Wall clock time and date at job start Mon Mar 30 2020 05:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48498 * 109.47416 * 240.00244 * 3 2 1 5 5 H 1.48508 * 109.46609 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46903 * 119.99829 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99806 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99686 * 359.72095 * 7 2 1 10 10 H 1.08997 * 110.44732 * 298.89066 * 9 7 2 11 11 C 1.55063 * 110.49557 * 61.45896 * 9 7 2 12 12 C 1.55309 * 104.93242 * 115.90775 * 11 9 7 13 13 N 1.46695 * 103.37386 * 336.25223 * 12 11 9 14 14 C 1.37605 * 118.83226 * 166.04329 * 13 12 11 15 15 C 1.39178 * 119.97006 * 28.07238 * 14 13 12 16 16 C 1.37895 * 120.41210 * 179.04217 * 15 14 13 17 17 C 1.38318 * 119.78740 * 0.02562 * 16 15 14 18 18 C 1.37974 * 120.06247 * 0.36894 * 17 16 15 19 19 C 1.38652 * 120.74217 * 0.04164 * 18 17 16 20 20 C 1.50757 * 118.00800 * 178.69227 * 19 18 17 21 21 C 1.53472 * 111.44388 * 173.74583 * 20 19 18 22 22 C 1.48469 * 104.02704 * 42.24517 * 13 12 11 23 23 H 1.09007 * 110.63443 * 73.98969 * 22 13 12 24 24 H 0.97000 * 119.99651 * 359.97438 * 1 2 3 25 25 H 1.09000 * 110.34476 * 234.76428 * 11 9 7 26 26 H 1.08995 * 110.34916 * 357.03520 * 11 9 7 27 27 H 1.08994 * 110.64171 * 94.72821 * 12 11 9 28 28 H 1.09007 * 110.63254 * 217.62293 * 12 11 9 29 29 H 1.08002 * 119.79531 * 359.06994 * 15 14 13 30 30 H 1.08001 * 120.10804 * 180.02562 * 16 15 14 31 31 H 1.07995 * 119.97103 * 180.39022 * 17 16 15 32 32 H 1.08003 * 119.62600 * 180.02562 * 18 17 16 33 33 H 1.09000 * 109.08518 * 294.24710 * 20 19 18 34 34 H 1.09001 * 109.08725 * 53.30658 * 20 19 18 35 35 H 1.08994 * 109.98346 * 158.78112 * 21 20 19 36 36 H 1.09002 * 109.98500 * 280.13407 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 0.0052 10 1 0.6371 -2.5804 0.9022 11 6 0.3732 -2.6248 -1.2668 12 6 0.9595 -3.8378 -2.0394 13 7 2.3416 -3.9136 -1.5537 14 6 3.0737 -5.0501 -1.8102 15 6 2.7945 -5.8174 -2.9373 16 6 3.5353 -6.9472 -3.2137 17 6 4.5620 -7.3203 -2.3652 18 6 4.8382 -6.5681 -1.2419 19 6 4.0957 -5.4348 -0.9477 20 6 4.4309 -4.6759 0.3111 21 6 3.6278 -3.3718 0.4108 22 6 2.2227 -3.6803 -0.0923 23 1 1.8091 -4.5580 0.4045 24 1 -0.4850 0.8401 0.0004 25 1 -0.6647 -2.8153 -0.9937 26 1 0.4473 -1.7197 -1.8694 27 1 0.4152 -4.7495 -1.7935 28 1 0.9367 -3.6562 -3.1140 29 1 1.9929 -5.5260 -3.5997 30 1 3.3146 -7.5388 -4.0899 31 1 5.1481 -8.2010 -2.5822 32 1 5.6417 -6.8657 -0.5845 33 1 4.2044 -5.3008 1.1750 34 1 5.4949 -4.4390 0.3118 35 1 3.5878 -3.0374 1.4474 36 1 4.0860 -2.6036 -0.2122 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259953835.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:31:03 Heat of formation + Delta-G solvation = 14.242789 kcal Electronic energy + Delta-G solvation = -17724.214634 eV Core-core repulsion = 15171.889768 eV Total energy + Delta-G solvation = -2552.324865 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.78351 -38.77327 -35.33556 -35.14129 -32.88017 -31.25237 -29.31408 -28.86627 -26.25364 -24.31372 -23.62630 -22.43998 -21.11779 -20.36581 -18.11190 -17.95506 -16.68938 -16.62226 -16.19268 -15.70919 -15.35148 -15.12350 -14.64561 -14.21027 -14.06290 -13.61693 -13.53088 -13.29574 -12.91670 -12.77045 -12.72009 -12.35836 -12.17755 -11.96601 -11.82589 -11.72220 -11.25087 -11.05649 -10.71142 -10.58095 -10.43201 -9.54064 -8.41004 -8.07334 -6.13182 0.55120 0.63064 1.43286 1.44457 1.51150 2.46907 2.80822 3.14566 3.24990 3.78343 3.90874 4.03790 4.16851 4.27149 4.33261 4.38842 4.48650 4.50553 4.56799 4.62301 4.72216 4.84488 5.02288 5.05620 5.10843 5.13903 5.25084 5.34103 5.35943 5.51075 5.61072 5.66007 5.74954 5.83469 5.87446 6.10222 6.22171 6.47824 6.70343 6.93230 7.52523 9.02013 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.035619 B = 0.007099 C = 0.006455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.908638 B = 3943.275608 C = 4336.517706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.010 3.990 3 Si 0.947 3.053 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.269 1.269 7 C -0.506 4.506 8 H 0.066 0.934 9 C 0.044 3.956 10 H 0.006 0.994 11 C -0.087 4.087 12 C 0.063 3.937 13 N -0.496 5.496 14 C 0.120 3.880 15 C -0.190 4.190 16 C -0.095 4.095 17 C -0.164 4.164 18 C -0.094 4.094 19 C -0.148 4.148 20 C -0.072 4.072 21 C -0.094 4.094 22 C 0.090 3.910 23 H 0.041 0.959 24 H 0.257 0.743 25 H 0.040 0.960 26 H 0.044 0.956 27 H 0.049 0.951 28 H 0.080 0.920 29 H 0.118 0.882 30 H 0.144 0.856 31 H 0.146 0.854 32 H 0.141 0.859 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.072 0.928 36 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.438 -13.039 -2.934 15.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.188 4.188 3 Si 0.774 3.226 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.195 1.195 7 C -0.545 4.545 8 H 0.084 0.916 9 C 0.025 3.975 10 H 0.024 0.976 11 C -0.126 4.126 12 C -0.063 4.063 13 N -0.207 5.207 14 C 0.019 3.981 15 C -0.211 4.211 16 C -0.113 4.113 17 C -0.183 4.183 18 C -0.113 4.113 19 C -0.152 4.152 20 C -0.109 4.109 21 C -0.132 4.132 22 C -0.016 4.016 23 H 0.059 0.941 24 H 0.066 0.934 25 H 0.059 0.941 26 H 0.063 0.937 27 H 0.067 0.933 28 H 0.098 0.902 29 H 0.136 0.864 30 H 0.162 0.838 31 H 0.164 0.836 32 H 0.159 0.841 33 H 0.099 0.901 34 H 0.104 0.896 35 H 0.091 0.909 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.484 -12.470 -3.161 14.883 hybrid contribution -0.520 0.878 0.133 1.029 sum 6.964 -11.592 -3.028 13.858 Atomic orbital electron populations 1.70089 1.07087 1.26963 1.52128 1.25683 0.95542 1.02059 0.95495 0.85778 0.78423 0.79773 0.78655 1.20323 1.21421 1.19455 1.21493 0.93418 0.90664 1.48881 0.91613 1.19259 0.92369 0.92740 0.93087 0.97578 1.22365 0.97078 0.95366 0.97791 1.22761 0.85608 0.98016 0.99880 1.58684 1.16501 1.32055 1.13435 1.18799 0.95612 0.87972 0.95752 1.21049 1.03695 0.97632 0.98767 1.21190 0.94936 0.95488 0.99697 1.21213 0.99656 1.01694 0.95743 1.21190 0.98797 0.93496 0.97790 1.20002 0.98599 0.98745 0.97814 1.20576 1.00632 0.95153 0.94540 1.21435 0.93646 0.97003 1.01074 1.22385 0.97322 0.97010 0.84873 0.94123 0.93365 0.94128 0.93682 0.93281 0.90198 0.86395 0.83849 0.83624 0.84091 0.90062 0.89642 0.90917 0.92152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.42 12.29 21.45 0.26 -53.16 16 2 C 0.01 0.56 5.09 84.66 0.43 0.99 16 3 Si 0.95 44.04 29.54 68.60 2.03 46.06 16 4 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 5 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 6 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 7 C -0.51 -27.32 8.00 25.60 0.20 -27.11 16 8 H 0.07 3.48 5.37 -2.92 -0.02 3.47 16 9 C 0.04 2.21 2.93 -10.75 -0.03 2.18 16 10 H 0.01 0.33 8.14 -2.39 -0.02 0.32 16 11 C -0.09 -4.13 5.87 32.09 0.19 -3.95 16 12 C 0.06 2.47 5.57 87.14 0.49 2.95 16 13 N -0.50 -20.15 4.54 -665.76 -3.03 -23.18 16 14 C 0.12 4.29 5.90 38.68 0.23 4.52 16 15 C -0.19 -5.89 9.31 22.41 0.21 -5.68 16 16 C -0.09 -2.35 10.05 22.21 0.22 -2.13 16 17 C -0.16 -3.76 10.04 22.23 0.22 -3.54 16 18 C -0.09 -2.40 9.61 22.31 0.21 -2.18 16 19 C -0.15 -4.72 5.74 -19.53 -0.11 -4.83 16 20 C -0.07 -2.16 5.76 30.02 0.17 -1.99 16 21 C -0.09 -3.55 4.54 30.55 0.14 -3.41 16 22 C 0.09 3.75 2.36 44.50 0.10 3.86 16 23 H 0.04 1.66 8.11 -2.38 -0.02 1.64 16 24 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 25 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 26 H 0.04 2.39 7.15 -2.39 -0.02 2.37 16 27 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.08 2.91 7.81 -2.38 -0.02 2.89 16 29 H 0.12 3.50 7.00 -2.91 -0.02 3.48 16 30 H 0.14 2.67 8.06 -2.91 -0.02 2.64 16 31 H 0.15 2.37 8.06 -2.91 -0.02 2.35 16 32 H 0.14 2.76 8.05 -2.91 -0.02 2.74 16 33 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 36 H 0.06 2.55 6.58 -2.39 -0.02 2.53 16 Total: -1.00 -60.96 281.82 3.00 -57.96 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: 1.06 Total: 12.63 kcal Atomic # 6 Polarization: -43.00 SS G_CDS: 2.68 Total: -40.32 kcal Atomic # 7 Polarization: -73.57 SS G_CDS: -2.76 Total: -76.33 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.06 kcal Total: -60.96 3.00 -57.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259953835.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.203 kcal (2) G-P(sol) polarization free energy of solvation -60.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds