Wall clock time and date at job start Mon Mar 30 2020 05:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48498 * 109.47416 * 240.00244 * 3 2 1 5 5 H 1.48508 * 109.46609 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46903 * 119.99829 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99806 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99686 * 359.72095 * 7 2 1 10 10 H 1.08997 * 110.44732 * 298.89066 * 9 7 2 11 11 C 1.55063 * 110.49557 * 61.45896 * 9 7 2 12 12 C 1.55309 * 104.93242 * 115.90775 * 11 9 7 13 13 N 1.46695 * 103.37386 * 336.25223 * 12 11 9 14 14 C 1.37605 * 118.83226 * 166.04329 * 13 12 11 15 15 C 1.39178 * 119.97006 * 28.07238 * 14 13 12 16 16 C 1.37895 * 120.41210 * 179.04217 * 15 14 13 17 17 C 1.38318 * 119.78740 * 0.02562 * 16 15 14 18 18 C 1.37974 * 120.06247 * 0.36894 * 17 16 15 19 19 C 1.38652 * 120.74217 * 0.04164 * 18 17 16 20 20 C 1.50757 * 118.00800 * 178.69227 * 19 18 17 21 21 C 1.53472 * 111.44388 * 173.74583 * 20 19 18 22 22 C 1.48469 * 104.02704 * 42.24517 * 13 12 11 23 23 H 1.09007 * 110.63443 * 73.98969 * 22 13 12 24 24 H 0.97000 * 119.99651 * 359.97438 * 1 2 3 25 25 H 1.09000 * 110.34476 * 234.76428 * 11 9 7 26 26 H 1.08995 * 110.34916 * 357.03520 * 11 9 7 27 27 H 1.08994 * 110.64171 * 94.72821 * 12 11 9 28 28 H 1.09007 * 110.63254 * 217.62293 * 12 11 9 29 29 H 1.08002 * 119.79531 * 359.06994 * 15 14 13 30 30 H 1.08001 * 120.10804 * 180.02562 * 16 15 14 31 31 H 1.07995 * 119.97103 * 180.39022 * 17 16 15 32 32 H 1.08003 * 119.62600 * 180.02562 * 18 17 16 33 33 H 1.09000 * 109.08518 * 294.24710 * 20 19 18 34 34 H 1.09001 * 109.08725 * 53.30658 * 20 19 18 35 35 H 1.08994 * 109.98346 * 158.78112 * 21 20 19 36 36 H 1.09002 * 109.98500 * 280.13407 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 0.0052 10 1 0.6371 -2.5804 0.9022 11 6 0.3732 -2.6248 -1.2668 12 6 0.9595 -3.8378 -2.0394 13 7 2.3416 -3.9136 -1.5537 14 6 3.0737 -5.0501 -1.8102 15 6 2.7945 -5.8174 -2.9373 16 6 3.5353 -6.9472 -3.2137 17 6 4.5620 -7.3203 -2.3652 18 6 4.8382 -6.5681 -1.2419 19 6 4.0957 -5.4348 -0.9477 20 6 4.4309 -4.6759 0.3111 21 6 3.6278 -3.3718 0.4108 22 6 2.2227 -3.6803 -0.0923 23 1 1.8091 -4.5580 0.4045 24 1 -0.4850 0.8401 0.0004 25 1 -0.6647 -2.8153 -0.9937 26 1 0.4473 -1.7197 -1.8694 27 1 0.4152 -4.7495 -1.7935 28 1 0.9367 -3.6562 -3.1140 29 1 1.9929 -5.5260 -3.5997 30 1 3.3146 -7.5388 -4.0899 31 1 5.1481 -8.2010 -2.5822 32 1 5.6417 -6.8657 -0.5845 33 1 4.2044 -5.3008 1.1750 34 1 5.4949 -4.4390 0.3118 35 1 3.5878 -3.0374 1.4474 36 1 4.0860 -2.6036 -0.2122 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259953835.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:31:03 Heat of formation + Delta-G solvation = 28.488586 kcal Electronic energy + Delta-G solvation = -17723.596889 eV Core-core repulsion = 15171.889768 eV Total energy + Delta-G solvation = -2551.707121 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.37152 -37.39228 -33.95051 -33.33749 -31.17250 -29.91736 -27.88361 -27.26161 -24.35994 -22.98425 -22.21091 -20.99887 -19.54636 -18.75414 -16.77138 -16.15732 -15.23938 -14.90352 -14.60962 -14.22893 -13.96103 -13.85589 -13.07386 -12.82160 -12.54670 -12.11212 -12.03032 -11.70491 -11.44443 -11.09516 -10.85623 -10.73343 -10.61071 -10.52810 -10.14327 -9.98550 -9.79821 -9.41478 -9.11943 -8.69874 -8.37838 -8.35969 -7.05099 -5.99938 -4.01209 1.71523 1.83694 3.33910 3.38416 3.41698 4.05025 4.45752 4.53324 5.05469 5.19767 5.31020 5.35434 5.45055 5.64980 5.66874 5.73774 5.83370 5.92752 5.99444 6.08282 6.10259 6.20577 6.36070 6.38641 6.56067 6.62235 6.76680 6.81055 6.90295 6.94449 7.04405 7.14573 7.26746 7.44548 7.65164 7.84640 7.98593 8.11527 8.45268 8.99080 9.62160 11.09741 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.035619 B = 0.007099 C = 0.006455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.908638 B = 3943.275608 C = 4336.517706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.060 3.940 3 Si 0.889 3.111 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.278 1.278 7 C -0.501 4.501 8 H 0.066 0.934 9 C 0.053 3.947 10 H 0.035 0.965 11 C -0.094 4.094 12 C 0.051 3.949 13 N -0.480 5.480 14 C 0.156 3.844 15 C -0.180 4.180 16 C -0.094 4.094 17 C -0.173 4.173 18 C -0.093 4.093 19 C -0.131 4.131 20 C -0.079 4.079 21 C -0.098 4.098 22 C 0.083 3.917 23 H 0.039 0.961 24 H 0.259 0.741 25 H 0.046 0.954 26 H 0.077 0.923 27 H 0.035 0.965 28 H 0.068 0.932 29 H 0.117 0.883 30 H 0.114 0.886 31 H 0.112 0.888 32 H 0.113 0.887 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.361 -10.961 -2.347 12.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.141 4.141 3 Si 0.717 3.283 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.203 1.203 7 C -0.539 4.539 8 H 0.084 0.916 9 C 0.034 3.966 10 H 0.053 0.947 11 C -0.132 4.132 12 C -0.075 4.075 13 N -0.189 5.189 14 C 0.053 3.947 15 C -0.201 4.201 16 C -0.113 4.113 17 C -0.193 4.193 18 C -0.112 4.112 19 C -0.135 4.135 20 C -0.116 4.116 21 C -0.135 4.135 22 C -0.022 4.022 23 H 0.057 0.943 24 H 0.069 0.931 25 H 0.065 0.935 26 H 0.096 0.904 27 H 0.054 0.946 28 H 0.087 0.913 29 H 0.135 0.865 30 H 0.132 0.868 31 H 0.130 0.870 32 H 0.131 0.869 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 5.384 -10.368 -2.570 11.962 hybrid contribution 0.102 0.351 -0.023 0.366 sum 5.486 -10.017 -2.593 11.711 Atomic orbital electron populations 1.69966 1.05856 1.26528 1.50842 1.24972 0.94799 0.98984 0.95389 0.86710 0.79615 0.83393 0.78588 1.20350 1.21498 1.20342 1.21183 0.93226 0.89605 1.49936 0.91616 1.19304 0.91681 0.91738 0.93832 0.94702 1.22594 0.97271 0.95077 0.98291 1.22919 0.85371 0.99298 0.99871 1.58655 1.16322 1.29745 1.14188 1.18574 0.94649 0.87465 0.94003 1.20872 1.03047 0.96936 0.99259 1.20808 0.95497 0.96296 0.98717 1.20746 1.00352 1.01303 0.96881 1.20858 0.98706 0.94547 0.97049 1.19760 0.98411 0.97641 0.97658 1.20628 1.00279 0.96805 0.93935 1.21540 0.94330 0.95736 1.01923 1.22599 0.97239 0.98727 0.83622 0.94262 0.93102 0.93522 0.90443 0.94641 0.91317 0.86536 0.86804 0.87024 0.86857 0.91794 0.91477 0.90807 0.89759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.98 12.29 55.43 0.68 -24.29 16 2 C 0.06 1.61 5.09 -17.82 -0.09 1.52 16 3 Si 0.89 21.06 29.54 -169.99 -5.02 16.04 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.50 -13.11 8.00 -34.44 -0.28 -13.39 16 8 H 0.07 1.70 5.37 -52.49 -0.28 1.42 16 9 C 0.05 1.28 2.93 -90.55 -0.27 1.01 16 10 H 0.03 0.90 8.14 -51.93 -0.42 0.47 16 11 C -0.09 -2.13 5.87 -24.42 -0.14 -2.27 16 12 C 0.05 0.99 5.57 -2.71 -0.02 0.97 16 13 N -0.48 -9.74 4.54 -161.78 -0.74 -10.47 16 14 C 0.16 2.90 5.90 -84.59 -0.50 2.40 16 15 C -0.18 -2.97 9.31 -39.36 -0.37 -3.33 16 16 C -0.09 -1.35 10.05 -39.68 -0.40 -1.75 16 17 C -0.17 -2.40 10.04 -39.65 -0.40 -2.79 16 18 C -0.09 -1.37 9.61 -39.53 -0.38 -1.75 16 19 C -0.13 -2.24 5.74 -104.10 -0.60 -2.84 16 20 C -0.08 -1.27 5.76 -27.61 -0.16 -1.43 16 21 C -0.10 -1.85 4.54 -26.79 -0.12 -1.97 16 22 C 0.08 1.71 2.36 -67.02 -0.16 1.56 16 23 H 0.04 0.79 8.11 -51.93 -0.42 0.37 16 24 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 25 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 26 H 0.08 1.96 7.15 -51.93 -0.37 1.59 16 27 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.07 1.25 7.81 -51.93 -0.41 0.84 16 29 H 0.12 1.82 7.00 -52.49 -0.37 1.45 16 30 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 31 H 0.11 1.25 8.06 -52.49 -0.42 0.82 16 32 H 0.11 1.39 8.05 -52.48 -0.42 0.97 16 33 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 36 H 0.08 1.76 6.58 -51.93 -0.34 1.41 16 LS Contribution 281.82 15.07 4.25 4.25 Total: -1.00 -27.74 281.82 -9.83 -37.56 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -5.13 Total: 0.99 kcal Atomic # 6 Polarization: -20.20 SS G_CDS: -3.87 Total: -24.07 kcal Atomic # 7 Polarization: -34.71 SS G_CDS: -0.05 Total: -34.77 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -27.74 -9.83 -37.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259953835.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.049 kcal (2) G-P(sol) polarization free energy of solvation -27.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds