Wall clock time and date at job start Mon Mar 30 2020 05:31:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 120.00317 * 2 1 4 4 H 1.48500 * 109.46689 * 266.93606 * 3 2 1 5 5 H 1.48494 * 109.46915 * 26.93063 * 3 2 1 6 6 H 1.48490 * 109.47222 * 146.93257 * 3 2 1 7 7 C 1.37875 * 119.99553 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00653 * 6.70417 * 7 2 1 9 9 C 1.50704 * 119.99734 * 186.69987 * 7 2 1 10 10 H 1.08991 * 110.55204 * 332.55952 * 9 7 2 11 11 C 1.55057 * 110.49521 * 95.19772 * 9 7 2 12 12 C 1.55314 * 105.02154 * 121.47491 * 11 9 7 13 13 N 1.46697 * 103.38020 * 23.69038 * 12 11 9 14 14 C 1.37620 * 118.81065 * 194.01773 * 13 12 11 15 15 C 1.39175 * 119.97829 * 331.64639 * 14 13 12 16 16 C 1.37890 * 120.41836 * 181.01433 * 15 14 13 17 17 C 1.38311 * 119.78449 * 0.04299 * 16 15 14 18 18 C 1.37974 * 120.06741 * 359.53608 * 17 16 15 19 19 C 1.38650 * 120.74274 * 0.08009 * 18 17 16 20 20 C 1.50752 * 118.00427 * 180.91668 * 19 18 17 21 21 C 1.53461 * 111.43890 * 186.33141 * 20 19 18 22 22 C 1.48471 * 104.01642 * 317.76127 * 13 12 11 23 23 H 1.09001 * 110.62905 * 285.09188 * 22 13 12 24 24 H 0.96998 * 119.99747 * 359.97438 * 1 2 3 25 25 H 1.09006 * 110.35186 * 2.56153 * 11 9 7 26 26 H 1.09003 * 110.34899 * 240.39160 * 11 9 7 27 27 H 1.09000 * 110.63597 * 142.16758 * 12 11 9 28 28 H 1.09000 * 110.63725 * 265.21625 * 12 11 9 29 29 H 1.08005 * 119.78796 * 1.03830 * 15 14 13 30 30 H 1.07999 * 120.10964 * 180.02562 * 16 15 14 31 31 H 1.07998 * 119.96631 * 179.54796 * 17 16 15 32 32 H 1.08006 * 119.62949 * 180.09514 * 18 17 16 33 33 H 1.09003 * 109.08372 * 65.82660 * 20 19 18 34 34 H 1.09003 * 109.08298 * 306.83802 * 20 19 18 35 35 H 1.09001 * 109.99166 * 201.29866 * 21 20 19 36 36 H 1.09001 * 110.06919 * 79.97005 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5615 2.0089 -1.3981 5 1 1.4158 2.6705 0.6341 6 1 3.5128 1.4597 0.7639 7 6 2.0044 -1.1941 -0.0005 8 1 1.4700 -2.1262 -0.1101 9 6 3.5037 -1.1987 0.1517 10 1 3.9293 -0.2680 -0.2234 11 6 3.8981 -1.4167 1.6354 12 6 4.7733 -2.6997 1.6349 13 7 5.2874 -2.7595 0.2623 14 6 5.8680 -3.9269 -0.1783 15 6 6.4932 -4.7779 0.7283 16 6 7.0959 -5.9395 0.2939 17 6 7.0796 -6.2605 -1.0513 18 6 6.4539 -5.4252 -1.9538 19 6 5.8371 -4.2582 -1.5295 20 6 5.1538 -3.4019 -2.5651 21 6 4.6607 -2.0794 -1.9628 22 6 4.1152 -2.4036 -0.5765 23 1 3.4127 -3.2354 -0.6275 24 1 -0.4850 0.8400 0.0004 25 1 3.0077 -1.5655 2.2464 26 1 4.4721 -0.5664 2.0039 27 1 5.5922 -2.6064 2.3483 28 1 4.1674 -3.5782 1.8568 29 1 6.5061 -4.5269 1.7787 30 1 7.5793 -6.5965 1.0018 31 1 7.5571 -7.1659 -1.3957 32 1 6.4441 -5.6835 -3.0024 33 1 4.3026 -3.9471 -2.9731 34 1 5.8568 -3.1869 -3.3700 35 1 3.8708 -1.6582 -2.5848 36 1 5.4875 -1.3737 -1.8823 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259953829.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:31:00 Heat of formation + Delta-G solvation = 7.860777 kcal Electronic energy + Delta-G solvation = -17613.896540 eV Core-core repulsion = 15061.294930 eV Total energy + Delta-G solvation = -2552.601610 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.82353 -38.81315 -35.41903 -35.13304 -33.32811 -31.23732 -29.71422 -29.12519 -26.02652 -24.28694 -23.76875 -22.41879 -21.10187 -20.32557 -19.00007 -18.00338 -16.86275 -16.47708 -16.06130 -15.80460 -15.42982 -15.14703 -14.77194 -14.49586 -14.15921 -14.04744 -13.46702 -13.42593 -13.03506 -12.86486 -12.68279 -12.38944 -12.08262 -12.04084 -11.95743 -11.66680 -11.33904 -11.25622 -11.01273 -10.76110 -10.66301 -9.58004 -8.51914 -8.29590 -6.32927 0.51438 0.57740 1.36425 1.38062 1.49045 2.35500 2.75182 3.04475 3.11582 3.70235 3.79877 3.97455 4.12922 4.15432 4.24566 4.31364 4.41078 4.47483 4.51531 4.57134 4.65550 4.76615 4.89140 5.00133 5.01876 5.04699 5.10598 5.21068 5.24636 5.31642 5.42384 5.49587 5.61258 5.67853 5.72102 6.03371 6.11594 6.32398 6.59519 6.72934 7.32147 8.86935 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.038223 B = 0.006940 C = 0.006434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.372579 B = 4033.796687 C = 4350.996758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.018 3.982 3 Si 0.940 3.060 4 H -0.266 1.266 5 H -0.288 1.288 6 H -0.246 1.246 7 C -0.509 4.509 8 H 0.029 0.971 9 C 0.018 3.982 10 H 0.044 0.956 11 C -0.124 4.124 12 C 0.065 3.935 13 N -0.501 5.501 14 C 0.116 3.884 15 C -0.184 4.184 16 C -0.096 4.096 17 C -0.160 4.160 18 C -0.097 4.097 19 C -0.146 4.146 20 C -0.070 4.070 21 C -0.108 4.108 22 C 0.092 3.908 23 H 0.033 0.967 24 H 0.266 0.734 25 H 0.058 0.942 26 H 0.064 0.936 27 H 0.098 0.902 28 H 0.040 0.960 29 H 0.124 0.876 30 H 0.146 0.854 31 H 0.146 0.854 32 H 0.140 0.860 33 H 0.072 0.928 34 H 0.093 0.907 35 H 0.071 0.929 36 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.262 -8.569 -1.585 17.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.180 4.180 3 Si 0.764 3.236 4 H -0.191 1.191 5 H -0.214 1.214 6 H -0.169 1.169 7 C -0.547 4.547 8 H 0.047 0.953 9 C -0.001 4.001 10 H 0.062 0.938 11 C -0.163 4.163 12 C -0.061 4.061 13 N -0.213 5.213 14 C 0.015 3.985 15 C -0.205 4.205 16 C -0.115 4.115 17 C -0.179 4.179 18 C -0.116 4.116 19 C -0.149 4.149 20 C -0.107 4.107 21 C -0.146 4.146 22 C -0.014 4.014 23 H 0.051 0.949 24 H 0.075 0.925 25 H 0.077 0.923 26 H 0.083 0.917 27 H 0.116 0.884 28 H 0.058 0.942 29 H 0.142 0.858 30 H 0.163 0.837 31 H 0.164 0.836 32 H 0.158 0.842 33 H 0.090 0.910 34 H 0.111 0.889 35 H 0.090 0.910 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 15.451 -8.055 -1.572 17.496 hybrid contribution -0.918 0.365 0.238 1.016 sum 14.533 -7.691 -1.334 16.497 Atomic orbital electron populations 1.70056 1.08249 1.28123 1.52213 1.25864 0.95338 1.02809 0.93940 0.85835 0.79505 0.78799 0.79496 1.19063 1.21447 1.16943 1.21106 0.91096 0.92942 1.49553 0.95290 1.19730 0.93558 0.94393 0.92467 0.93792 1.22946 0.98006 0.96405 0.98945 1.22726 0.97588 0.97656 0.88121 1.58999 1.27819 1.29068 1.05421 1.18730 0.97538 0.88325 0.93859 1.21082 1.04140 0.96221 0.99023 1.21222 0.97812 0.95753 0.96693 1.21241 1.02374 1.01127 0.93196 1.21197 0.96554 0.93017 1.00814 1.20010 1.03845 0.98332 0.92742 1.20498 0.99760 0.94053 0.96413 1.21553 1.00510 0.97850 0.94674 1.22415 0.87922 0.97408 0.93624 0.94938 0.92476 0.92286 0.91718 0.88421 0.94159 0.85810 0.83660 0.83614 0.84213 0.90954 0.88875 0.91012 0.91033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.26 13.96 21.45 0.30 -57.96 16 2 C 0.02 1.03 5.47 84.65 0.46 1.49 16 3 Si 0.94 43.44 27.11 68.60 1.86 45.30 16 4 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 5 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 6 H -0.25 -10.58 6.70 99.48 0.67 -9.91 16 7 C -0.51 -28.48 8.69 25.60 0.22 -28.26 16 8 H 0.03 1.82 7.94 -2.91 -0.02 1.80 16 9 C 0.02 0.83 2.25 -10.67 -0.02 0.81 16 10 H 0.04 2.02 5.26 -2.39 -0.01 2.01 16 11 C -0.12 -5.08 6.69 32.09 0.21 -4.86 16 12 C 0.06 2.27 5.58 87.14 0.49 2.75 16 13 N -0.50 -18.47 4.55 -665.18 -3.02 -21.49 16 14 C 0.12 3.90 5.90 38.68 0.23 4.13 16 15 C -0.18 -5.27 9.31 22.41 0.21 -5.06 16 16 C -0.10 -2.25 10.05 22.20 0.22 -2.03 16 17 C -0.16 -3.54 10.04 22.22 0.22 -3.32 16 18 C -0.10 -2.42 9.61 22.31 0.21 -2.21 16 19 C -0.15 -4.51 5.74 -19.53 -0.11 -4.62 16 20 C -0.07 -2.08 5.75 30.02 0.17 -1.91 16 21 C -0.11 -3.84 5.75 30.57 0.18 -3.67 16 22 C 0.09 3.79 1.98 44.60 0.09 3.88 16 23 H 0.03 1.50 7.79 -2.39 -0.02 1.48 16 24 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 25 H 0.06 2.56 7.73 -2.38 -0.02 2.54 16 26 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 27 H 0.10 2.87 7.81 -2.39 -0.02 2.85 16 28 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.12 3.27 7.01 -2.91 -0.02 3.25 16 30 H 0.15 2.48 8.06 -2.91 -0.02 2.45 16 31 H 0.15 2.28 8.06 -2.91 -0.02 2.26 16 32 H 0.14 2.72 8.05 -2.91 -0.02 2.69 16 33 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 35 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 36 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 Total: -1.00 -64.35 284.19 2.93 -61.42 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: 1.01 Total: 15.59 kcal Atomic # 6 Polarization: -45.65 SS G_CDS: 2.78 Total: -42.86 kcal Atomic # 7 Polarization: -76.72 SS G_CDS: -2.73 Total: -79.45 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 1.86 Total: 45.30 kcal Total: -64.35 2.93 -61.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259953829.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.282 kcal (2) G-P(sol) polarization free energy of solvation -64.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds