Wall clock time and date at job start Mon Mar 30 2020 05:31:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00203 * 359.97438 * 7 2 1 9 9 C 1.50708 * 120.00008 * 180.02562 * 7 2 1 10 10 H 1.09003 * 110.43995 * 57.43048 * 9 7 2 11 11 C 1.55059 * 110.49384 * 294.72429 * 9 7 2 12 12 C 1.55300 * 104.92604 * 244.06926 * 11 9 7 13 13 N 1.46697 * 103.38042 * 23.76028 * 12 11 9 14 14 C 1.37604 * 118.80097 * 193.98345 * 13 12 11 15 15 C 1.39175 * 119.97171 * 331.23400 * 14 13 12 16 16 C 1.37904 * 120.39545 * 182.48694 * 15 14 13 17 17 C 1.38319 * 119.78027 * 359.96470 * 16 15 14 18 18 C 1.37974 * 120.08295 * 359.48683 * 17 16 15 19 19 C 1.38650 * 120.73146 * 0.13267 * 18 17 16 20 20 C 1.50747 * 118.03197 * 180.93737 * 19 18 17 21 21 C 1.53461 * 111.45797 * 187.45043 * 20 19 18 22 22 C 1.48474 * 104.02623 * 317.75265 * 13 12 11 23 23 H 1.09006 * 111.49653 * 285.58137 * 22 13 12 24 24 H 0.96997 * 119.99848 * 0.02562 * 1 2 3 25 25 H 1.09004 * 110.34943 * 2.93480 * 11 9 7 26 26 H 1.09000 * 110.34785 * 125.20571 * 11 9 7 27 27 H 1.09001 * 110.63980 * 265.28502 * 12 11 9 28 28 H 1.09005 * 110.63791 * 142.23165 * 12 11 9 29 29 H 1.07999 * 119.80249 * 2.51511 * 15 14 13 30 30 H 1.07997 * 120.11108 * 179.97438 * 16 15 14 31 31 H 1.07999 * 119.95344 * 179.51432 * 17 16 15 32 32 H 1.07998 * 119.63252 * 180.15344 * 18 17 16 33 33 H 1.09004 * 109.08367 * 66.94353 * 20 19 18 34 34 H 1.08997 * 109.08683 * 307.96120 * 20 19 18 35 35 H 1.08998 * 109.97921 * 200.99818 * 21 20 19 36 36 H 1.08995 * 109.97753 * 79.66545 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 1 3.8920 -0.6447 0.8613 11 6 4.0550 -0.5856 -1.3186 12 6 4.8100 -1.7503 -2.0152 13 7 4.1863 -2.9490 -1.4440 14 6 4.8047 -4.1656 -1.6192 15 6 5.5942 -4.3887 -2.7434 16 6 6.1765 -5.6210 -2.9538 17 6 5.9749 -6.6408 -2.0413 18 6 5.2025 -6.4222 -0.9192 19 6 4.6178 -5.1858 -0.6914 20 6 3.8038 -5.0077 0.5648 21 6 3.0793 -3.6549 0.5773 22 6 4.0482 -2.6296 -0.0006 23 1 5.0083 -2.6793 0.5132 24 1 -0.4850 0.8400 -0.0004 25 1 3.2319 -0.2397 -1.9439 26 1 4.7395 0.2350 -1.1037 27 1 5.8725 -1.7181 -1.7742 28 1 4.6585 -1.7155 -3.0942 29 1 5.7522 -3.5919 -3.4551 30 1 6.7879 -5.7892 -3.8280 31 1 6.4231 -7.6093 -2.2073 32 1 5.0519 -7.2228 -0.2102 33 1 4.4652 -5.0657 1.4293 34 1 3.0660 -5.8076 0.6279 35 1 2.8155 -3.3831 1.5993 36 1 2.1817 -3.7075 -0.0387 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259953844.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:31:08 Heat of formation + Delta-G solvation = 38.867355 kcal Electronic energy + Delta-G solvation = -17763.125086 eV Core-core repulsion = 15211.868022 eV Total energy + Delta-G solvation = -2551.257064 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.47793 -37.53676 -34.02747 -33.34143 -31.49354 -29.98581 -28.24035 -27.50977 -24.22902 -23.07196 -22.43090 -20.98610 -19.79719 -18.73383 -16.90649 -16.49031 -15.34107 -14.95248 -14.68522 -14.19426 -14.09386 -13.91543 -13.00804 -12.98269 -12.81934 -12.35307 -12.04344 -11.98085 -11.59831 -11.46721 -10.93146 -10.77565 -10.64932 -10.45692 -10.13718 -9.87871 -9.81583 -9.45349 -9.27935 -8.80270 -8.50918 -8.40437 -7.13496 -6.02711 -4.00977 1.67332 1.78394 3.28731 3.37745 3.40124 4.00065 4.40080 4.45436 4.98922 5.15391 5.21751 5.30388 5.34355 5.55767 5.58156 5.69286 5.73474 5.76135 5.87035 5.94938 6.00362 6.05935 6.28963 6.29673 6.45597 6.48347 6.54326 6.70199 6.75051 6.79908 6.86546 6.96601 7.04478 7.21454 7.24848 7.58314 7.82208 7.98571 8.57382 9.03905 9.59286 11.09589 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.038839 B = 0.007331 C = 0.006578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.750664 B = 3818.412671 C = 4255.711733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.070 3.930 3 Si 0.853 3.147 4 H -0.282 1.282 5 H -0.291 1.291 6 H -0.242 1.242 7 C -0.501 4.501 8 H 0.086 0.914 9 C 0.018 3.982 10 H 0.034 0.966 11 C -0.126 4.126 12 C 0.056 3.944 13 N -0.476 5.476 14 C 0.153 3.847 15 C -0.178 4.178 16 C -0.095 4.095 17 C -0.171 4.171 18 C -0.093 4.093 19 C -0.128 4.128 20 C -0.080 4.080 21 C -0.098 4.098 22 C 0.092 3.908 23 H 0.043 0.957 24 H 0.262 0.738 25 H 0.076 0.924 26 H 0.053 0.947 27 H 0.039 0.961 28 H 0.073 0.927 29 H 0.116 0.884 30 H 0.114 0.886 31 H 0.112 0.888 32 H 0.114 0.886 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.776 -8.145 -2.101 14.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.131 4.131 3 Si 0.680 3.320 4 H -0.208 1.208 5 H -0.218 1.218 6 H -0.166 1.166 7 C -0.538 4.538 8 H 0.104 0.896 9 C -0.002 4.002 10 H 0.052 0.948 11 C -0.164 4.164 12 C -0.070 4.070 13 N -0.185 5.185 14 C 0.050 3.950 15 C -0.200 4.200 16 C -0.114 4.114 17 C -0.190 4.190 18 C -0.112 4.112 19 C -0.131 4.131 20 C -0.117 4.117 21 C -0.136 4.136 22 C -0.013 4.013 23 H 0.061 0.939 24 H 0.072 0.928 25 H 0.095 0.905 26 H 0.072 0.928 27 H 0.058 0.942 28 H 0.092 0.908 29 H 0.135 0.865 30 H 0.132 0.868 31 H 0.130 0.870 32 H 0.133 0.867 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.094 0.906 36 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 11.118 -7.975 -2.336 13.881 hybrid contribution 0.961 0.973 0.034 1.368 sum 12.079 -7.002 -2.302 14.150 Atomic orbital electron populations 1.69900 1.06271 1.26721 1.51100 1.24990 0.94604 0.98824 0.94697 0.87419 0.81772 0.84155 0.78605 1.20819 1.21763 1.16597 1.21065 0.87916 0.94790 1.50073 0.89638 1.19746 0.97900 0.89889 0.92636 0.94785 1.23383 0.98802 0.94820 0.99385 1.22812 0.95552 0.89146 0.99448 1.58769 1.45742 1.00393 1.13632 1.18550 0.91027 0.91441 0.93965 1.20853 1.01673 0.98455 0.99002 1.20810 0.98996 0.92976 0.98582 1.20766 1.02976 0.98990 0.96292 1.20873 0.97008 0.95977 0.97301 1.19775 1.02541 0.93550 0.97251 1.20635 0.97709 0.99507 0.93865 1.21562 0.98826 0.91189 1.01976 1.22367 0.97029 0.97606 0.84299 0.93923 0.92841 0.90540 0.92826 0.94243 0.90839 0.86549 0.86754 0.86956 0.86749 0.91788 0.91258 0.90644 0.89331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.04 13.96 55.43 0.77 -26.27 16 2 C 0.07 1.94 5.36 -17.82 -0.10 1.84 16 3 Si 0.85 20.22 26.27 -169.99 -4.47 15.75 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.24 -5.20 4.25 56.52 0.24 -4.96 16 7 C -0.50 -13.29 8.48 -34.44 -0.29 -13.58 16 8 H 0.09 2.46 5.64 -52.49 -0.30 2.16 16 9 C 0.02 0.39 2.42 -90.55 -0.22 0.17 16 10 H 0.03 0.76 7.47 -51.93 -0.39 0.37 16 11 C -0.13 -2.56 4.53 -24.42 -0.11 -2.67 16 12 C 0.06 1.01 5.57 -2.72 -0.02 0.99 16 13 N -0.48 -9.28 4.55 -161.75 -0.74 -10.02 16 14 C 0.15 2.74 5.89 -84.58 -0.50 2.24 16 15 C -0.18 -2.83 9.32 -39.36 -0.37 -3.20 16 16 C -0.09 -1.31 10.05 -39.67 -0.40 -1.71 16 17 C -0.17 -2.29 10.03 -39.65 -0.40 -2.69 16 18 C -0.09 -1.34 9.61 -39.53 -0.38 -1.72 16 19 C -0.13 -2.13 5.75 -104.11 -0.60 -2.73 16 20 C -0.08 -1.27 5.76 -27.62 -0.16 -1.43 16 21 C -0.10 -1.86 4.59 -26.78 -0.12 -1.98 16 22 C 0.09 1.82 2.37 -66.99 -0.16 1.66 16 23 H 0.04 0.80 8.11 -51.93 -0.42 0.38 16 24 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 25 H 0.08 1.70 6.68 -51.93 -0.35 1.36 16 26 H 0.05 1.02 6.85 -51.93 -0.36 0.66 16 27 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.07 1.23 7.81 -51.93 -0.41 0.82 16 29 H 0.12 1.72 7.00 -52.49 -0.37 1.35 16 30 H 0.11 1.27 8.06 -52.49 -0.42 0.85 16 31 H 0.11 1.22 8.06 -52.49 -0.42 0.79 16 32 H 0.11 1.38 8.05 -52.49 -0.42 0.95 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 36 H 0.09 1.92 6.53 -51.93 -0.34 1.59 16 LS Contribution 274.11 15.07 4.13 4.13 Total: -1.00 -29.20 274.11 -9.28 -38.49 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -5.17 Total: 2.71 kcal Atomic # 6 Polarization: -20.98 SS G_CDS: -3.81 Total: -24.80 kcal Atomic # 7 Polarization: -36.32 SS G_CDS: 0.04 Total: -36.28 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -4.47 Total: 15.75 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -29.20 -9.28 -38.49 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259953844.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.354 kcal (2) G-P(sol) polarization free energy of solvation -29.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds