Wall clock time and date at job start Mon Mar 30 2020 05:31:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47209 * 270.00481 * 3 2 1 5 5 H 1.48501 * 109.47358 * 29.99973 * 3 2 1 6 6 H 1.48496 * 109.47341 * 150.00585 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 H 1.09006 * 110.44196 * 59.58364 * 9 7 2 11 11 C 1.55053 * 110.50102 * 297.01343 * 9 7 2 12 12 C 1.55291 * 104.92850 * 238.58798 * 11 9 7 13 13 N 1.46720 * 103.40232 * 336.25244 * 12 11 9 14 14 C 1.37634 * 118.72432 * 165.77824 * 13 12 11 15 15 C 1.39177 * 119.98225 * 27.57235 * 14 13 12 16 16 C 1.37901 * 120.39657 * 178.94569 * 15 14 13 17 17 C 1.38308 * 119.78016 * 359.92164 * 16 15 14 18 18 C 1.37984 * 120.09367 * 0.47475 * 17 16 15 19 19 C 1.38652 * 120.71128 * 0.07420 * 18 17 16 20 20 C 1.50755 * 118.00979 * 177.75510 * 19 18 17 21 21 C 1.53454 * 111.46068 * 173.88823 * 20 19 18 22 22 C 1.48681 * 104.08938 * 42.14466 * 13 12 11 23 23 H 1.09001 * 110.57090 * 74.10167 * 22 13 12 24 24 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 25 25 H 1.08999 * 110.34812 * 357.45319 * 11 9 7 26 26 H 1.09007 * 110.34883 * 119.72580 * 11 9 7 27 27 H 1.09004 * 110.63555 * 94.72457 * 12 11 9 28 28 H 1.08993 * 110.63821 * 217.60979 * 12 11 9 29 29 H 1.07999 * 119.80267 * 358.96203 * 15 14 13 30 30 H 1.07995 * 120.10752 * 179.91027 * 16 15 14 31 31 H 1.08004 * 119.95824 * 180.48959 * 17 16 15 32 32 H 1.07990 * 119.64080 * 180.02562 * 18 17 16 33 33 H 1.08998 * 109.08074 * 294.39905 * 20 19 18 34 34 H 1.08999 * 109.08219 * 53.44369 * 20 19 18 35 35 H 1.09001 * 109.98514 * 158.88263 * 21 20 19 36 36 H 1.09007 * 109.98401 * 280.13925 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 1 0.6092 -2.5720 -0.8725 11 6 0.4140 -2.6369 1.3032 12 6 0.9289 -3.9388 1.9751 13 7 1.4927 -4.6997 0.8545 14 6 2.3022 -5.7786 1.1284 15 6 2.1409 -6.4854 2.3165 16 6 2.9327 -7.5808 2.5898 17 6 3.8918 -7.9801 1.6767 18 6 4.0621 -7.2786 0.5007 19 6 3.2804 -6.1687 0.2188 20 6 3.5527 -5.4173 -1.0595 21 6 2.5114 -4.3151 -1.2955 22 6 2.2254 -3.6808 0.0572 23 1 3.1490 -3.3931 0.5595 24 1 -0.4850 0.8400 0.0004 25 1 0.5833 -1.7807 1.9562 26 1 -0.6454 -2.7278 1.0630 27 1 1.6998 -3.7119 2.7117 28 1 0.1061 -4.4839 2.4374 29 1 1.3909 -6.1742 3.0285 30 1 2.8045 -8.1249 3.5138 31 1 4.5081 -8.8424 1.8842 32 1 4.8128 -7.5971 -0.2072 33 1 4.5431 -4.9658 -1.0033 34 1 3.5266 -6.1158 -1.8959 35 1 2.9101 -3.5664 -1.9801 36 1 1.5987 -4.7466 -1.7064 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259953840.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:31:05 Heat of formation + Delta-G solvation = 7.464547 kcal Electronic energy + Delta-G solvation = -17583.734687 eV Core-core repulsion = 15031.115895 eV Total energy + Delta-G solvation = -2552.618792 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.77731 -38.76290 -35.46538 -35.13319 -32.93228 -31.22278 -29.40938 -29.02749 -26.16811 -24.27747 -23.68924 -22.47240 -21.19652 -20.21480 -18.60582 -17.72671 -16.79855 -16.63114 -16.07680 -15.86100 -15.36777 -15.10509 -14.70320 -14.23094 -13.98495 -13.89951 -13.48248 -13.27312 -12.92902 -12.76799 -12.68818 -12.52461 -12.18586 -12.08071 -11.97726 -11.66298 -11.30721 -11.00348 -10.85314 -10.72269 -10.50666 -9.56489 -8.48902 -8.14604 -6.25378 0.52925 0.59897 1.41214 1.42313 1.52017 2.41583 2.78656 3.13542 3.17516 3.75007 3.86673 4.01271 4.15996 4.21939 4.30282 4.35571 4.45189 4.50569 4.56804 4.59092 4.69676 4.82086 4.99354 5.04887 5.06995 5.12627 5.20523 5.27603 5.33512 5.44614 5.57511 5.62600 5.72644 5.76327 5.85362 6.05191 6.11079 6.37966 6.64441 6.83941 7.42688 8.94700 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.037187 B = 0.006547 C = 0.006074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.780158 B = 4275.940520 C = 4608.951188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.017 3.983 3 Si 0.953 3.047 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.530 4.530 8 H 0.053 0.947 9 C 0.052 3.948 10 H 0.006 0.994 11 C -0.086 4.086 12 C 0.062 3.938 13 N -0.503 5.503 14 C 0.116 3.884 15 C -0.187 4.187 16 C -0.096 4.096 17 C -0.161 4.161 18 C -0.095 4.095 19 C -0.147 4.147 20 C -0.069 4.069 21 C -0.104 4.104 22 C 0.090 3.910 23 H 0.039 0.961 24 H 0.262 0.738 25 H 0.046 0.954 26 H 0.037 0.963 27 H 0.042 0.958 28 H 0.087 0.913 29 H 0.119 0.881 30 H 0.145 0.855 31 H 0.147 0.853 32 H 0.143 0.857 33 H 0.078 0.922 34 H 0.092 0.908 35 H 0.074 0.926 36 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.098 -13.174 2.546 15.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.182 4.182 3 Si 0.779 3.221 4 H -0.200 1.200 5 H -0.209 1.209 6 H -0.193 1.193 7 C -0.569 4.569 8 H 0.072 0.928 9 C 0.033 3.967 10 H 0.024 0.976 11 C -0.125 4.125 12 C -0.063 4.063 13 N -0.215 5.215 14 C 0.016 3.984 15 C -0.209 4.209 16 C -0.114 4.114 17 C -0.180 4.180 18 C -0.114 4.114 19 C -0.150 4.150 20 C -0.105 4.105 21 C -0.142 4.142 22 C -0.015 4.015 23 H 0.057 0.943 24 H 0.071 0.929 25 H 0.064 0.936 26 H 0.055 0.945 27 H 0.060 0.940 28 H 0.105 0.895 29 H 0.137 0.863 30 H 0.163 0.837 31 H 0.165 0.835 32 H 0.160 0.840 33 H 0.096 0.904 34 H 0.110 0.890 35 H 0.093 0.907 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.490 -13.193 2.294 14.881 hybrid contribution 0.294 1.508 0.416 1.592 sum 6.785 -11.685 2.710 13.781 Atomic orbital electron populations 1.70095 1.07245 1.27388 1.50799 1.25704 0.95590 1.02289 0.94648 0.85630 0.78715 0.79450 0.78329 1.19993 1.20947 1.19336 1.21414 0.92799 0.91441 1.51205 0.92828 1.19165 0.92548 0.91517 0.93463 0.97621 1.22362 0.98148 0.93903 0.98114 1.22766 0.98518 0.93960 0.91076 1.59050 1.33118 1.07980 1.21345 1.18780 0.91451 0.93903 0.94301 1.21079 1.03705 0.99787 0.96300 1.21208 0.94816 0.95360 1.00025 1.21239 1.00366 1.01798 0.94617 1.21202 0.98456 0.93826 0.97868 1.20006 0.97606 0.99603 0.97752 1.20500 0.98840 0.96504 0.94699 1.21439 0.99315 0.97637 0.95787 1.22423 0.94901 0.90090 0.94084 0.94278 0.92936 0.93559 0.94456 0.93956 0.89459 0.86271 0.83747 0.83513 0.83954 0.90370 0.88997 0.90718 0.92017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.95 12.55 21.45 0.27 -52.68 16 2 C 0.02 0.94 5.15 84.65 0.44 1.38 16 3 Si 0.95 43.20 29.54 68.60 2.03 45.23 16 4 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 5 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 6 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 7 C -0.53 -28.99 8.35 25.60 0.21 -28.78 16 8 H 0.05 2.88 7.63 -2.91 -0.02 2.86 16 9 C 0.05 2.66 2.60 -10.76 -0.03 2.63 16 10 H 0.01 0.32 8.00 -2.38 -0.02 0.30 16 11 C -0.09 -4.16 5.85 32.08 0.19 -3.97 16 12 C 0.06 2.48 5.54 87.12 0.48 2.96 16 13 N -0.50 -20.17 4.56 -665.73 -3.04 -23.20 16 14 C 0.12 4.13 5.90 38.68 0.23 4.36 16 15 C -0.19 -5.76 9.30 22.42 0.21 -5.55 16 16 C -0.10 -2.35 10.05 22.21 0.22 -2.13 16 17 C -0.16 -3.65 10.03 22.23 0.22 -3.43 16 18 C -0.10 -2.39 9.61 22.31 0.21 -2.17 16 19 C -0.15 -4.62 5.75 -19.53 -0.11 -4.73 16 20 C -0.07 -2.03 5.76 30.02 0.17 -1.86 16 21 C -0.10 -3.82 5.74 30.46 0.17 -3.64 16 22 C 0.09 3.88 1.96 44.36 0.09 3.97 16 23 H 0.04 1.78 7.75 -2.39 -0.02 1.76 16 24 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 25 H 0.05 2.39 7.49 -2.39 -0.02 2.37 16 26 H 0.04 1.83 8.14 -2.38 -0.02 1.82 16 27 H 0.04 1.65 8.14 -2.38 -0.02 1.63 16 28 H 0.09 3.06 7.82 -2.39 -0.02 3.05 16 29 H 0.12 3.49 7.00 -2.91 -0.02 3.47 16 30 H 0.14 2.64 8.06 -2.91 -0.02 2.62 16 31 H 0.15 2.34 8.06 -2.91 -0.02 2.32 16 32 H 0.14 2.73 8.05 -2.92 -0.02 2.71 16 33 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 35 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 36 H 0.06 2.33 8.14 -2.38 -0.02 2.31 16 Total: -1.00 -61.25 286.59 3.02 -58.23 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: 1.05 Total: 13.38 kcal Atomic # 6 Polarization: -43.68 SS G_CDS: 2.71 Total: -40.96 kcal Atomic # 7 Polarization: -73.11 SS G_CDS: -2.77 Total: -75.88 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Total: -61.25 3.02 -58.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259953840.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.700 kcal (2) G-P(sol) polarization free energy of solvation -61.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds