Wall clock time and date at job start Mon Mar 30 2020 05:31:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00203 * 359.97438 * 7 2 1 9 9 C 1.50708 * 120.00008 * 180.02562 * 7 2 1 10 10 H 1.09003 * 110.43995 * 57.43048 * 9 7 2 11 11 C 1.55059 * 110.49384 * 294.72429 * 9 7 2 12 12 C 1.55300 * 104.92604 * 244.06926 * 11 9 7 13 13 N 1.46697 * 103.38042 * 23.76028 * 12 11 9 14 14 C 1.37604 * 118.80097 * 193.98345 * 13 12 11 15 15 C 1.39175 * 119.97171 * 331.23400 * 14 13 12 16 16 C 1.37904 * 120.39545 * 182.48694 * 15 14 13 17 17 C 1.38319 * 119.78027 * 359.96470 * 16 15 14 18 18 C 1.37974 * 120.08295 * 359.48683 * 17 16 15 19 19 C 1.38650 * 120.73146 * 0.13267 * 18 17 16 20 20 C 1.50747 * 118.03197 * 180.93737 * 19 18 17 21 21 C 1.53461 * 111.45797 * 187.45043 * 20 19 18 22 22 C 1.48474 * 104.02623 * 317.75265 * 13 12 11 23 23 H 1.09006 * 111.49653 * 285.58137 * 22 13 12 24 24 H 0.96997 * 119.99848 * 0.02562 * 1 2 3 25 25 H 1.09004 * 110.34943 * 2.93480 * 11 9 7 26 26 H 1.09000 * 110.34785 * 125.20571 * 11 9 7 27 27 H 1.09001 * 110.63980 * 265.28502 * 12 11 9 28 28 H 1.09005 * 110.63791 * 142.23165 * 12 11 9 29 29 H 1.07999 * 119.80249 * 2.51511 * 15 14 13 30 30 H 1.07997 * 120.11108 * 179.97438 * 16 15 14 31 31 H 1.07999 * 119.95344 * 179.51432 * 17 16 15 32 32 H 1.07998 * 119.63252 * 180.15344 * 18 17 16 33 33 H 1.09004 * 109.08367 * 66.94353 * 20 19 18 34 34 H 1.08997 * 109.08683 * 307.96120 * 20 19 18 35 35 H 1.08998 * 109.97921 * 200.99818 * 21 20 19 36 36 H 1.08995 * 109.97753 * 79.66545 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 1 3.8920 -0.6447 0.8613 11 6 4.0550 -0.5856 -1.3186 12 6 4.8100 -1.7503 -2.0152 13 7 4.1863 -2.9490 -1.4440 14 6 4.8047 -4.1656 -1.6192 15 6 5.5942 -4.3887 -2.7434 16 6 6.1765 -5.6210 -2.9538 17 6 5.9749 -6.6408 -2.0413 18 6 5.2025 -6.4222 -0.9192 19 6 4.6178 -5.1858 -0.6914 20 6 3.8038 -5.0077 0.5648 21 6 3.0793 -3.6549 0.5773 22 6 4.0482 -2.6296 -0.0006 23 1 5.0083 -2.6793 0.5132 24 1 -0.4850 0.8400 -0.0004 25 1 3.2319 -0.2397 -1.9439 26 1 4.7395 0.2350 -1.1037 27 1 5.8725 -1.7181 -1.7742 28 1 4.6585 -1.7155 -3.0942 29 1 5.7522 -3.5919 -3.4551 30 1 6.7879 -5.7892 -3.8280 31 1 6.4231 -7.6093 -2.2073 32 1 5.0519 -7.2228 -0.2102 33 1 4.4652 -5.0657 1.4293 34 1 3.0660 -5.8076 0.6279 35 1 2.8155 -3.3831 1.5993 36 1 2.1817 -3.7075 -0.0387 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259953844.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:31:08 Heat of formation + Delta-G solvation = 21.799888 kcal Electronic energy + Delta-G solvation = -17763.865186 eV Core-core repulsion = 15211.868022 eV Total energy + Delta-G solvation = -2551.997165 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.82697 -38.84399 -35.36158 -35.11338 -33.26242 -31.27050 -29.61443 -29.00759 -26.06535 -24.36792 -23.78900 -22.35960 -21.24262 -20.36923 -18.34913 -18.11443 -16.74030 -16.43405 -16.27135 -15.67726 -15.48960 -15.20451 -14.71072 -14.39283 -14.10278 -13.83988 -13.52545 -13.38914 -13.17992 -12.85230 -12.61727 -12.25061 -12.15781 -12.05190 -11.76097 -11.39095 -11.27627 -11.10836 -10.79103 -10.63157 -10.59255 -9.54634 -8.41325 -8.17265 -6.19198 0.54676 0.62851 1.39810 1.43141 1.51754 2.44677 2.81137 3.10092 3.17085 3.74217 3.82740 4.01455 4.11948 4.24285 4.28427 4.32755 4.44199 4.46127 4.54364 4.59906 4.68119 4.77610 4.92772 4.96978 5.05366 5.08515 5.13719 5.24880 5.29110 5.35095 5.51736 5.58179 5.65662 5.74844 5.78167 6.08375 6.22356 6.48152 6.68315 6.87907 7.44524 8.98280 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.038839 B = 0.007331 C = 0.006578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.750664 B = 3818.412671 C = 4255.711733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C 0.006 3.994 3 Si 0.916 3.084 4 H -0.280 1.280 5 H -0.301 1.301 6 H -0.204 1.204 7 C -0.493 4.493 8 H 0.047 0.953 9 C 0.009 3.991 10 H 0.040 0.960 11 C -0.125 4.125 12 C 0.063 3.937 13 N -0.498 5.498 14 C 0.121 3.879 15 C -0.187 4.187 16 C -0.094 4.094 17 C -0.164 4.164 18 C -0.096 4.096 19 C -0.149 4.149 20 C -0.072 4.072 21 C -0.095 4.095 22 C 0.095 3.905 23 H 0.058 0.942 24 H 0.260 0.740 25 H 0.052 0.948 26 H 0.076 0.924 27 H 0.061 0.939 28 H 0.083 0.917 29 H 0.123 0.877 30 H 0.145 0.855 31 H 0.145 0.855 32 H 0.138 0.862 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.068 0.932 36 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.231 -9.224 -2.777 18.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.190 4.190 3 Si 0.741 3.259 4 H -0.206 1.206 5 H -0.228 1.228 6 H -0.126 1.126 7 C -0.531 4.531 8 H 0.065 0.935 9 C -0.010 4.010 10 H 0.058 0.942 11 C -0.163 4.163 12 C -0.063 4.063 13 N -0.209 5.209 14 C 0.019 3.981 15 C -0.209 4.209 16 C -0.113 4.113 17 C -0.183 4.183 18 C -0.114 4.114 19 C -0.152 4.152 20 C -0.109 4.109 21 C -0.132 4.132 22 C -0.011 4.011 23 H 0.075 0.925 24 H 0.068 0.932 25 H 0.071 0.929 26 H 0.094 0.906 27 H 0.079 0.921 28 H 0.102 0.898 29 H 0.141 0.859 30 H 0.162 0.838 31 H 0.163 0.837 32 H 0.156 0.844 33 H 0.102 0.898 34 H 0.097 0.903 35 H 0.086 0.914 36 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 14.612 -9.087 -3.021 17.470 hybrid contribution -0.122 1.125 0.227 1.154 sum 14.490 -7.962 -2.794 16.768 Atomic orbital electron populations 1.70076 1.08415 1.27473 1.53934 1.25872 0.95288 1.02990 0.94809 0.86419 0.81896 0.78775 0.78813 1.20638 1.22779 1.12569 1.21316 0.90514 0.93219 1.48004 0.93492 1.19743 0.94856 0.92377 0.94019 0.94245 1.23232 0.98707 0.96506 0.97842 1.22781 0.96209 0.87585 0.99699 1.58792 1.47554 1.01534 1.13059 1.18769 0.92763 0.90967 0.95568 1.21049 1.01575 0.99758 0.98480 1.21203 0.98434 0.92097 0.99530 1.21207 1.01664 1.00210 0.95248 1.21173 0.96432 0.95553 0.98237 1.19974 1.03341 0.94504 0.97391 1.20555 0.97993 0.97426 0.94903 1.21412 0.97676 0.93615 1.00538 1.22242 0.97348 0.95957 0.85534 0.92461 0.93169 0.92914 0.90596 0.92074 0.89822 0.85929 0.83752 0.83736 0.84371 0.89755 0.90342 0.91358 0.93363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.33 13.96 21.45 0.30 -60.03 16 2 C 0.01 0.33 5.36 84.65 0.45 0.78 16 3 Si 0.92 42.20 26.27 68.60 1.80 44.00 16 4 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 5 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 6 H -0.20 -8.02 4.25 99.48 0.42 -7.60 16 7 C -0.49 -27.19 8.48 25.60 0.22 -26.97 16 8 H 0.05 2.90 5.64 -2.92 -0.02 2.88 16 9 C 0.01 0.42 2.42 -10.75 -0.03 0.39 16 10 H 0.04 1.70 7.47 -2.39 -0.02 1.68 16 11 C -0.12 -4.89 4.53 32.09 0.15 -4.74 16 12 C 0.06 2.13 5.57 87.13 0.49 2.61 16 13 N -0.50 -19.11 4.55 -665.67 -3.03 -22.14 16 14 C 0.12 4.14 5.89 38.68 0.23 4.37 16 15 C -0.19 -5.46 9.32 22.42 0.21 -5.25 16 16 C -0.09 -2.23 10.05 22.21 0.22 -2.01 16 17 C -0.16 -3.69 10.03 22.23 0.22 -3.47 16 18 C -0.10 -2.43 9.61 22.31 0.21 -2.21 16 19 C -0.15 -4.69 5.75 -19.53 -0.11 -4.81 16 20 C -0.07 -2.21 5.76 30.02 0.17 -2.04 16 21 C -0.09 -3.70 4.59 30.56 0.14 -3.56 16 22 C 0.09 3.72 2.37 44.51 0.11 3.82 16 23 H 0.06 2.07 8.11 -2.38 -0.02 2.05 16 24 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 25 H 0.05 2.31 6.68 -2.38 -0.02 2.29 16 26 H 0.08 2.62 6.85 -2.39 -0.02 2.60 16 27 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.08 2.64 7.81 -2.38 -0.02 2.62 16 29 H 0.12 3.30 7.00 -2.91 -0.02 3.28 16 30 H 0.14 2.51 8.06 -2.91 -0.02 2.49 16 31 H 0.14 2.33 8.06 -2.91 -0.02 2.30 16 32 H 0.14 2.78 8.05 -2.91 -0.02 2.75 16 33 H 0.08 2.23 8.14 -2.38 -0.02 2.21 16 34 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 35 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 36 H 0.05 2.25 6.53 -2.39 -0.02 2.23 16 Total: -1.00 -66.20 274.11 2.53 -63.67 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: 0.78 Total: 17.58 kcal Atomic # 6 Polarization: -45.76 SS G_CDS: 2.68 Total: -43.08 kcal Atomic # 7 Polarization: -79.44 SS G_CDS: -2.73 Total: -82.17 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 1.80 Total: 44.00 kcal Total: -66.20 2.53 -63.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259953844.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.471 kcal (2) G-P(sol) polarization free energy of solvation -66.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds