Wall clock time and date at job start Mon Mar 30 2020 05:31:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47209 * 270.00481 * 3 2 1 5 5 H 1.48501 * 109.47358 * 29.99973 * 3 2 1 6 6 H 1.48496 * 109.47341 * 150.00585 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 H 1.09006 * 110.44196 * 59.58364 * 9 7 2 11 11 C 1.55053 * 110.50102 * 297.01343 * 9 7 2 12 12 C 1.55291 * 104.92850 * 238.58798 * 11 9 7 13 13 N 1.46720 * 103.40232 * 336.25244 * 12 11 9 14 14 C 1.37634 * 118.72432 * 165.77824 * 13 12 11 15 15 C 1.39177 * 119.98225 * 27.57235 * 14 13 12 16 16 C 1.37901 * 120.39657 * 178.94569 * 15 14 13 17 17 C 1.38308 * 119.78016 * 359.92164 * 16 15 14 18 18 C 1.37984 * 120.09367 * 0.47475 * 17 16 15 19 19 C 1.38652 * 120.71128 * 0.07420 * 18 17 16 20 20 C 1.50755 * 118.00979 * 177.75510 * 19 18 17 21 21 C 1.53454 * 111.46068 * 173.88823 * 20 19 18 22 22 C 1.48681 * 104.08938 * 42.14466 * 13 12 11 23 23 H 1.09001 * 110.57090 * 74.10167 * 22 13 12 24 24 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 25 25 H 1.08999 * 110.34812 * 357.45319 * 11 9 7 26 26 H 1.09007 * 110.34883 * 119.72580 * 11 9 7 27 27 H 1.09004 * 110.63555 * 94.72457 * 12 11 9 28 28 H 1.08993 * 110.63821 * 217.60979 * 12 11 9 29 29 H 1.07999 * 119.80267 * 358.96203 * 15 14 13 30 30 H 1.07995 * 120.10752 * 179.91027 * 16 15 14 31 31 H 1.08004 * 119.95824 * 180.48959 * 17 16 15 32 32 H 1.07990 * 119.64080 * 180.02562 * 18 17 16 33 33 H 1.08998 * 109.08074 * 294.39905 * 20 19 18 34 34 H 1.08999 * 109.08219 * 53.44369 * 20 19 18 35 35 H 1.09001 * 109.98514 * 158.88263 * 21 20 19 36 36 H 1.09007 * 109.98401 * 280.13925 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 1 0.6092 -2.5720 -0.8725 11 6 0.4140 -2.6369 1.3032 12 6 0.9289 -3.9388 1.9751 13 7 1.4927 -4.6997 0.8545 14 6 2.3022 -5.7786 1.1284 15 6 2.1409 -6.4854 2.3165 16 6 2.9327 -7.5808 2.5898 17 6 3.8918 -7.9801 1.6767 18 6 4.0621 -7.2786 0.5007 19 6 3.2804 -6.1687 0.2188 20 6 3.5527 -5.4173 -1.0595 21 6 2.5114 -4.3151 -1.2955 22 6 2.2254 -3.6808 0.0572 23 1 3.1490 -3.3931 0.5595 24 1 -0.4850 0.8400 0.0004 25 1 0.5833 -1.7807 1.9562 26 1 -0.6454 -2.7278 1.0630 27 1 1.6998 -3.7119 2.7117 28 1 0.1061 -4.4839 2.4374 29 1 1.3909 -6.1742 3.0285 30 1 2.8045 -8.1249 3.5138 31 1 4.5081 -8.8424 1.8842 32 1 4.8128 -7.5971 -0.2072 33 1 4.5431 -4.9658 -1.0033 34 1 3.5266 -6.1158 -1.8959 35 1 2.9101 -3.5664 -1.9801 36 1 1.5987 -4.7466 -1.7064 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259953840.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:31:06 Heat of formation + Delta-G solvation = 21.622646 kcal Electronic energy + Delta-G solvation = -17583.120746 eV Core-core repulsion = 15031.115895 eV Total energy + Delta-G solvation = -2552.004851 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.37390 -37.37813 -34.03363 -33.36964 -31.23161 -29.91052 -27.94998 -27.40195 -24.32064 -22.95552 -22.27266 -21.00012 -19.59060 -18.69462 -16.97747 -16.13547 -15.33901 -14.88988 -14.47824 -14.45901 -14.04726 -13.78228 -13.19089 -12.86017 -12.43814 -12.23412 -12.07908 -11.79711 -11.39886 -11.13957 -10.96353 -10.73197 -10.64524 -10.59332 -10.37380 -9.95310 -9.82245 -9.41690 -9.16329 -8.84333 -8.44853 -8.41040 -7.12990 -6.07322 -4.11495 1.68118 1.79879 3.27243 3.34578 3.37301 4.01438 4.37060 4.54450 5.01217 5.15600 5.25604 5.29832 5.39953 5.60241 5.62272 5.68940 5.79445 5.94867 5.95720 6.07120 6.16772 6.20026 6.31833 6.32503 6.49485 6.57015 6.74805 6.77751 6.80006 6.86400 7.08580 7.10892 7.22614 7.51777 7.58526 7.75939 7.93795 8.03139 8.38272 8.90964 9.53235 11.02115 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.037187 B = 0.006547 C = 0.006074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.780158 B = 4275.940520 C = 4608.951188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.065 3.935 3 Si 0.890 3.110 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.517 4.517 8 H 0.056 0.944 9 C 0.058 3.942 10 H 0.039 0.961 11 C -0.093 4.093 12 C 0.050 3.950 13 N -0.496 5.496 14 C 0.155 3.845 15 C -0.177 4.177 16 C -0.095 4.095 17 C -0.171 4.171 18 C -0.093 4.093 19 C -0.130 4.130 20 C -0.075 4.075 21 C -0.106 4.106 22 C 0.082 3.918 23 H 0.056 0.944 24 H 0.261 0.739 25 H 0.070 0.930 26 H 0.051 0.949 27 H 0.041 0.959 28 H 0.066 0.934 29 H 0.117 0.883 30 H 0.115 0.885 31 H 0.112 0.888 32 H 0.114 0.886 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.077 0.923 36 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.142 -11.198 2.056 12.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.137 4.137 3 Si 0.717 3.283 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.555 4.555 8 H 0.074 0.926 9 C 0.039 3.961 10 H 0.058 0.942 11 C -0.132 4.132 12 C -0.075 4.075 13 N -0.206 5.206 14 C 0.052 3.948 15 C -0.199 4.199 16 C -0.114 4.114 17 C -0.190 4.190 18 C -0.112 4.112 19 C -0.133 4.133 20 C -0.112 4.112 21 C -0.144 4.144 22 C -0.023 4.023 23 H 0.074 0.926 24 H 0.071 0.929 25 H 0.088 0.912 26 H 0.070 0.930 27 H 0.060 0.940 28 H 0.085 0.915 29 H 0.135 0.865 30 H 0.133 0.867 31 H 0.130 0.870 32 H 0.132 0.868 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.095 0.905 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.517 -11.186 1.801 12.197 hybrid contribution 0.872 0.994 0.535 1.427 sum 5.389 -10.192 2.336 11.763 Atomic orbital electron populations 1.69974 1.05864 1.26645 1.49900 1.24948 0.94819 0.99007 0.94973 0.86633 0.79888 0.83553 0.78177 1.20610 1.21232 1.19939 1.21121 0.92754 0.90181 1.51461 0.92562 1.19252 0.92112 0.90425 0.94352 0.94241 1.22584 0.99098 0.92721 0.98751 1.22932 0.97936 0.95491 0.91175 1.59006 1.32150 1.07985 1.21463 1.18538 0.89899 0.93857 0.92466 1.20892 1.03069 0.99044 0.96866 1.20820 0.95602 0.96199 0.98742 1.20763 1.01077 1.01585 0.95613 1.20860 0.98582 0.94857 0.96897 1.19750 0.97363 0.98530 0.97706 1.20528 0.99641 0.97079 0.93937 1.21486 0.98612 0.96814 0.97506 1.22716 0.96639 0.90624 0.92284 0.92612 0.92927 0.91160 0.93007 0.94024 0.91524 0.86478 0.86729 0.86952 0.86774 0.91384 0.91431 0.90452 0.91188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.74 12.55 55.43 0.70 -24.04 16 2 C 0.06 1.74 5.15 -17.82 -0.09 1.65 16 3 Si 0.89 20.74 29.54 -169.99 -5.02 15.72 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.52 -13.64 8.35 -34.44 -0.29 -13.93 16 8 H 0.06 1.47 7.63 -52.49 -0.40 1.07 16 9 C 0.06 1.40 2.60 -90.56 -0.24 1.16 16 10 H 0.04 1.05 8.00 -51.93 -0.42 0.63 16 11 C -0.09 -2.12 5.85 -24.43 -0.14 -2.27 16 12 C 0.05 0.98 5.54 -2.71 -0.02 0.96 16 13 N -0.50 -9.82 4.56 -161.77 -0.74 -10.56 16 14 C 0.16 2.83 5.90 -84.57 -0.50 2.33 16 15 C -0.18 -2.89 9.30 -39.36 -0.37 -3.26 16 16 C -0.09 -1.34 10.05 -39.68 -0.40 -1.74 16 17 C -0.17 -2.33 10.03 -39.65 -0.40 -2.72 16 18 C -0.09 -1.35 9.61 -39.52 -0.38 -1.73 16 19 C -0.13 -2.19 5.75 -104.10 -0.60 -2.78 16 20 C -0.07 -1.17 5.76 -27.62 -0.16 -1.33 16 21 C -0.11 -1.93 5.74 -26.95 -0.15 -2.09 16 22 C 0.08 1.71 1.96 -67.05 -0.13 1.58 16 23 H 0.06 1.23 7.75 -51.93 -0.40 0.83 16 24 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 25 H 0.07 1.73 7.49 -51.93 -0.39 1.34 16 26 H 0.05 1.21 8.14 -51.92 -0.42 0.78 16 27 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.07 1.17 7.82 -51.93 -0.41 0.76 16 29 H 0.12 1.80 7.00 -52.49 -0.37 1.43 16 30 H 0.11 1.31 8.06 -52.49 -0.42 0.88 16 31 H 0.11 1.23 8.06 -52.48 -0.42 0.81 16 32 H 0.11 1.37 8.05 -52.49 -0.42 0.95 16 33 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 36 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 286.59 15.07 4.32 4.32 Total: -1.00 -27.69 286.59 -9.92 -37.61 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -5.32 Total: 1.13 kcal Atomic # 6 Polarization: -20.31 SS G_CDS: -3.86 Total: -24.17 kcal Atomic # 7 Polarization: -34.56 SS G_CDS: -0.04 Total: -34.60 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -27.69 -9.92 -37.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259953840.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.235 kcal (2) G-P(sol) polarization free energy of solvation -27.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds