 -4.7487 1.1194 13 6 1.1754 -4.8165 0.2771 14 6 1.8208 -3.6449 -0.0936 15 7 1.4597 -6.1440 -0.0685 16 6 1.0104 -6.4399 -1.4354 17 6 1.9868 -5.9602 -2.5223 18 6 1.6812 -7.2760 -3.2629 19 6 1.3271 -7.8740 -1.8912 20 6 0.7871 -7.0227 0.9124 21 6 -0.4155 -6.1651 1.3680 22 1 -0.4850 0.8400 0.0004 23 1 -0.1431 -1.4121 1.5792 24 1 -1.2652 -3.4982 2.2284 25 1 2.6833 -3.6855 -0.7422 26 1 -0.0229 -6.1428 -1.6149 27 1 1.6474 -5.0702 -3.0523 28 1 3.0183 -5.8819 -2.1789 29 1 2.5575 -7.7310 -3.7245 30 1 0.8316 -7.2089 -3.9425 31 1 2.1785 -8.3180 -1.3755 32 1 0.4556 -8.5285 -1.9104 33 1 0.4476 -7.9432 0.4375 34 1 1.4468 -7.2405 1.7523 35 1 -0.6223 -6.3221 2.4266 36 1 -1.2983 -6.3835 0.7672 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259940635.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:26:25 Heat of formation + Delta-G solvation = 32.539008 kcal Electronic energy + Delta-G solvation = -17305.673730 eV Core-core repulsion = 14754.142248 eV Total energy + Delta-G solvation = -2551.531482 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.47132 -38.99564 -37.13904 -34.83261 -32.47937 -30.33646 -29.65690 -26.92134 -26.30368 -25.37112 -23.22759 -21.87186 -21.62541 -20.22584 -19.00694 -17.29060 -17.07492 -16.65125 -16.28904 -15.67885 -15.56386 -14.96484 -14.27922 -14.20956 -13.87786 -13.55592 -13.35708 -13.20562 -12.90916 -12.75354 -12.62313 -12.47009 -12.34679 -12.04177 -11.78757 -11.65557 -11.44057 -11.26932 -11.06929 -10.97900 -9.94335 -9.33616 -8.66703 -8.55031 -6.35279 0.92025 1.03949 1.36963 1.47177 1.53488 2.19980 2.66662 3.00619 3.61773 3.69755 3.79099 3.94619 3.99602 4.10739 4.23018 4.33008 4.50478 4.62042 4.78412 4.84560 4.85772 4.92303 5.00224 5.06461 5.07706 5.10087 5.12981 5.22402 5.30175 5.41748 5.45764 5.58237 5.86697 5.94725 6.03990 6.17142 6.40603 6.47554 6.72688 6.93031 7.04333 8.32310 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.029070 B = 0.006723 C = 0.005783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.966718 B = 4163.964738 C = 4840.403186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.037 3.963 3 Si 0.982 3.018 4 H -0.262 1.262 5 H -0.264 1.264 6 H -0.259 1.259 7 C -0.500 4.500 8 H 0.073 0.927 9 C 0.092 3.908 10 C -0.197 4.197 11 C -0.082 4.082 12 C -0.270 4.270 13 C 0.105 3.895 14 C -0.223 4.223 15 N -0.489 5.489 16 C 0.048 3.952 17 C -0.135 4.135 18 C -0.125 4.125 19 C -0.112 4.112 20 C 0.054 3.946 21 C -0.084 4.084 22 H 0.288 0.712 23 H 0.104 0.896 24 H 0.105 0.895 25 H 0.086 0.914 26 H 0.045 0.955 27 H 0.044 0.956 28 H 0.077 0.923 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.094 0.906 32 H 0.084 0.916 33 H 0.104 0.896 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.280 -10.995 -2.255 11.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.178 4.178 3 Si 0.803 3.197 4 H -0.186 1.186 5 H -0.188 1.188 6 H -0.183 1.183 7 C -0.529 4.529 8 H 0.091 0.909 9 C 0.089 3.911 10 C -0.217 4.217 11 C -0.101 4.101 12 C -0.273 4.273 13 C 0.010 3.990 14 C -0.245 4.245 15 N -0.208 5.208 16 C -0.058 4.058 17 C -0.173 4.173 18 C -0.163 4.163 19 C -0.150 4.150 20 C -0.073 4.073 21 C -0.122 4.122 22 H 0.099 0.901 23 H 0.122 0.878 24 H 0.123 0.877 25 H 0.104 0.896 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.096 0.904 29 H 0.106 0.894 30 H 0.106 0.894 31 H 0.112 0.888 32 H 0.103 0.897 33 H 0.122 0.878 34 H 0.103 0.897 35 H 0.099 0.901 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.625 -10.995 -2.292 11.249 hybrid contribution -0.637 1.493 0.074 1.625 sum -0.012 -9.502 -2.219 9.758 Atomic orbital electron populations 1.69885 1.09041 1.30564 1.35685 1.26749 0.95477 1.04469 0.91085 0.85200 0.79196 0.75904 0.79450 1.18638 1.18797 1.18313 1.19767 0.98239 0.92434 1.42475 0.90887 1.17710 0.91794 0.92408 0.89150 1.21190 1.00816 0.96738 1.02964 1.20221 0.98753 0.91682 0.99432 1.20842 1.01136 0.95176 1.10178 1.19304 0.93644 0.89377 0.96640 1.20393 1.04360 0.91093 1.08634 1.60583 1.56103 1.00815 1.03252 1.23327 0.96371 0.99193 0.86898 1.23003 0.99578 0.98055 0.96665 1.22724 1.02493 0.94939 0.96102 1.22951 1.02509 0.93434 0.96075 1.23135 0.93368 0.95611 0.95147 1.21378 0.98368 0.90602 1.01847 0.90099 0.87784 0.87682 0.89606 0.93686 0.93750 0.90436 0.89378 0.89412 0.88794 0.89730 0.87773 0.89674 0.90088 0.91698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.40 10.97 21.82 0.24 -44.16 16 2 C 0.04 1.92 5.13 85.25 0.44 2.36 16 3 Si 0.98 39.19 29.60 68.60 2.03 41.22 16 4 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 5 H -0.26 -9.92 7.11 99.48 0.71 -9.22 16 6 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 7 C -0.50 -28.15 9.04 23.46 0.21 -27.93 16 8 H 0.07 4.00 7.91 -2.91 -0.02 3.97 16 9 C 0.09 5.26 5.56 -21.35 -0.12 5.14 16 10 C -0.20 -10.91 8.70 22.75 0.20 -10.71 16 11 C -0.08 -4.03 10.01 22.17 0.22 -3.80 16 12 C -0.27 -12.25 6.25 -19.23 -0.12 -12.37 16 13 C 0.11 4.93 5.47 38.24 0.21 5.14 16 14 C -0.22 -11.84 9.66 22.93 0.22 -11.62 16 15 N -0.49 -18.33 5.01 -662.17 -3.32 -21.65 16 16 C 0.05 1.59 2.99 45.44 0.14 1.72 16 17 C -0.13 -4.29 7.64 31.21 0.24 -4.05 16 18 C -0.12 -2.80 8.09 31.21 0.25 -2.54 16 19 C -0.11 -2.56 6.56 31.12 0.20 -2.35 16 20 C 0.05 1.63 6.80 86.65 0.59 2.22 16 21 C -0.08 -2.85 6.97 30.69 0.21 -2.64 16 22 H 0.29 13.93 8.30 -92.71 -0.77 13.16 16 23 H 0.10 5.95 6.17 -2.91 -0.02 5.93 16 24 H 0.11 4.58 8.06 -2.91 -0.02 4.56 16 25 H 0.09 4.50 8.06 -2.91 -0.02 4.47 16 26 H 0.05 1.64 8.14 -2.38 -0.02 1.62 16 27 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 29 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.10 2.45 6.87 -2.39 -0.02 2.43 16 34 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 35 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 36 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -62.76 292.55 2.90 -59.87 By element: Atomic # 1 Polarization: 25.12 SS G_CDS: 1.05 Total: 26.17 kcal Atomic # 6 Polarization: -64.34 SS G_CDS: 2.90 Total: -61.44 kcal Atomic # 7 Polarization: -62.74 SS G_CDS: -3.08 Total: -65.82 kcal Atomic # 14 Polarization: 39.19 SS G_CDS: 2.03 Total: 41.22 kcal Total: -62.76 2.90 -59.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259940635.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.405 kcal (2) G-P(sol) polarization free energy of solvation -62.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.866 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds